Wall clock time and date at job start Tue Mar 31 2020 20:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47049 * 2 1 4 4 C 1.52998 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47144 * 305.00541 * 4 3 2 6 6 C 1.53006 * 109.47054 * 64.99900 * 4 3 2 7 7 C 1.50696 * 109.47540 * 185.00262 * 4 3 2 8 8 O 1.21285 * 119.99597 * 330.33682 * 7 4 3 9 9 N 1.34767 * 120.00310 * 150.34522 * 7 4 3 10 10 C 1.47024 * 125.65042 * 184.53481 * 9 7 4 11 11 C 1.54330 * 107.26935 * 178.84490 * 10 9 7 12 12 C 1.55158 * 103.02062 * 338.14239 * 11 10 9 13 13 H 1.08994 * 111.00554 * 277.23088 * 12 11 10 14 14 N 1.46505 * 111.00660 * 153.37718 * 12 11 10 15 15 C 1.35309 * 125.86439 * 332.52425 * 14 12 11 16 16 C 1.35360 * 106.17288 * 179.90471 * 15 14 12 17 17 C 1.50694 * 126.75221 * 180.12354 * 16 15 14 18 18 N 1.46500 * 109.46898 * 95.29160 * 17 16 15 19 19 C 1.36944 * 119.99970 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99514 * 359.97438 * 19 18 17 21 21 C 1.38819 * 120.00155 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99531 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47072 * 89.99676 * 23 21 19 25 25 H 1.48501 * 109.46855 * 209.99460 * 23 21 19 26 26 H 1.48498 * 109.46972 * 329.99723 * 23 21 19 27 27 N 1.33771 * 106.49336 * 0.34792 * 16 15 14 28 28 N 1.28629 * 108.88761 * 359.77637 * 27 16 15 29 29 C 1.47427 * 125.64890 * 4.83691 * 9 7 4 30 30 H 1.09003 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46660 * 299.99657 * 1 2 3 32 32 H 1.08999 * 109.47513 * 60.00152 * 1 2 3 33 33 H 1.09001 * 109.46660 * 240.00343 * 2 1 3 34 34 H 1.08996 * 109.47161 * 120.00529 * 2 1 3 35 35 H 1.09004 * 109.47257 * 60.00112 * 3 2 1 36 36 H 1.09002 * 109.47252 * 299.99963 * 3 2 1 37 37 H 1.08997 * 109.47253 * 294.03256 * 6 4 3 38 38 H 1.09005 * 109.46826 * 54.02917 * 6 4 3 39 39 H 1.08997 * 109.47176 * 174.02609 * 6 4 3 40 40 H 1.08994 * 109.88552 * 298.39742 * 10 9 7 41 41 H 1.09006 * 109.87815 * 59.55861 * 10 9 7 42 42 H 1.09000 * 110.85574 * 219.67392 * 11 10 9 43 43 H 1.08999 * 110.51456 * 96.45012 * 11 10 9 44 44 H 1.07996 * 126.91650 * 0.02562 * 15 14 12 45 45 H 1.08997 * 109.47183 * 215.28916 * 17 16 15 46 46 H 1.08997 * 109.47580 * 335.29752 * 17 16 15 47 47 H 0.97004 * 120.00452 * 0.02562 * 18 17 16 48 48 H 0.96997 * 119.99510 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.36634 * 322.93772 * 29 9 7 50 50 H 1.09002 * 110.36420 * 85.26029 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0795 0.8331 -1.3083 7 6 4.0724 2.8579 0.1232 8 8 3.4138 3.7759 -0.3178 9 7 5.2535 3.1035 0.7239 10 6 5.8163 4.4343 0.9956 11 6 7.1628 4.2233 1.7196 12 6 7.0207 2.7968 2.3131 13 1 6.4748 2.8186 3.2563 14 7 8.3318 2.1653 2.4821 15 6 9.4392 2.4295 1.7508 16 6 10.4148 1.6297 2.2415 17 6 11.8418 1.5512 1.7636 18 7 12.6827 2.4183 2.5925 19 6 14.0262 2.5103 2.3435 20 1 14.4657 1.9432 1.5363 21 6 14.8232 3.3316 3.1293 22 7 14.2874 4.0222 4.1133 23 14 16.6558 3.4564 2.7900 24 1 16.9065 4.5558 1.8237 25 1 17.3758 3.7380 4.0579 26 1 17.1418 2.1748 2.2187 27 7 9.8617 0.9192 3.2308 28 7 8.6269 1.2600 3.3482 29 6 6.1982 2.0823 1.2119 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.8060 -0.2213 -1.3486 38 1 3.6311 1.3572 -2.1524 39 1 5.1642 0.9293 -1.3557 40 1 5.9766 4.9674 0.0585 41 1 5.1384 5.0000 1.6349 42 1 7.2966 4.9592 2.5125 43 1 7.9889 4.2651 1.0098 44 1 9.5275 3.1375 0.9401 45 1 12.1944 0.5226 1.8398 46 1 11.8958 1.8779 0.7252 47 1 12.2880 2.9274 3.3178 48 1 14.8442 4.5964 4.6621 49 1 5.6568 1.2348 1.6324 50 1 6.8515 1.7530 0.4039 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098645526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:56 Heat of formation + Delta-G solvation = 68.665570 kcal Electronic energy + Delta-G solvation = -28589.102278 eV Core-core repulsion = 24653.751952 eV Total energy + Delta-G solvation = -3935.350326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.12168 -40.75301 -38.40077 -36.36709 -35.08749 -34.03639 -32.66826 -31.94127 -30.88550 -30.00518 -29.21359 -27.15274 -25.91674 -25.39533 -23.88565 -22.98650 -22.60923 -21.29450 -20.80779 -20.66781 -19.49529 -17.94361 -17.60741 -17.08187 -16.51331 -15.96258 -15.82641 -15.68648 -14.84298 -14.70185 -14.54430 -14.41566 -14.14678 -13.88632 -13.83295 -13.61081 -13.25826 -13.13102 -12.83339 -12.74957 -12.65469 -12.44239 -12.37069 -12.27508 -12.02788 -11.69433 -11.49510 -11.42957 -11.30321 -11.24274 -10.99179 -10.92487 -10.81807 -10.51482 -10.19024 -10.10081 -9.92889 -9.75088 -9.23821 -8.92950 -8.88118 -6.93578 -5.75468 -3.05242 1.69303 1.99945 2.17184 2.57426 2.83870 3.44724 3.50052 3.52106 3.64803 3.76162 4.01797 4.22397 4.26571 4.37386 4.42341 4.57449 4.61167 4.66205 4.70821 4.73696 4.77869 4.90592 5.02792 5.07868 5.19657 5.20847 5.24224 5.26972 5.31933 5.33029 5.38997 5.42732 5.47971 5.50739 5.59974 5.62098 5.65849 5.74041 5.77500 5.84051 5.92571 6.14905 6.34468 6.60793 6.67214 6.74169 6.89997 7.67391 7.69855 8.41696 8.75626 9.53621 10.08860 10.44690 11.47204 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.001924 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.732580 B =14549.002320 C =14922.482481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.109 4.109 5 H 0.092 0.908 6 C -0.142 4.142 7 C 0.538 3.462 8 O -0.532 6.532 9 N -0.619 5.619 10 C 0.110 3.890 11 C -0.143 4.143 12 C 0.136 3.864 13 H 0.129 0.871 14 N -0.294 5.294 15 C -0.043 4.043 16 C -0.001 4.001 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.250 5.250 28 N -0.093 5.093 29 C 0.094 3.906 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.188 0.812 45 H 0.040 0.960 46 H 0.038 0.962 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.094 0.906 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.368 -4.284 -10.024 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.130 4.130 5 H 0.110 0.890 6 C -0.200 4.200 7 C 0.327 3.673 8 O -0.408 6.408 9 N -0.355 5.355 10 C -0.013 4.013 11 C -0.181 4.181 12 C 0.032 3.968 13 H 0.147 0.853 14 N -0.088 5.088 15 C -0.193 4.193 16 C -0.139 4.139 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.117 5.117 28 N -0.071 5.071 29 C -0.031 4.031 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.205 0.795 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.112 0.888 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -28.180 -4.702 -9.208 30.017 hybrid contribution 1.322 1.100 -0.610 1.824 sum -26.858 -3.601 -9.818 28.822 Atomic orbital electron populations 1.21762 0.95605 1.01670 1.01981 1.21585 0.96152 0.96287 1.02294 1.21493 0.91811 0.97236 1.03488 1.21367 0.97991 0.92632 1.00984 0.89000 1.21772 1.01261 1.01470 0.95493 1.20455 0.78781 0.91681 0.76365 1.90722 1.56035 1.46764 1.47260 1.48428 1.19306 1.07543 1.60204 1.21948 0.93404 0.85144 1.00789 1.23163 0.98412 0.94975 1.01575 1.22593 0.80382 0.92685 1.01163 0.85268 1.47027 1.09700 1.28188 1.23845 1.23306 0.86667 1.06120 1.03214 1.22480 0.98693 0.96710 0.95987 1.18960 0.81075 0.95844 0.93843 1.42300 1.05018 1.52140 1.37591 1.19232 0.83897 1.21659 1.12389 0.90871 1.24761 0.98176 0.99834 0.98100 1.69682 1.34761 1.32151 1.21394 0.86154 0.85170 0.77683 0.76953 1.21740 1.21788 1.20658 1.75118 0.98915 1.21581 1.16127 1.78297 1.11286 1.05217 1.12307 1.22640 0.92140 0.91900 0.96373 0.92661 0.92712 0.92639 0.91566 0.91896 0.91615 0.90675 0.90881 0.91650 0.92260 0.90161 0.90388 0.87814 0.88560 0.79502 0.94268 0.94463 0.78101 0.93513 0.88759 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.13 -0.65 5.69 -26.73 -0.15 -0.81 16 3 C -0.10 -0.68 4.19 -26.73 -0.11 -0.80 16 4 C -0.11 -0.72 2.27 -91.77 -0.21 -0.93 16 5 H 0.09 0.49 6.58 -51.93 -0.34 0.15 16 6 C -0.14 -0.83 8.78 37.16 0.33 -0.50 16 7 C 0.54 4.99 6.90 -10.99 -0.08 4.91 16 8 O -0.53 -6.85 16.60 5.55 0.09 -6.75 16 9 N -0.62 -4.81 3.33 -170.52 -0.57 -5.37 16 10 C 0.11 0.77 6.87 -3.06 -0.02 0.75 16 11 C -0.14 -0.95 6.31 -24.89 -0.16 -1.11 16 12 C 0.14 1.11 4.12 -65.78 -0.27 0.83 16 13 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 14 N -0.29 -3.69 3.40 -52.68 -0.18 -3.87 16 15 C -0.04 -0.60 10.61 -17.05 -0.18 -0.78 16 16 C 0.00 -0.02 6.62 -82.78 -0.55 -0.57 16 17 C 0.23 4.72 6.82 -5.20 -0.04 4.69 16 18 N -0.73 -18.63 5.59 -61.09 -0.34 -18.97 16 19 C -0.24 -6.71 9.99 -15.05 -0.15 -6.86 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 23 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 N -0.25 -4.85 12.41 33.29 0.41 -4.44 16 28 N -0.09 -1.52 13.16 60.35 0.79 -0.73 16 29 C 0.09 0.65 6.42 -2.53 -0.02 0.63 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.31 6.70 -51.93 -0.35 -0.03 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.59 8.02 -51.93 -0.42 0.17 16 37 H 0.07 0.33 6.86 -51.93 -0.36 -0.03 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.64 6.24 -51.93 -0.32 0.32 16 44 H 0.19 1.99 6.82 -52.49 -0.36 1.63 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.39 10.69 7.66 -40.82 -0.31 10.37 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.09 0.55 6.69 -51.93 -0.35 0.20 16 50 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 405.13 15.07 6.11 6.11 Total: -1.00 -35.24 405.13 -7.58 -42.82 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.27 Total: 3.01 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.33 Total: -1.40 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.84 Total: -61.06 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: 0.09 Total: -6.75 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.24 -7.58 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.481 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds