Wall clock time and date at job start Tue Mar 31 2020 20:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47049 * 2 1 4 4 C 1.52998 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47144 * 305.00541 * 4 3 2 6 6 C 1.53006 * 109.47054 * 64.99900 * 4 3 2 7 7 C 1.50696 * 109.47540 * 185.00262 * 4 3 2 8 8 O 1.21285 * 119.99597 * 330.33682 * 7 4 3 9 9 N 1.34767 * 120.00310 * 150.34522 * 7 4 3 10 10 C 1.47024 * 125.65042 * 184.53481 * 9 7 4 11 11 C 1.54330 * 107.26935 * 178.84490 * 10 9 7 12 12 C 1.55158 * 103.02062 * 338.14239 * 11 10 9 13 13 H 1.08994 * 111.00554 * 277.23088 * 12 11 10 14 14 N 1.46505 * 111.00660 * 153.37718 * 12 11 10 15 15 C 1.35309 * 125.86439 * 332.52425 * 14 12 11 16 16 C 1.35360 * 106.17288 * 179.90471 * 15 14 12 17 17 C 1.50694 * 126.75221 * 180.12354 * 16 15 14 18 18 N 1.46500 * 109.46898 * 95.29160 * 17 16 15 19 19 C 1.36944 * 119.99970 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99514 * 359.97438 * 19 18 17 21 21 C 1.38819 * 120.00155 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99531 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47072 * 89.99676 * 23 21 19 25 25 H 1.48501 * 109.46855 * 209.99460 * 23 21 19 26 26 H 1.48498 * 109.46972 * 329.99723 * 23 21 19 27 27 N 1.33771 * 106.49336 * 0.34792 * 16 15 14 28 28 N 1.28629 * 108.88761 * 359.77637 * 27 16 15 29 29 C 1.47427 * 125.64890 * 4.83691 * 9 7 4 30 30 H 1.09003 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46660 * 299.99657 * 1 2 3 32 32 H 1.08999 * 109.47513 * 60.00152 * 1 2 3 33 33 H 1.09001 * 109.46660 * 240.00343 * 2 1 3 34 34 H 1.08996 * 109.47161 * 120.00529 * 2 1 3 35 35 H 1.09004 * 109.47257 * 60.00112 * 3 2 1 36 36 H 1.09002 * 109.47252 * 299.99963 * 3 2 1 37 37 H 1.08997 * 109.47253 * 294.03256 * 6 4 3 38 38 H 1.09005 * 109.46826 * 54.02917 * 6 4 3 39 39 H 1.08997 * 109.47176 * 174.02609 * 6 4 3 40 40 H 1.08994 * 109.88552 * 298.39742 * 10 9 7 41 41 H 1.09006 * 109.87815 * 59.55861 * 10 9 7 42 42 H 1.09000 * 110.85574 * 219.67392 * 11 10 9 43 43 H 1.08999 * 110.51456 * 96.45012 * 11 10 9 44 44 H 1.07996 * 126.91650 * 0.02562 * 15 14 12 45 45 H 1.08997 * 109.47183 * 215.28916 * 17 16 15 46 46 H 1.08997 * 109.47580 * 335.29752 * 17 16 15 47 47 H 0.97004 * 120.00452 * 0.02562 * 18 17 16 48 48 H 0.96997 * 119.99510 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.36634 * 322.93772 * 29 9 7 50 50 H 1.09002 * 110.36420 * 85.26029 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0795 0.8331 -1.3083 7 6 4.0724 2.8579 0.1232 8 8 3.4138 3.7759 -0.3178 9 7 5.2535 3.1035 0.7239 10 6 5.8163 4.4343 0.9956 11 6 7.1628 4.2233 1.7196 12 6 7.0207 2.7968 2.3131 13 1 6.4748 2.8186 3.2563 14 7 8.3318 2.1653 2.4821 15 6 9.4392 2.4295 1.7508 16 6 10.4148 1.6297 2.2415 17 6 11.8418 1.5512 1.7636 18 7 12.6827 2.4183 2.5925 19 6 14.0262 2.5103 2.3435 20 1 14.4657 1.9432 1.5363 21 6 14.8232 3.3316 3.1293 22 7 14.2874 4.0222 4.1133 23 14 16.6558 3.4564 2.7900 24 1 16.9065 4.5558 1.8237 25 1 17.3758 3.7380 4.0579 26 1 17.1418 2.1748 2.2187 27 7 9.8617 0.9192 3.2308 28 7 8.6269 1.2600 3.3482 29 6 6.1982 2.0823 1.2119 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.8060 -0.2213 -1.3486 38 1 3.6311 1.3572 -2.1524 39 1 5.1642 0.9293 -1.3557 40 1 5.9766 4.9674 0.0585 41 1 5.1384 5.0000 1.6349 42 1 7.2966 4.9592 2.5125 43 1 7.9889 4.2651 1.0098 44 1 9.5275 3.1375 0.9401 45 1 12.1944 0.5226 1.8398 46 1 11.8958 1.8779 0.7252 47 1 12.2880 2.9274 3.3178 48 1 14.8442 4.5964 4.6621 49 1 5.6568 1.2348 1.6324 50 1 6.8515 1.7530 0.4039 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098645526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:53 Heat of formation + Delta-G solvation = 45.206134 kcal Electronic energy + Delta-G solvation = -28590.119555 eV Core-core repulsion = 24653.751952 eV Total energy + Delta-G solvation = -3936.367603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.11 seconds Orbital eigenvalues (eV) -44.30135 -41.44164 -39.11657 -36.95120 -36.78314 -35.19166 -33.71924 -33.13953 -31.74591 -31.49468 -29.97997 -27.63940 -27.61700 -26.05706 -24.84638 -24.62098 -23.39913 -22.20343 -21.79341 -21.48689 -20.11988 -19.36243 -18.62767 -18.22719 -17.42255 -16.92492 -16.54528 -16.52621 -16.25757 -15.92941 -15.46693 -15.32140 -15.04300 -14.91362 -14.80149 -14.41932 -14.36376 -14.24324 -13.86402 -13.53215 -13.40785 -13.19352 -13.15218 -13.03571 -12.85933 -12.82813 -12.75579 -12.54553 -12.19650 -12.07527 -12.05273 -11.91587 -11.87461 -11.75274 -11.74894 -11.45619 -11.09896 -10.93466 -10.80044 -10.22005 -9.88852 -8.99493 -7.91633 -5.21543 0.57278 1.13358 1.46591 1.47440 1.53105 1.53772 1.62493 1.87317 2.61179 2.97995 3.14038 3.29780 3.41842 3.53702 3.67086 3.73373 3.84822 3.90167 3.96851 4.02466 4.16291 4.22824 4.27021 4.27868 4.32964 4.39977 4.50080 4.55082 4.62658 4.69438 4.71589 4.77778 4.85578 4.85909 4.87701 4.89411 4.97617 5.04518 5.12139 5.14454 5.18123 5.20577 5.29327 5.39407 5.47994 5.53454 5.65170 6.24221 6.28264 6.98396 7.35405 7.51427 8.07150 8.32438 9.32141 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.001924 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.732580 B =14549.002320 C =14922.482481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.105 4.105 5 H 0.111 0.889 6 C -0.140 4.140 7 C 0.534 3.466 8 O -0.575 6.575 9 N -0.616 5.616 10 C 0.110 3.890 11 C -0.133 4.133 12 C 0.128 3.872 13 H 0.141 0.859 14 N -0.275 5.275 15 C -0.017 4.017 16 C -0.034 4.034 17 C 0.234 3.766 18 N -0.739 5.739 19 C -0.243 4.243 20 H 0.085 0.915 21 C -0.077 4.077 22 N -0.972 5.972 23 Si 0.977 3.023 24 H -0.284 1.284 25 H -0.300 1.300 26 H -0.268 1.268 27 N -0.295 5.295 28 N -0.104 5.104 29 C 0.100 3.900 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.224 0.776 45 H 0.029 0.971 46 H 0.063 0.937 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.110 0.890 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.775 -4.799 -11.267 30.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.129 0.871 6 C -0.197 4.197 7 C 0.325 3.675 8 O -0.454 6.454 9 N -0.350 5.350 10 C -0.013 4.013 11 C -0.172 4.172 12 C 0.025 3.975 13 H 0.159 0.841 14 N -0.068 5.068 15 C -0.168 4.168 16 C -0.172 4.172 17 C 0.106 3.894 18 N -0.382 5.382 19 C -0.374 4.374 20 H 0.102 0.898 21 C -0.269 4.269 22 N -0.623 5.623 23 Si 0.806 3.194 24 H -0.210 1.210 25 H -0.227 1.227 26 H -0.193 1.193 27 N -0.162 5.162 28 N -0.083 5.083 29 C -0.024 4.024 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.240 0.760 45 H 0.047 0.953 46 H 0.081 0.919 47 H 0.202 0.798 48 H 0.059 0.941 49 H 0.128 0.872 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.608 -5.264 -10.473 30.916 hybrid contribution 1.306 1.264 -0.267 1.837 sum -27.302 -4.000 -10.740 29.610 Atomic orbital electron populations 1.21781 0.95682 1.02070 1.01682 1.21566 0.96093 0.95193 1.03029 1.21442 0.92022 0.98032 1.02213 1.21417 0.97789 0.91221 1.02167 0.87148 1.21772 1.01218 1.02242 0.94500 1.20937 0.78656 0.92283 0.75657 1.90703 1.57276 1.48181 1.49207 1.48443 1.19017 1.08114 1.59434 1.21981 0.93541 0.84958 1.00808 1.23157 0.98270 0.94013 1.01749 1.22986 0.78557 0.93445 1.02468 0.84128 1.47285 1.10783 1.26665 1.22115 1.23653 0.85697 1.04644 1.02787 1.22245 0.98503 0.98996 0.97431 1.18984 0.81976 0.94219 0.94188 1.42505 1.05032 1.52735 1.37889 1.19700 0.85144 1.20643 1.11948 0.89761 1.25613 1.02643 1.00255 0.98371 1.69851 1.36125 1.33458 1.22817 0.85080 0.79798 0.78139 0.76357 1.21042 1.22663 1.19270 1.75053 1.00289 1.23342 1.17491 1.78195 1.10316 1.06386 1.13359 1.22646 0.91948 0.91800 0.96008 0.91880 0.93032 0.92998 0.90777 0.91101 0.92609 0.92315 0.89173 0.92748 0.92070 0.90302 0.90253 0.86973 0.87971 0.75997 0.95279 0.91908 0.79788 0.94144 0.87231 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.70 16 2 C -0.12 -1.07 5.69 30.59 0.17 -0.89 16 3 C -0.10 -1.25 4.19 30.59 0.13 -1.12 16 4 C -0.10 -1.21 2.27 -11.54 -0.03 -1.24 16 5 H 0.11 0.87 6.58 -2.39 -0.02 0.85 16 6 C -0.14 -1.37 8.78 71.98 0.63 -0.73 16 7 C 0.53 9.27 6.90 87.66 0.60 9.88 16 8 O -0.57 -14.73 16.60 -3.04 -0.05 -14.78 16 9 N -0.62 -8.28 3.33 -811.78 -2.70 -10.98 16 10 C 0.11 1.32 6.87 86.73 0.60 1.92 16 11 C -0.13 -1.40 6.31 31.79 0.20 -1.20 16 12 C 0.13 1.72 4.12 46.38 0.19 1.91 16 13 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 14 N -0.27 -6.27 3.40 -320.58 -1.09 -7.36 16 15 C -0.02 -0.42 10.61 83.49 0.89 0.47 16 16 C -0.03 -1.18 6.62 41.60 0.28 -0.90 16 17 C 0.23 9.36 6.82 85.63 0.58 9.94 16 18 N -0.74 -37.90 5.59 -347.18 -1.94 -39.84 16 19 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 21 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 22 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16 23 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 27 N -0.29 -11.37 12.41 -48.60 -0.60 -11.98 16 28 N -0.10 -3.30 13.16 37.02 0.49 -2.81 16 29 C 0.10 1.08 6.42 86.86 0.56 1.64 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.54 6.70 -2.39 -0.02 0.53 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.06 0.93 8.02 -2.39 -0.02 0.91 16 37 H 0.09 0.58 6.86 -2.39 -0.02 0.56 16 38 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.10 1.00 6.24 -2.39 -0.01 0.99 16 44 H 0.22 3.84 6.82 -2.91 -0.02 3.82 16 45 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.37 20.86 7.66 -92.70 -0.71 20.15 16 48 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 49 H 0.11 0.90 6.69 -2.39 -0.02 0.89 16 50 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.51 405.13 3.46 -74.04 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.23 Total: 23.18 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 6.82 Total: 2.43 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -5.56 Total: -132.73 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.05 Total: -14.78 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -77.51 3.46 -74.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.248 kcal (2) G-P(sol) polarization free energy of solvation -77.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.12 seconds