Wall clock time and date at job start Tue Mar 31 2020 20:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 C 1.53009 * 109.47075 * 300.00079 * 3 2 1 5 5 C 1.52999 * 109.47173 * 59.99606 * 3 2 1 6 6 C 1.50697 * 109.47148 * 179.97438 * 3 2 1 7 7 O 1.21280 * 120.00025 * 354.12894 * 6 3 2 8 8 N 1.34780 * 119.99885 * 174.13321 * 6 3 2 9 9 C 1.47421 * 125.64607 * 174.37073 * 8 6 3 10 10 C 1.54912 * 104.83055 * 204.08629 * 9 8 6 11 11 C 1.55152 * 101.58163 * 322.98992 * 10 9 8 12 12 H 1.09004 * 110.71945 * 276.96196 * 11 10 9 13 13 N 1.46498 * 110.72305 * 153.86483 * 11 10 9 14 14 C 1.35316 * 125.86787 * 326.16598 * 13 11 10 15 15 C 1.35349 * 106.17736 * 179.90543 * 14 13 11 16 16 C 1.50702 * 126.75456 * 180.13056 * 15 14 13 17 17 N 1.46500 * 109.47248 * 95.24341 * 16 15 14 18 18 C 1.36936 * 119.99648 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00333 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99424 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00532 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99853 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46743 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47058 * 119.99729 * 22 20 18 25 25 H 1.48495 * 109.47072 * 240.00164 * 22 20 18 26 26 N 1.33774 * 106.49256 * 0.35204 * 15 14 13 27 27 N 1.28633 * 108.88865 * 359.77424 * 26 15 14 28 28 C 1.47027 * 125.64837 * 354.05149 * 8 6 3 29 29 H 1.09003 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47636 * 300.00413 * 1 2 3 31 31 H 1.09000 * 109.47299 * 60.00272 * 1 2 3 32 32 H 1.09000 * 109.47008 * 239.99978 * 2 1 3 33 33 H 1.09000 * 109.47299 * 119.99728 * 2 1 3 34 34 H 1.08994 * 109.47156 * 166.39406 * 4 3 2 35 35 H 1.09003 * 109.46251 * 286.39791 * 4 3 2 36 36 H 1.09003 * 109.46798 * 46.39376 * 4 3 2 37 37 H 1.09002 * 109.47356 * 300.50655 * 5 3 2 38 38 H 1.08998 * 109.46999 * 60.50837 * 5 3 2 39 39 H 1.09000 * 109.47459 * 180.50445 * 5 3 2 40 40 H 1.08998 * 110.36870 * 322.92410 * 9 8 6 41 41 H 1.08994 * 110.37250 * 85.13693 * 9 8 6 42 42 H 1.09001 * 111.00363 * 81.05809 * 10 9 8 43 43 H 1.08999 * 111.00583 * 204.87605 * 10 9 8 44 44 H 1.07999 * 126.90842 * 0.02562 * 14 13 11 45 45 H 1.08997 * 109.46924 * 215.24646 * 16 15 14 46 46 H 1.09003 * 109.46561 * 335.24430 * 16 15 14 47 47 H 0.97004 * 120.00101 * 359.97438 * 17 16 15 48 48 H 0.97008 * 120.00118 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.88253 * 298.40351 * 28 8 6 50 50 H 1.09000 * 109.87675 * 59.56548 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2493 5 6 1.5299 2.1638 1.2492 6 6 3.5469 1.4425 0.0006 7 8 4.1533 0.3978 0.1085 8 7 4.2208 2.6037 -0.1186 9 6 5.6828 2.7629 -0.0162 10 6 5.8928 4.2412 0.3964 11 6 4.7689 4.9506 -0.4041 12 1 5.0886 5.1452 -1.4279 13 7 4.3678 6.1949 0.2570 14 6 4.3410 6.4101 1.5927 15 6 3.9150 7.6837 1.7610 16 6 3.7191 8.4034 3.0705 17 7 4.9200 9.1817 3.3843 18 6 4.9742 9.9230 4.5344 19 1 4.1315 9.9343 5.2099 20 6 6.1122 10.6600 4.8320 21 7 7.1393 10.6459 4.0092 22 14 6.1860 11.6718 6.4006 23 1 4.9122 11.5189 7.1486 24 1 7.3137 11.1982 7.2426 25 1 6.3907 13.1021 6.0578 26 7 3.6973 8.1763 0.5365 27 7 3.9749 7.2695 -0.3326 28 6 3.6202 3.9202 -0.3788 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6822 3.2372 -1.1368 35 1 2.0771 1.8086 -2.1226 36 1 0.4671 1.9592 -1.3785 37 1 0.4399 2.1560 1.2537 38 1 1.9006 1.6553 2.1391 39 1 1.8858 3.1941 1.2447 40 1 6.0847 2.0955 0.7462 41 1 6.1544 2.5654 -0.9788 42 1 5.7501 4.3715 1.4692 43 1 6.8763 4.5967 0.0891 44 1 4.6080 5.7075 2.3683 45 1 2.8624 9.0728 2.9925 46 1 3.5407 7.6755 3.8619 47 1 5.6770 9.1713 2.7778 48 1 7.9345 11.1612 4.2170 49 1 3.1072 3.9101 -1.3405 50 1 2.9175 4.1706 0.4160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098710552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:46 Heat of formation + Delta-G solvation = 61.807291 kcal Electronic energy + Delta-G solvation = -29529.689642 eV Core-core repulsion = 25594.041919 eV Total energy + Delta-G solvation = -3935.647723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.31213 -41.75646 -39.16176 -37.43402 -36.80947 -35.18711 -33.69513 -32.42428 -31.62021 -30.77141 -29.84316 -28.39853 -27.64843 -26.44548 -25.03321 -24.81818 -23.99774 -22.28303 -21.67288 -21.55221 -19.92405 -19.35762 -18.45927 -17.88320 -17.46935 -16.99115 -16.67577 -16.52177 -16.08778 -15.85125 -15.49071 -15.34797 -15.17720 -15.00186 -14.81853 -14.38120 -14.22694 -14.11610 -13.73211 -13.57059 -13.43199 -13.36372 -13.18417 -13.02653 -12.88883 -12.79704 -12.59301 -12.53044 -12.26198 -12.21465 -12.02645 -12.00367 -11.88044 -11.76757 -11.58101 -11.54973 -11.06339 -10.95803 -10.75958 -10.21943 -9.84806 -9.00407 -7.92414 -5.22348 0.56320 1.15918 1.45968 1.47986 1.51656 1.53045 1.62499 1.87137 2.60356 2.99378 3.10584 3.28156 3.40556 3.47674 3.65979 3.71357 3.81196 3.82311 3.93794 4.03108 4.13978 4.21699 4.26239 4.29469 4.34856 4.40370 4.50984 4.57786 4.62573 4.67614 4.69165 4.72339 4.81893 4.85846 4.88038 4.88628 5.03750 5.04689 5.06533 5.13461 5.14839 5.19852 5.21050 5.37447 5.52579 5.52967 5.64837 6.25986 6.27642 6.97938 7.34681 7.51142 8.06182 8.31516 9.31608 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.002305 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.019512 B =12144.327083 C =12379.003348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.076 4.076 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.539 3.461 7 O -0.575 6.575 8 N -0.613 5.613 9 C 0.108 3.892 10 C -0.136 4.136 11 C 0.128 3.872 12 H 0.149 0.851 13 N -0.275 5.275 14 C -0.018 4.018 15 C -0.032 4.032 16 C 0.234 3.766 17 N -0.739 5.739 18 C -0.240 4.240 19 H 0.085 0.915 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.977 3.023 23 H -0.261 1.261 24 H -0.293 1.293 25 H -0.297 1.297 26 N -0.294 5.294 27 N -0.102 5.102 28 C 0.089 3.911 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.217 0.783 45 H 0.030 0.970 46 H 0.061 0.939 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.113 0.887 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 -23.951 -11.618 28.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.136 4.136 3 C -0.079 4.079 4 C -0.214 4.214 5 C -0.203 4.203 6 C 0.329 3.671 7 O -0.454 6.454 8 N -0.347 5.347 9 C -0.014 4.014 10 C -0.174 4.174 11 C 0.027 3.973 12 H 0.167 0.833 13 N -0.069 5.069 14 C -0.169 4.169 15 C -0.170 4.170 16 C 0.107 3.893 17 N -0.382 5.382 18 C -0.371 4.371 19 H 0.102 0.898 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.806 3.194 23 H -0.186 1.186 24 H -0.220 1.220 25 H -0.225 1.225 26 N -0.161 5.161 27 N -0.080 5.080 28 C -0.035 4.035 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.234 0.766 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.202 0.798 48 H 0.059 0.941 49 H 0.131 0.869 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.472 -23.855 -12.778 29.393 hybrid contribution 1.117 0.221 1.476 1.864 sum -10.355 -23.634 -11.302 28.170 Atomic orbital electron populations 1.21930 0.93581 1.02509 1.02968 1.21315 0.97035 0.93216 1.02006 1.20810 0.88896 0.98934 0.99237 1.22278 1.03377 1.00869 0.94868 1.22015 1.03271 0.99938 0.95035 1.20824 0.90645 0.81329 0.74265 1.90695 1.71287 1.31884 1.51497 1.48366 1.08155 1.06745 1.71470 1.22306 0.80473 0.95429 1.03183 1.23305 0.99132 0.93468 1.01532 1.22965 0.95935 0.78439 0.99980 0.83306 1.47385 1.42461 1.11807 1.05252 1.23560 1.06655 0.99341 0.87366 1.22223 1.05949 0.93864 0.94970 1.18977 0.89664 0.92692 0.88002 1.42513 1.15296 1.55688 1.24664 1.19718 0.99754 1.19592 0.98068 0.89759 1.25619 0.96451 1.02745 1.02213 1.69853 1.06167 1.46943 1.39350 0.85024 0.77778 0.77610 0.79037 1.18555 1.21971 1.22479 1.75057 1.18550 1.22779 0.99703 1.78193 1.16991 0.90698 1.22105 1.22839 0.94971 0.81125 1.04583 0.92130 0.91621 0.91165 0.92504 0.92803 0.90460 0.92302 0.89235 0.89180 0.92829 0.91693 0.89958 0.89155 0.88909 0.86579 0.76613 0.95180 0.92090 0.79787 0.94122 0.86898 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.24 71.98 0.67 -0.75 16 2 C -0.10 -1.38 4.30 30.59 0.13 -1.25 16 3 C -0.08 -1.00 0.52 -52.93 -0.03 -1.02 16 4 C -0.16 -1.45 7.55 71.99 0.54 -0.91 16 5 C -0.15 -1.68 7.97 71.98 0.57 -1.11 16 6 C 0.54 9.93 6.53 87.66 0.57 10.51 16 7 O -0.57 -15.21 16.29 -3.03 -0.05 -15.26 16 8 N -0.61 -8.58 3.32 -811.78 -2.70 -11.28 16 9 C 0.11 1.31 6.89 86.86 0.60 1.91 16 10 C -0.14 -1.52 6.49 31.99 0.21 -1.32 16 11 C 0.13 1.72 3.97 46.18 0.18 1.90 16 12 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 13 N -0.28 -6.30 3.28 -321.53 -1.06 -7.36 16 14 C -0.02 -0.46 10.59 83.49 0.88 0.42 16 15 C -0.03 -1.13 6.62 41.60 0.28 -0.85 16 16 C 0.23 9.42 6.82 85.63 0.58 10.00 16 17 N -0.74 -38.02 5.59 -347.18 -1.94 -39.96 16 18 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 20 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 21 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 22 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 N -0.29 -11.29 12.41 -48.60 -0.60 -11.90 16 27 N -0.10 -3.19 13.16 37.02 0.49 -2.70 16 28 C 0.09 1.00 4.74 86.73 0.41 1.41 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.54 6.42 -2.39 -0.02 0.52 16 31 H 0.07 0.51 6.16 -2.39 -0.01 0.49 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.93 8.03 -2.39 -0.02 0.91 16 34 H 0.08 0.61 4.87 -2.39 -0.01 0.60 16 35 H 0.06 0.59 8.07 -2.39 -0.02 0.57 16 36 H 0.09 0.62 5.82 -2.39 -0.01 0.60 16 37 H 0.09 0.78 6.40 -2.39 -0.02 0.77 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.73 5.27 -2.39 -0.01 0.72 16 40 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.14 6.40 -2.39 -0.02 1.13 16 43 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.22 4.09 7.02 -2.91 -0.02 4.07 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.37 20.92 7.66 -92.71 -0.71 20.21 16 48 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 49 H 0.11 0.96 5.86 -2.39 -0.01 0.95 16 50 H 0.09 1.05 5.43 -2.39 -0.01 1.04 16 Total: -1.00 -77.38 388.50 3.62 -73.76 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.26 Total: 24.20 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 6.91 Total: 2.46 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -5.53 Total: -133.17 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.05 Total: -15.26 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -77.38 3.62 -73.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098710552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.568 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds