Wall clock time and date at job start Tue Mar 31 2020 20:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 C 1.53009 * 109.47075 * 300.00079 * 3 2 1 5 5 C 1.52999 * 109.47173 * 59.99606 * 3 2 1 6 6 C 1.50697 * 109.47148 * 179.97438 * 3 2 1 7 7 O 1.21280 * 120.00025 * 354.12894 * 6 3 2 8 8 N 1.34780 * 119.99885 * 174.13321 * 6 3 2 9 9 C 1.47421 * 125.64607 * 174.37073 * 8 6 3 10 10 C 1.54912 * 104.83055 * 204.08629 * 9 8 6 11 11 C 1.55152 * 101.58163 * 322.98992 * 10 9 8 12 12 H 1.09004 * 110.71945 * 276.96196 * 11 10 9 13 13 N 1.46498 * 110.72305 * 153.86483 * 11 10 9 14 14 C 1.35316 * 125.86787 * 326.16598 * 13 11 10 15 15 C 1.35349 * 106.17736 * 179.90543 * 14 13 11 16 16 C 1.50702 * 126.75456 * 180.13056 * 15 14 13 17 17 N 1.46500 * 109.47248 * 95.24341 * 16 15 14 18 18 C 1.36936 * 119.99648 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00333 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99424 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00532 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99853 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46743 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47058 * 119.99729 * 22 20 18 25 25 H 1.48495 * 109.47072 * 240.00164 * 22 20 18 26 26 N 1.33774 * 106.49256 * 0.35204 * 15 14 13 27 27 N 1.28633 * 108.88865 * 359.77424 * 26 15 14 28 28 C 1.47027 * 125.64837 * 354.05149 * 8 6 3 29 29 H 1.09003 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47636 * 300.00413 * 1 2 3 31 31 H 1.09000 * 109.47299 * 60.00272 * 1 2 3 32 32 H 1.09000 * 109.47008 * 239.99978 * 2 1 3 33 33 H 1.09000 * 109.47299 * 119.99728 * 2 1 3 34 34 H 1.08994 * 109.47156 * 166.39406 * 4 3 2 35 35 H 1.09003 * 109.46251 * 286.39791 * 4 3 2 36 36 H 1.09003 * 109.46798 * 46.39376 * 4 3 2 37 37 H 1.09002 * 109.47356 * 300.50655 * 5 3 2 38 38 H 1.08998 * 109.46999 * 60.50837 * 5 3 2 39 39 H 1.09000 * 109.47459 * 180.50445 * 5 3 2 40 40 H 1.08998 * 110.36870 * 322.92410 * 9 8 6 41 41 H 1.08994 * 110.37250 * 85.13693 * 9 8 6 42 42 H 1.09001 * 111.00363 * 81.05809 * 10 9 8 43 43 H 1.08999 * 111.00583 * 204.87605 * 10 9 8 44 44 H 1.07999 * 126.90842 * 0.02562 * 14 13 11 45 45 H 1.08997 * 109.46924 * 215.24646 * 16 15 14 46 46 H 1.09003 * 109.46561 * 335.24430 * 16 15 14 47 47 H 0.97004 * 120.00101 * 359.97438 * 17 16 15 48 48 H 0.97008 * 120.00118 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.88253 * 298.40351 * 28 8 6 50 50 H 1.09000 * 109.87675 * 59.56548 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2493 5 6 1.5299 2.1638 1.2492 6 6 3.5469 1.4425 0.0006 7 8 4.1533 0.3978 0.1085 8 7 4.2208 2.6037 -0.1186 9 6 5.6828 2.7629 -0.0162 10 6 5.8928 4.2412 0.3964 11 6 4.7689 4.9506 -0.4041 12 1 5.0886 5.1452 -1.4279 13 7 4.3678 6.1949 0.2570 14 6 4.3410 6.4101 1.5927 15 6 3.9150 7.6837 1.7610 16 6 3.7191 8.4034 3.0705 17 7 4.9200 9.1817 3.3843 18 6 4.9742 9.9230 4.5344 19 1 4.1315 9.9343 5.2099 20 6 6.1122 10.6600 4.8320 21 7 7.1393 10.6459 4.0092 22 14 6.1860 11.6718 6.4006 23 1 4.9122 11.5189 7.1486 24 1 7.3137 11.1982 7.2426 25 1 6.3907 13.1021 6.0578 26 7 3.6973 8.1763 0.5365 27 7 3.9749 7.2695 -0.3326 28 6 3.6202 3.9202 -0.3788 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6822 3.2372 -1.1368 35 1 2.0771 1.8086 -2.1226 36 1 0.4671 1.9592 -1.3785 37 1 0.4399 2.1560 1.2537 38 1 1.9006 1.6553 2.1391 39 1 1.8858 3.1941 1.2447 40 1 6.0847 2.0955 0.7462 41 1 6.1544 2.5654 -0.9788 42 1 5.7501 4.3715 1.4692 43 1 6.8763 4.5967 0.0891 44 1 4.6080 5.7075 2.3683 45 1 2.8624 9.0728 2.9925 46 1 3.5407 7.6755 3.8619 47 1 5.6770 9.1713 2.7778 48 1 7.9345 11.1612 4.2170 49 1 3.1072 3.9101 -1.3405 50 1 2.9175 4.1706 0.4160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098710552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:47 Heat of formation + Delta-G solvation = 86.011303 kcal Electronic energy + Delta-G solvation = -29528.640078 eV Core-core repulsion = 25594.041919 eV Total energy + Delta-G solvation = -3934.598158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.12801 -41.06084 -38.43927 -36.76535 -35.09055 -34.01886 -32.08248 -31.59818 -30.09690 -29.99582 -29.14623 -27.90448 -25.94477 -25.77183 -24.34476 -23.26916 -22.78745 -21.16090 -20.80619 -20.66740 -19.30174 -17.74645 -17.16489 -17.15096 -16.64164 -15.91865 -15.89271 -15.40950 -14.85437 -14.76736 -14.59110 -14.45655 -14.16415 -13.84359 -13.66199 -13.43575 -13.20821 -13.08688 -12.84178 -12.75361 -12.71528 -12.50808 -12.36112 -12.03133 -11.97605 -11.72040 -11.68677 -11.44217 -11.27204 -11.04085 -11.01474 -10.91380 -10.83895 -10.51017 -10.12774 -10.06374 -9.90310 -9.75167 -9.17737 -8.93253 -8.88781 -6.93644 -5.75661 -3.05403 1.69593 2.04064 2.20669 2.58423 2.84218 3.44516 3.50084 3.52447 3.65361 3.76524 3.98755 4.19302 4.29110 4.36684 4.37823 4.57061 4.61496 4.67802 4.72557 4.84982 4.88397 4.95307 5.01062 5.10366 5.17909 5.22016 5.23675 5.26301 5.33714 5.35941 5.38104 5.49563 5.49727 5.54900 5.59710 5.60630 5.67919 5.74089 5.79260 5.87306 6.00699 6.14777 6.34613 6.60833 6.67891 6.74123 6.94364 7.69846 7.70214 8.41422 8.76089 9.53486 10.08717 10.44527 11.47077 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.002305 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.019512 B =12144.327083 C =12379.003348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.099 4.099 3 C -0.078 4.078 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.544 3.456 7 O -0.532 6.532 8 N -0.617 5.617 9 C 0.108 3.892 10 C -0.144 4.144 11 C 0.136 3.864 12 H 0.131 0.869 13 N -0.294 5.294 14 C -0.043 4.043 15 C -0.001 4.001 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.250 5.250 27 N -0.093 5.093 28 C 0.083 3.917 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.186 0.814 45 H 0.040 0.960 46 H 0.037 0.963 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.096 0.904 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 -23.102 -11.633 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.137 4.137 3 C -0.081 4.081 4 C -0.217 4.217 5 C -0.205 4.205 6 C 0.333 3.667 7 O -0.408 6.408 8 N -0.352 5.352 9 C -0.014 4.014 10 C -0.182 4.182 11 C 0.032 3.968 12 H 0.148 0.852 13 N -0.088 5.088 14 C -0.193 4.193 15 C -0.139 4.139 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.118 5.118 27 N -0.071 5.071 28 C -0.041 4.041 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.203 0.797 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.064 0.936 49 H 0.114 0.886 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.340 -22.998 -12.772 28.266 hybrid contribution 0.803 0.088 1.552 1.750 sum -9.537 -22.910 -11.220 27.235 Atomic orbital electron populations 1.21952 0.95270 1.02001 1.02212 1.21349 0.95641 0.93296 1.03400 1.20785 0.90508 0.98733 0.98092 1.22281 1.02655 1.00819 0.95938 1.22019 1.02382 1.00248 0.95861 1.20366 0.89667 0.81620 0.75040 1.90715 1.70321 1.30386 1.49382 1.48353 1.07679 1.06811 1.72383 1.22247 0.80889 0.95632 1.02657 1.23317 0.99041 0.93970 1.01912 1.22534 0.95060 0.80031 0.99172 0.85154 1.47114 1.44620 1.11517 1.05590 1.23279 1.09261 1.00461 0.86271 1.22476 1.03126 0.92250 0.96014 1.18958 0.92133 0.92777 0.85833 1.42306 1.14133 1.55133 1.25480 1.19266 0.99802 1.20383 0.97561 0.90828 1.24763 0.96484 1.00871 0.98828 1.69689 1.05566 1.45497 1.37245 0.86091 0.77291 0.79927 0.82710 1.20455 1.21915 1.21837 1.75119 1.16760 1.20995 0.98881 1.78297 1.16408 0.90006 1.22390 1.22819 0.95555 0.82139 1.03596 0.92401 0.92184 0.92231 0.91386 0.91045 0.91101 0.92087 0.90549 0.90634 0.91845 0.91829 0.89192 0.90451 0.88640 0.87714 0.79664 0.94272 0.94503 0.78106 0.93555 0.88639 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.24 37.16 0.34 -0.51 16 2 C -0.10 -0.73 4.30 -26.73 -0.11 -0.84 16 3 C -0.08 -0.57 0.52 -155.66 -0.08 -0.65 16 4 C -0.16 -0.93 7.55 37.16 0.28 -0.65 16 5 C -0.15 -0.99 7.97 37.16 0.30 -0.69 16 6 C 0.54 5.27 6.53 -10.99 -0.07 5.20 16 7 O -0.53 -7.02 16.29 5.56 0.09 -6.93 16 8 N -0.62 -4.90 3.32 -170.52 -0.57 -5.47 16 9 C 0.11 0.76 6.89 -2.53 -0.02 0.74 16 10 C -0.14 -0.99 6.49 -24.58 -0.16 -1.15 16 11 C 0.14 1.10 3.97 -66.09 -0.26 0.84 16 12 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 13 N -0.29 -3.70 3.28 -52.98 -0.17 -3.87 16 14 C -0.04 -0.60 10.59 -17.05 -0.18 -0.78 16 15 C 0.00 -0.02 6.62 -82.78 -0.55 -0.57 16 16 C 0.23 4.74 6.82 -5.19 -0.04 4.70 16 17 N -0.73 -18.65 5.59 -61.09 -0.34 -19.00 16 18 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 N -0.25 -4.84 12.41 33.29 0.41 -4.43 16 27 N -0.09 -1.51 13.16 60.35 0.79 -0.72 16 28 C 0.08 0.58 4.74 -3.06 -0.01 0.57 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.31 6.42 -51.93 -0.33 -0.03 16 31 H 0.06 0.29 6.16 -51.93 -0.32 -0.03 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 34 H 0.07 0.39 4.87 -51.93 -0.25 0.13 16 35 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 36 H 0.08 0.37 5.82 -51.93 -0.30 0.07 16 37 H 0.07 0.42 6.40 -51.93 -0.33 0.09 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.43 5.27 -51.93 -0.27 0.16 16 40 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.72 6.40 -51.93 -0.33 0.39 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.19 2.06 7.02 -52.49 -0.37 1.69 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.39 10.70 7.66 -40.82 -0.31 10.39 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.10 0.56 5.86 -51.93 -0.30 0.26 16 50 H 0.09 0.66 5.43 -51.93 -0.28 0.37 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -35.19 388.50 -6.64 -41.83 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.60 Total: 4.23 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.81 Total: -1.10 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.85 Total: -61.22 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.09 Total: -6.93 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.19 -6.64 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098710552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.843 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds