Wall clock time and date at job start Tue Mar 31 2020 20:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47322 * 2 1 4 4 C 1.52997 * 109.47161 * 299.99692 * 3 2 1 5 5 C 1.53000 * 109.47251 * 59.99986 * 3 2 1 6 6 C 1.50708 * 109.47217 * 179.97438 * 3 2 1 7 7 O 1.21283 * 119.99318 * 354.77572 * 6 3 2 8 8 N 1.34779 * 120.00019 * 174.77118 * 6 3 2 9 9 C 1.47423 * 125.64346 * 174.69007 * 8 6 3 10 10 C 1.55129 * 104.71732 * 155.81877 * 9 8 6 11 11 C 1.55160 * 101.48657 * 37.29867 * 10 9 8 12 12 H 1.08999 * 110.71985 * 82.69489 * 11 10 9 13 13 N 1.46501 * 110.86946 * 205.89795 * 11 10 9 14 14 C 1.35311 * 125.87196 * 28.61059 * 13 11 10 15 15 C 1.35350 * 106.17419 * 180.02562 * 14 13 11 16 16 C 1.50701 * 126.74790 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47497 * 94.99805 * 16 15 14 18 18 C 1.36931 * 120.00264 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00211 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00133 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00082 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46785 * 60.00120 * 22 20 18 24 24 H 1.48504 * 109.47185 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47486 * 300.00284 * 22 20 18 26 26 N 1.33771 * 106.49826 * 359.97438 * 15 14 13 27 27 N 1.28629 * 108.88768 * 359.73768 * 26 15 14 28 28 C 1.47021 * 125.64686 * 355.00521 * 8 6 3 29 29 H 1.09007 * 109.47126 * 300.00369 * 1 2 3 30 30 H 1.09000 * 109.47533 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47062 * 59.99989 * 1 2 3 32 32 H 1.09001 * 109.46767 * 119.99942 * 2 1 3 33 33 H 1.09001 * 109.46916 * 239.99255 * 2 1 3 34 34 H 1.08996 * 109.46970 * 41.85896 * 4 3 2 35 35 H 1.09006 * 109.47549 * 161.85868 * 4 3 2 36 36 H 1.09007 * 109.47058 * 281.85907 * 4 3 2 37 37 H 1.08992 * 109.47180 * 67.10062 * 5 3 2 38 38 H 1.09000 * 109.46877 * 187.10000 * 5 3 2 39 39 H 1.09001 * 109.46745 * 307.09487 * 5 3 2 40 40 H 1.08992 * 110.36890 * 274.74531 * 9 8 6 41 41 H 1.09000 * 110.36468 * 37.07506 * 9 8 6 42 42 H 1.09000 * 111.19618 * 279.19447 * 10 9 8 43 43 H 1.09005 * 110.90467 * 155.27252 * 10 9 8 44 44 H 1.07999 * 126.91420 * 359.97228 * 14 13 11 45 45 H 1.09008 * 109.47017 * 214.99807 * 16 15 14 46 46 H 1.09003 * 109.47365 * 334.99142 * 16 15 14 47 47 H 0.96998 * 119.99476 * 0.02562 * 17 16 15 48 48 H 0.96998 * 120.00762 * 180.02562 * 21 20 18 49 49 H 1.08998 * 109.88215 * 300.43193 * 28 8 6 50 50 H 1.08995 * 109.88622 * 61.44883 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1637 1.2492 6 6 3.5471 1.4424 0.0006 7 8 4.1533 0.3963 0.0967 8 7 4.2210 2.6047 -0.1056 9 6 5.6836 2.7617 -0.0081 10 6 5.9926 4.0675 -0.7865 11 6 4.7727 4.9486 -0.4084 12 1 4.9282 5.4283 0.5579 13 7 4.5104 5.9495 -1.4456 14 6 4.7932 5.8197 -2.7624 15 6 4.3889 6.9699 -3.3501 16 6 4.4874 7.3181 -4.8130 17 7 3.2242 6.9911 -5.4790 18 6 3.0774 7.2229 -6.8206 19 1 3.8927 7.6472 -7.3876 20 6 1.8803 6.9135 -7.4515 21 7 0.8861 6.3978 -6.7602 22 14 1.6798 7.2304 -9.2815 23 1 2.6941 6.4485 -10.0332 24 1 0.3194 6.8163 -9.7094 25 1 1.8668 8.6776 -9.5567 26 7 3.8846 7.7369 -2.3769 27 7 3.9659 7.1014 -1.2616 28 6 3.6188 3.9268 -0.3315 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8901 32 1 1.8932 -0.5138 0.8900 33 1 1.8933 -0.5140 -0.8899 34 1 0.4883 1.8951 -1.4240 35 1 1.6081 3.2412 -1.1041 36 1 2.1307 1.8686 -2.1098 37 1 1.9933 1.7285 2.1346 38 1 1.7860 3.2215 1.1879 39 1 0.4474 2.0551 1.3149 40 1 5.9861 2.8584 1.0346 41 1 6.1879 1.9148 -0.4734 42 1 6.0262 3.8872 -1.8610 43 1 6.9224 4.5173 -0.4381 44 1 5.2505 4.9697 -3.2469 45 1 4.6892 8.3840 -4.9200 46 1 5.2968 6.7476 -5.2686 47 1 2.4915 6.6110 -4.9695 48 1 0.0497 6.1812 -7.2011 49 1 3.0620 3.9253 -1.2685 50 1 2.9534 4.1771 0.4946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098710551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:43 Heat of formation + Delta-G solvation = 86.272031 kcal Electronic energy + Delta-G solvation = -29803.422282 eV Core-core repulsion = 25868.835430 eV Total energy + Delta-G solvation = -3934.586852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.11816 -40.96677 -38.38134 -36.65123 -35.07777 -33.99550 -32.06624 -31.52979 -30.02049 -29.98580 -29.05849 -27.76180 -25.91240 -25.69171 -24.27076 -23.26743 -22.77561 -21.13071 -20.76066 -20.58775 -19.19210 -17.74324 -17.20173 -17.04919 -16.60838 -15.86257 -15.73856 -15.27857 -14.90285 -14.78125 -14.52754 -14.36833 -14.09365 -13.73854 -13.62777 -13.44712 -13.19089 -12.95017 -12.74775 -12.72080 -12.58808 -12.48362 -12.17628 -12.02037 -11.93052 -11.59513 -11.56189 -11.40852 -11.26548 -10.92907 -10.89594 -10.85240 -10.80281 -10.49235 -10.14450 -10.04168 -9.87073 -9.73901 -9.10039 -8.92147 -8.87427 -6.93284 -5.75106 -3.04744 1.69957 2.09184 2.29434 2.63357 2.84988 3.45787 3.50167 3.51248 3.64849 3.80489 4.07547 4.28069 4.34496 4.40396 4.50251 4.59887 4.62509 4.73576 4.80981 4.91408 5.01759 5.09278 5.14409 5.16598 5.21454 5.25563 5.30120 5.34978 5.37513 5.43352 5.48999 5.53990 5.60844 5.63881 5.69062 5.74324 5.76861 5.82271 5.87681 6.04380 6.15347 6.16837 6.35410 6.61879 6.68640 6.74899 7.01545 7.69808 7.78574 8.42094 8.76659 9.54044 10.09150 10.45188 11.47567 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.003071 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.656043 B = 9116.565483 C =10822.158622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.098 4.098 3 C -0.078 4.078 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.546 3.454 7 O -0.534 6.534 8 N -0.617 5.617 9 C 0.108 3.892 10 C -0.143 4.143 11 C 0.136 3.864 12 H 0.129 0.871 13 N -0.295 5.295 14 C -0.042 4.042 15 C -0.002 4.002 16 C 0.232 3.768 17 N -0.725 5.725 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 N -0.250 5.250 27 N -0.093 5.093 28 C 0.080 3.920 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.187 0.813 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.094 0.906 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.858 -11.187 19.427 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 C -0.081 4.081 4 C -0.216 4.216 5 C -0.205 4.205 6 C 0.335 3.665 7 O -0.410 6.410 8 N -0.352 5.352 9 C -0.015 4.015 10 C -0.181 4.181 11 C 0.033 3.967 12 H 0.147 0.853 13 N -0.089 5.089 14 C -0.192 4.192 15 C -0.139 4.139 16 C 0.103 3.897 17 N -0.370 5.370 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 N -0.118 5.118 27 N -0.072 5.072 28 C -0.044 4.044 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.204 0.796 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.112 0.888 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.558 -10.813 20.360 23.968 hybrid contribution 0.065 -0.704 -1.532 1.687 sum 6.623 -11.517 18.828 23.043 Atomic orbital electron populations 1.21979 0.95243 1.01994 1.02342 1.21337 0.95692 0.93288 1.03318 1.20794 0.90355 0.98797 0.98180 1.22260 1.02911 1.00672 0.95775 1.22040 1.02564 1.00160 0.95721 1.20399 0.89750 0.81551 0.74800 1.90704 1.70361 1.30352 1.49570 1.48323 1.07421 1.06518 1.72954 1.22276 0.81085 0.97590 1.00556 1.23332 0.97351 0.94458 1.03003 1.22514 0.95955 0.87062 0.91185 0.85319 1.47121 1.41006 1.13517 1.07238 1.23292 1.09171 1.02914 0.83851 1.22473 1.01396 0.91672 0.98364 1.18959 0.91064 0.98423 0.81274 1.42279 1.11312 1.76483 1.06927 1.19180 0.98245 1.35188 0.84607 0.90950 1.24740 0.96196 1.01716 0.98091 1.69661 1.04293 1.49009 1.35077 0.86246 0.76771 0.77952 0.85070 1.21236 1.21715 1.21171 1.75114 1.16694 1.24919 0.95027 1.78293 1.15625 0.92247 1.20985 1.22829 0.95430 0.81824 1.04305 0.92278 0.92404 0.91919 0.91225 0.91259 0.90330 0.91208 0.91918 0.92169 0.91781 0.90519 0.90501 0.89111 0.88638 0.87965 0.79624 0.94280 0.94489 0.78129 0.93465 0.88783 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.28 37.16 0.34 -0.84 16 2 C -0.10 -0.90 4.29 -26.74 -0.11 -1.02 16 3 C -0.08 -0.71 0.52 -155.66 -0.08 -0.80 16 4 C -0.16 -1.53 7.53 37.16 0.28 -1.25 16 5 C -0.15 -1.09 8.10 37.16 0.30 -0.79 16 6 C 0.55 6.01 6.49 -10.98 -0.07 5.94 16 7 O -0.53 -7.60 16.21 5.55 0.09 -7.51 16 8 N -0.62 -5.51 3.32 -170.38 -0.57 -6.07 16 9 C 0.11 0.75 6.94 -2.41 -0.02 0.74 16 10 C -0.14 -0.89 6.45 -24.46 -0.16 -1.05 16 11 C 0.14 1.11 4.00 -66.09 -0.26 0.85 16 12 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 13 N -0.29 -3.73 3.30 -52.98 -0.17 -3.91 16 14 C -0.04 -0.60 10.60 -17.05 -0.18 -0.78 16 15 C 0.00 -0.03 6.62 -82.78 -0.55 -0.58 16 16 C 0.23 4.76 6.82 -5.19 -0.04 4.72 16 17 N -0.73 -18.63 5.59 -61.08 -0.34 -18.97 16 18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 N -0.25 -4.86 12.41 33.29 0.41 -4.45 16 27 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 28 C 0.08 0.68 4.83 -3.06 -0.01 0.66 16 29 H 0.06 0.39 6.28 -51.93 -0.33 0.06 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.48 6.09 -51.92 -0.32 0.16 16 32 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.70 5.69 -51.93 -0.30 0.41 16 35 H 0.07 0.67 5.07 -51.93 -0.26 0.40 16 36 H 0.06 0.68 8.00 -51.93 -0.42 0.26 16 37 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 38 H 0.06 0.44 5.20 -51.93 -0.27 0.17 16 39 H 0.08 0.50 6.08 -51.93 -0.32 0.18 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.71 7.99 -51.93 -0.41 0.30 16 42 H 0.10 0.65 6.29 -51.93 -0.33 0.33 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.19 2.10 6.85 -52.49 -0.36 1.74 16 45 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 46 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.39 10.64 7.66 -40.82 -0.31 10.33 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.09 0.97 5.59 -51.93 -0.29 0.68 16 50 H 0.09 0.67 5.66 -51.93 -0.29 0.37 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -34.97 387.66 -6.59 -41.57 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.55 Total: 5.97 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -0.81 Total: -1.47 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.85 Total: -61.70 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.09 Total: -7.51 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.97 -6.59 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098710551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.838 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds