Wall clock time and date at job start Tue Mar 31 2020 20:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47322 * 2 1 4 4 C 1.52997 * 109.47161 * 299.99692 * 3 2 1 5 5 C 1.53000 * 109.47251 * 59.99986 * 3 2 1 6 6 C 1.50708 * 109.47217 * 179.97438 * 3 2 1 7 7 O 1.21283 * 119.99318 * 354.77572 * 6 3 2 8 8 N 1.34779 * 120.00019 * 174.77118 * 6 3 2 9 9 C 1.47423 * 125.64346 * 174.69007 * 8 6 3 10 10 C 1.55129 * 104.71732 * 155.81877 * 9 8 6 11 11 C 1.55160 * 101.48657 * 37.29867 * 10 9 8 12 12 H 1.08999 * 110.71985 * 82.69489 * 11 10 9 13 13 N 1.46501 * 110.86946 * 205.89795 * 11 10 9 14 14 C 1.35311 * 125.87196 * 28.61059 * 13 11 10 15 15 C 1.35350 * 106.17419 * 180.02562 * 14 13 11 16 16 C 1.50701 * 126.74790 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47497 * 94.99805 * 16 15 14 18 18 C 1.36931 * 120.00264 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00211 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00133 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00082 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46785 * 60.00120 * 22 20 18 24 24 H 1.48504 * 109.47185 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47486 * 300.00284 * 22 20 18 26 26 N 1.33771 * 106.49826 * 359.97438 * 15 14 13 27 27 N 1.28629 * 108.88768 * 359.73768 * 26 15 14 28 28 C 1.47021 * 125.64686 * 355.00521 * 8 6 3 29 29 H 1.09007 * 109.47126 * 300.00369 * 1 2 3 30 30 H 1.09000 * 109.47533 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47062 * 59.99989 * 1 2 3 32 32 H 1.09001 * 109.46767 * 119.99942 * 2 1 3 33 33 H 1.09001 * 109.46916 * 239.99255 * 2 1 3 34 34 H 1.08996 * 109.46970 * 41.85896 * 4 3 2 35 35 H 1.09006 * 109.47549 * 161.85868 * 4 3 2 36 36 H 1.09007 * 109.47058 * 281.85907 * 4 3 2 37 37 H 1.08992 * 109.47180 * 67.10062 * 5 3 2 38 38 H 1.09000 * 109.46877 * 187.10000 * 5 3 2 39 39 H 1.09001 * 109.46745 * 307.09487 * 5 3 2 40 40 H 1.08992 * 110.36890 * 274.74531 * 9 8 6 41 41 H 1.09000 * 110.36468 * 37.07506 * 9 8 6 42 42 H 1.09000 * 111.19618 * 279.19447 * 10 9 8 43 43 H 1.09005 * 110.90467 * 155.27252 * 10 9 8 44 44 H 1.07999 * 126.91420 * 359.97228 * 14 13 11 45 45 H 1.09008 * 109.47017 * 214.99807 * 16 15 14 46 46 H 1.09003 * 109.47365 * 334.99142 * 16 15 14 47 47 H 0.96998 * 119.99476 * 0.02562 * 17 16 15 48 48 H 0.96998 * 120.00762 * 180.02562 * 21 20 18 49 49 H 1.08998 * 109.88215 * 300.43193 * 28 8 6 50 50 H 1.08995 * 109.88622 * 61.44883 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1637 1.2492 6 6 3.5471 1.4424 0.0006 7 8 4.1533 0.3963 0.0967 8 7 4.2210 2.6047 -0.1056 9 6 5.6836 2.7617 -0.0081 10 6 5.9926 4.0675 -0.7865 11 6 4.7727 4.9486 -0.4084 12 1 4.9282 5.4283 0.5579 13 7 4.5104 5.9495 -1.4456 14 6 4.7932 5.8197 -2.7624 15 6 4.3889 6.9699 -3.3501 16 6 4.4874 7.3181 -4.8130 17 7 3.2242 6.9911 -5.4790 18 6 3.0774 7.2229 -6.8206 19 1 3.8927 7.6472 -7.3876 20 6 1.8803 6.9135 -7.4515 21 7 0.8861 6.3978 -6.7602 22 14 1.6798 7.2304 -9.2815 23 1 2.6941 6.4485 -10.0332 24 1 0.3194 6.8163 -9.7094 25 1 1.8668 8.6776 -9.5567 26 7 3.8846 7.7369 -2.3769 27 7 3.9659 7.1014 -1.2616 28 6 3.6188 3.9268 -0.3315 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8901 32 1 1.8932 -0.5138 0.8900 33 1 1.8933 -0.5140 -0.8899 34 1 0.4883 1.8951 -1.4240 35 1 1.6081 3.2412 -1.1041 36 1 2.1307 1.8686 -2.1098 37 1 1.9933 1.7285 2.1346 38 1 1.7860 3.2215 1.1879 39 1 0.4474 2.0551 1.3149 40 1 5.9861 2.8584 1.0346 41 1 6.1879 1.9148 -0.4734 42 1 6.0262 3.8872 -1.8610 43 1 6.9224 4.5173 -0.4381 44 1 5.2505 4.9697 -3.2469 45 1 4.6892 8.3840 -4.9200 46 1 5.2968 6.7476 -5.2686 47 1 2.4915 6.6110 -4.9695 48 1 0.0497 6.1812 -7.2011 49 1 3.0620 3.9253 -1.2685 50 1 2.9534 4.1771 0.4946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098710551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:42 Heat of formation + Delta-G solvation = 62.157929 kcal Electronic energy + Delta-G solvation = -29804.467948 eV Core-core repulsion = 25868.835430 eV Total energy + Delta-G solvation = -3935.632518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.31210 -41.75869 -39.15906 -37.46056 -36.80755 -35.18842 -33.69981 -32.41393 -31.62219 -30.78301 -29.81564 -28.45840 -27.63740 -26.46545 -25.06537 -24.81477 -24.00661 -22.28965 -21.65130 -21.52159 -19.94162 -19.36539 -18.41561 -17.97479 -17.52654 -16.96127 -16.58981 -16.54993 -16.08787 -15.85833 -15.53416 -15.43325 -15.17648 -15.03035 -14.78316 -14.36739 -14.24076 -14.16390 -13.72436 -13.60705 -13.52853 -13.26058 -13.16671 -13.01859 -12.78125 -12.72619 -12.65888 -12.55703 -12.30704 -12.27047 -12.12042 -11.97722 -11.86696 -11.77194 -11.63110 -11.55800 -11.07702 -10.93305 -10.77165 -10.22151 -9.84647 -9.00208 -7.91895 -5.21871 0.55369 1.17808 1.45053 1.45897 1.52336 1.54329 1.60459 1.87505 2.60691 2.98327 3.12266 3.26624 3.40429 3.47457 3.65677 3.69831 3.77964 3.83277 3.93192 4.04746 4.11061 4.21382 4.24308 4.29071 4.35854 4.39971 4.47813 4.55675 4.60379 4.64996 4.69621 4.71470 4.80037 4.84079 4.87790 4.89813 5.00318 5.02501 5.03720 5.13131 5.14345 5.17632 5.20150 5.35673 5.50463 5.52476 5.64973 6.23302 6.27784 6.96455 7.35081 7.50674 8.06338 8.32149 9.31691 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.003071 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.656043 B = 9116.565483 C =10822.158622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 C -0.076 4.076 4 C -0.156 4.156 5 C -0.144 4.144 6 C 0.540 3.460 7 O -0.573 6.573 8 N -0.613 5.613 9 C 0.105 3.895 10 C -0.131 4.131 11 C 0.130 3.870 12 H 0.156 0.844 13 N -0.275 5.275 14 C -0.018 4.018 15 C -0.033 4.033 16 C 0.234 3.766 17 N -0.738 5.738 18 C -0.245 4.245 19 H 0.083 0.917 20 C -0.074 4.074 21 N -0.971 5.971 22 Si 0.976 3.024 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.279 1.279 26 N -0.294 5.294 27 N -0.101 5.101 28 C 0.083 3.917 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.130 0.870 44 H 0.217 0.783 45 H 0.030 0.970 46 H 0.061 0.939 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.076 0.924 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 -11.293 20.331 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 C -0.079 4.079 4 C -0.213 4.213 5 C -0.201 4.201 6 C 0.330 3.670 7 O -0.452 6.452 8 N -0.347 5.347 9 C -0.017 4.017 10 C -0.170 4.170 11 C 0.029 3.971 12 H 0.173 0.827 13 N -0.069 5.069 14 C -0.170 4.170 15 C -0.171 4.171 16 C 0.106 3.894 17 N -0.381 5.381 18 C -0.377 4.377 19 H 0.101 0.899 20 C -0.266 4.266 21 N -0.621 5.621 22 Si 0.804 3.196 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.205 1.205 26 N -0.161 5.161 27 N -0.079 5.079 28 C -0.041 4.041 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.148 0.852 44 H 0.234 0.766 45 H 0.048 0.952 46 H 0.078 0.922 47 H 0.202 0.798 48 H 0.059 0.941 49 H 0.094 0.906 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.810 -10.880 21.291 25.153 hybrid contribution -0.215 -0.714 -1.714 1.869 sum 7.594 -11.594 19.577 23.987 Atomic orbital electron populations 1.21957 0.93791 1.02571 1.02839 1.21305 0.96903 0.93196 1.02100 1.20799 0.89388 0.98891 0.98814 1.22229 1.02953 1.00736 0.95360 1.22036 1.03237 1.00229 0.94620 1.20710 0.90469 0.81495 0.74285 1.90683 1.71179 1.31699 1.51628 1.48334 1.08435 1.06146 1.71797 1.22454 0.79715 0.97630 1.01930 1.23357 0.97489 0.93351 1.02772 1.22983 0.96674 0.86359 0.91106 0.82650 1.47397 1.38798 1.13064 1.07677 1.23569 1.07143 1.02087 0.84180 1.22218 1.03962 0.93521 0.97363 1.18972 0.89369 0.98061 0.82962 1.42476 1.12720 1.76413 1.06486 1.19646 0.98405 1.33809 0.85828 0.89891 1.25581 0.96119 1.02392 1.02494 1.69831 1.04670 1.50896 1.36738 0.85183 0.76419 0.78005 0.79964 1.19917 1.22380 1.20507 1.75050 1.18315 1.26694 0.96033 1.78182 1.16221 0.93459 1.20047 1.22804 0.95642 0.81615 1.04055 0.90990 0.91875 0.92105 0.91811 0.93135 0.89724 0.91079 0.93712 0.91948 0.91079 0.89396 0.88408 0.89976 0.89031 0.85194 0.76645 0.95247 0.92166 0.79761 0.94082 0.90631 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.28 71.98 0.67 -1.50 16 2 C -0.10 -1.77 4.29 30.59 0.13 -1.64 16 3 C -0.08 -1.34 0.52 -52.93 -0.03 -1.37 16 4 C -0.16 -2.95 7.53 71.98 0.54 -2.41 16 5 C -0.14 -1.88 8.10 71.98 0.58 -1.29 16 6 C 0.54 11.60 6.49 87.66 0.57 12.17 16 7 O -0.57 -16.39 16.21 -3.04 -0.05 -16.44 16 8 N -0.61 -9.93 3.32 -811.36 -2.69 -12.62 16 9 C 0.10 1.20 6.94 86.93 0.60 1.80 16 10 C -0.13 -1.17 6.45 32.06 0.21 -0.97 16 11 C 0.13 1.72 4.00 46.18 0.18 1.90 16 12 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 13 N -0.28 -6.36 3.30 -321.53 -1.06 -7.42 16 14 C -0.02 -0.48 10.60 83.49 0.89 0.40 16 15 C -0.03 -1.17 6.62 41.60 0.28 -0.89 16 16 C 0.23 9.53 6.82 85.63 0.58 10.12 16 17 N -0.74 -38.19 5.59 -347.17 -1.94 -40.13 16 18 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 20 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 21 N -0.97 -59.94 13.06 21.65 0.28 -59.66 16 22 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 N -0.29 -11.38 12.41 -48.60 -0.60 -11.98 16 27 N -0.10 -3.17 13.17 37.02 0.49 -2.69 16 28 C 0.08 1.22 4.83 86.73 0.42 1.64 16 29 H 0.07 0.82 6.28 -2.38 -0.01 0.81 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.88 6.09 -2.38 -0.01 0.86 16 32 H 0.06 1.23 8.04 -2.39 -0.02 1.21 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.48 5.69 -2.39 -0.01 1.47 16 35 H 0.07 1.31 5.07 -2.38 -0.01 1.30 16 36 H 0.04 0.99 8.00 -2.38 -0.02 0.97 16 37 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 38 H 0.07 0.81 5.20 -2.39 -0.01 0.80 16 39 H 0.09 0.96 6.08 -2.39 -0.01 0.94 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 1.15 7.99 -2.39 -0.02 1.13 16 42 H 0.09 0.95 6.29 -2.39 -0.02 0.93 16 43 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.22 4.22 6.85 -2.91 -0.02 4.20 16 45 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.37 20.95 7.66 -92.71 -0.71 20.24 16 48 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 49 H 0.08 1.46 5.59 -2.39 -0.01 1.45 16 50 H 0.11 1.28 5.66 -2.39 -0.01 1.27 16 Total: -1.00 -77.44 387.66 3.64 -73.80 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.26 Total: 27.79 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.93 Total: 1.36 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -5.53 Total: -134.50 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.05 Total: -16.44 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -77.44 3.64 -73.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098710551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.956 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds