Wall clock time and date at job start Tue Mar 31 2020 18:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30834 * 125.96119 * 2 1 4 4 C 1.33240 * 109.82887 * 180.19446 * 3 2 1 5 5 C 1.50696 * 125.52607 * 179.85420 * 4 3 2 6 6 C 1.50693 * 109.47174 * 269.71856 * 5 4 3 7 7 O 1.21283 * 120.00203 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99731 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99830 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47050 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.70027 * 60.29639 * 10 9 8 12 12 C 1.53630 * 109.66293 * 180.88473 * 10 9 8 13 13 C 1.53044 * 109.23801 * 174.55188 * 12 10 9 14 14 C 1.53040 * 109.53976 * 298.50822 * 13 12 10 15 15 C 1.53001 * 109.49875 * 301.41844 * 14 13 12 16 16 C 1.52998 * 109.52389 * 181.33486 * 14 13 12 17 17 C 1.53197 * 109.30804 * 61.36769 * 14 13 12 18 18 N 1.46919 * 108.77783 * 305.36061 * 17 14 13 19 19 C 1.36936 * 120.63615 * 233.58810 * 18 17 14 20 20 H 1.08000 * 120.00139 * 148.91179 * 19 18 17 21 21 C 1.38817 * 119.99676 * 328.91079 * 19 18 17 22 22 N 1.31609 * 119.99890 * 162.73317 * 21 19 18 23 23 Si 1.86798 * 119.99940 * 342.46141 * 21 19 18 24 24 H 1.48500 * 109.47016 * 89.98194 * 23 21 19 25 25 H 1.48503 * 109.47041 * 209.97927 * 23 21 19 26 26 H 1.48502 * 109.47190 * 329.98226 * 23 21 19 27 27 N 1.30715 * 108.94331 * 359.59260 * 4 3 2 28 28 N 1.34430 * 125.96048 * 179.75318 * 2 1 3 29 29 H 0.97000 * 126.82358 * 359.93818 * 28 2 1 30 30 H 1.08998 * 109.46720 * 270.24429 * 1 2 3 31 31 H 1.08996 * 109.47073 * 30.24667 * 1 2 3 32 32 H 1.08998 * 109.46787 * 150.24781 * 1 2 3 33 33 H 1.09002 * 109.46875 * 149.71727 * 5 4 3 34 34 H 1.09002 * 109.47081 * 29.72474 * 5 4 3 35 35 H 0.96997 * 120.00657 * 0.02562 * 8 6 5 36 36 H 1.09005 * 109.46688 * 60.00390 * 9 8 6 37 37 H 1.08995 * 109.47125 * 300.00131 * 9 8 6 38 38 H 1.09001 * 109.63358 * 54.55788 * 12 10 9 39 39 H 1.09000 * 109.43243 * 294.41745 * 12 10 9 40 40 H 1.09005 * 109.45542 * 178.48733 * 13 12 10 41 41 H 1.08998 * 109.46106 * 58.53377 * 13 12 10 42 42 H 1.08992 * 109.47164 * 179.83462 * 15 14 13 43 43 H 1.09002 * 109.46872 * 299.83683 * 15 14 13 44 44 H 1.08999 * 109.47110 * 59.83574 * 15 14 13 45 45 H 1.09003 * 109.47334 * 300.14719 * 16 14 13 46 46 H 1.09002 * 109.47072 * 60.14481 * 16 14 13 47 47 H 1.09000 * 109.46815 * 180.14804 * 16 14 13 48 48 H 1.09003 * 109.57987 * 185.57749 * 17 14 13 49 49 H 1.08995 * 109.70082 * 65.22862 * 17 14 13 50 50 H 0.97004 * 120.00261 * 179.72684 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5553 0.6888 -0.0043 5 6 4.7372 1.6236 -0.0088 6 6 5.1307 1.9291 -1.4310 7 8 4.5125 1.4359 -2.3505 8 7 6.1702 2.7497 -1.6811 9 6 6.5530 3.0463 -3.0639 10 6 7.7529 3.9955 -3.0684 11 1 8.5942 3.5268 -2.5578 12 6 8.1443 4.3270 -4.5165 13 6 9.2547 5.3802 -4.5102 14 6 8.7427 6.6599 -3.8451 15 6 7.5176 7.1747 -4.6034 16 6 9.8422 7.7236 -3.8688 17 6 8.3558 6.3567 -2.3941 18 7 7.3951 5.2451 -2.3833 19 6 6.1915 5.3692 -1.7421 20 1 5.3259 4.8391 -2.1110 21 6 6.0841 6.1764 -0.6178 22 7 4.8995 6.5714 -0.2022 23 14 7.6203 6.6956 0.3094 24 1 8.1304 7.9718 -0.2530 25 1 7.2919 6.8838 1.7454 26 1 8.6600 5.6440 0.1731 27 7 3.6194 -0.6168 0.0018 28 7 2.2965 -1.0881 0.0047 29 1 2.0094 -2.0146 0.0095 30 1 -0.3633 0.0044 1.0277 31 1 -0.3633 0.8877 -0.5176 32 1 -0.3633 -0.8922 -0.5100 33 1 5.5745 1.1532 0.5068 34 1 4.4703 2.5492 0.5013 35 1 6.6653 3.1433 -0.9458 36 1 5.7159 3.5169 -3.5796 37 1 6.8197 2.1205 -3.5736 38 1 7.2772 4.7157 -5.0505 39 1 8.5022 3.4241 -5.0112 40 1 9.5539 5.5985 -5.5354 41 1 10.1124 5.0004 -3.9550 42 1 7.1516 8.0844 -4.1276 43 1 7.7935 7.3902 -5.6357 44 1 6.7351 6.4161 -4.5873 45 1 10.7151 7.3560 -3.3294 46 1 10.1172 7.9389 -4.9013 47 1 9.4775 8.6337 -3.3925 48 1 7.8987 7.2389 -1.9459 49 1 9.2441 6.0776 -1.8276 50 1 4.8241 7.1322 0.5857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099060398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:05 Heat of formation + Delta-G solvation = 40.291957 kcal Electronic energy + Delta-G solvation = -30380.023035 eV Core-core repulsion = 26443.442337 eV Total energy + Delta-G solvation = -3936.580698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.16846 -40.90810 -39.99866 -36.69805 -34.92964 -34.66514 -33.73531 -33.35756 -32.46843 -31.10258 -29.02095 -28.31003 -28.08173 -27.24618 -25.16288 -24.07992 -22.71470 -21.91196 -21.60779 -20.84755 -19.86721 -18.92959 -18.52012 -17.78359 -17.26358 -16.86384 -16.67110 -16.42341 -15.96175 -15.54812 -15.34094 -15.16574 -14.96567 -14.74468 -14.59317 -14.36746 -14.12551 -14.03805 -13.63525 -13.59762 -13.42409 -13.20358 -12.94676 -12.86678 -12.79236 -12.73693 -12.67898 -12.40144 -12.17310 -12.08060 -11.81159 -11.50598 -11.35296 -11.25739 -11.10892 -11.06777 -10.99321 -10.82236 -10.53157 -10.41950 -9.82748 -8.69313 -7.99961 -5.36409 0.55189 1.38282 1.47672 1.55802 1.65539 1.74416 1.77833 2.50829 2.53169 3.05676 3.15973 3.38451 3.53363 3.86586 3.90091 3.96171 4.02860 4.07866 4.26034 4.36119 4.37736 4.45233 4.47273 4.57516 4.70061 4.71762 4.75281 4.77179 4.86233 4.89089 4.97314 4.98983 5.04094 5.04754 5.10973 5.13522 5.20110 5.24801 5.29540 5.32715 5.45905 5.48820 5.55436 5.66865 5.76336 6.03457 6.24014 6.34735 6.71654 7.03860 7.09918 7.36413 7.75677 8.16976 9.18509 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.003291 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.896678 B = 8506.741038 C = 9396.239891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.284 3.716 3 N -0.576 5.576 4 C 0.243 3.757 5 C -0.048 4.048 6 C 0.521 3.479 7 O -0.593 6.593 8 N -0.689 5.689 9 C 0.142 3.858 10 C 0.164 3.836 11 H 0.055 0.945 12 C -0.127 4.127 13 C -0.091 4.091 14 C -0.084 4.084 15 C -0.122 4.122 16 C -0.135 4.135 17 C 0.134 3.866 18 N -0.610 5.610 19 C -0.222 4.222 20 H 0.058 0.942 21 C -0.022 4.022 22 N -0.954 5.954 23 Si 0.932 3.068 24 H -0.289 1.289 25 H -0.321 1.321 26 H -0.252 1.252 27 N -0.331 5.331 28 N -0.472 5.472 29 H 0.456 0.544 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.412 0.588 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.041 0.959 48 H 0.042 0.958 49 H 0.030 0.970 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -11.199 -2.608 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.006 3.994 3 N -0.306 5.306 4 C -0.040 4.040 5 C -0.090 4.090 6 C 0.306 3.694 7 O -0.475 6.475 8 N -0.339 5.339 9 C 0.018 3.982 10 C 0.059 3.941 11 H 0.073 0.927 12 C -0.166 4.166 13 C -0.128 4.128 14 C -0.086 4.086 15 C -0.179 4.179 16 C -0.193 4.193 17 C 0.009 3.991 18 N -0.335 5.335 19 C -0.351 4.351 20 H 0.075 0.925 21 C -0.217 4.217 22 N -0.601 5.601 23 Si 0.763 3.237 24 H -0.217 1.217 25 H -0.251 1.251 26 H -0.176 1.176 27 N -0.161 5.161 28 N -0.193 5.193 29 H 0.305 0.695 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.135 0.865 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.249 0.751 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.636 -11.515 -3.142 12.224 hybrid contribution -0.020 0.521 1.187 1.296 sum 2.616 -10.995 -1.955 11.469 Atomic orbital electron populations 1.20644 0.79910 1.06324 1.06239 1.25283 0.98392 0.81911 0.93823 1.70343 1.02064 1.31853 1.26378 1.23445 0.93099 0.90041 0.97457 1.19905 0.94426 0.99110 0.95531 1.20361 0.79854 0.78397 0.90750 1.90619 1.54478 1.54684 1.47717 1.45832 1.32182 1.45986 1.09853 1.21225 0.96736 0.97620 0.82667 1.21037 0.94131 0.85409 0.93568 0.92719 1.22040 0.99170 0.99681 0.95702 1.21409 0.97201 0.93401 1.00799 1.21017 0.95620 0.96359 0.95579 1.21661 0.97536 0.99611 0.99100 1.21789 0.97542 0.97441 1.02496 1.21460 0.91854 0.90239 0.95519 1.44463 1.16887 1.09932 1.62253 1.18694 0.86647 1.25460 1.04347 0.92483 1.25787 0.97433 0.99967 0.98551 1.69961 1.24456 1.38840 1.26807 0.86158 0.82228 0.78747 0.76569 1.21689 1.25056 1.17581 1.77792 0.98802 1.11842 1.27667 1.47801 1.03106 1.10829 1.57542 0.69483 0.86742 0.89007 0.86526 0.83989 0.86345 0.75066 0.94698 0.90772 0.92600 0.89742 0.90411 0.91492 0.95385 0.91771 0.93729 0.92066 0.90841 0.94018 0.93991 0.95232 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.51 71.24 0.75 -0.27 16 2 C 0.28 7.54 8.24 138.23 1.14 8.68 16 3 N -0.58 -21.49 11.19 -179.72 -2.01 -23.50 16 4 C 0.24 9.10 6.63 138.63 0.92 10.02 16 5 C -0.05 -1.70 6.33 29.10 0.18 -1.52 16 6 C 0.52 21.49 7.82 87.65 0.69 22.18 16 7 O -0.59 -28.55 16.03 -3.04 -0.05 -28.60 16 8 N -0.69 -26.69 3.84 -463.05 -1.78 -28.46 16 9 C 0.14 5.26 4.44 86.38 0.38 5.64 16 10 C 0.16 5.56 3.03 45.12 0.14 5.70 16 11 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 12 C -0.13 -3.55 5.05 30.82 0.16 -3.39 16 13 C -0.09 -2.30 4.71 30.62 0.14 -2.15 16 14 C -0.08 -2.59 0.77 -52.10 -0.04 -2.63 16 15 C -0.12 -4.05 7.99 71.98 0.57 -3.47 16 16 C -0.13 -3.44 8.48 71.98 0.61 -2.83 16 17 C 0.13 5.22 2.88 86.37 0.25 5.47 16 18 N -0.61 -25.35 2.15 -674.41 -1.45 -26.80 16 19 C -0.22 -11.27 7.40 84.03 0.62 -10.65 16 20 H 0.06 3.33 6.06 -2.91 -0.02 3.32 16 21 C -0.02 -1.22 5.26 84.86 0.45 -0.77 16 22 N -0.95 -57.84 13.97 21.65 0.30 -57.54 16 23 Si 0.93 43.94 24.33 68.60 1.67 45.61 16 24 H -0.29 -13.51 6.57 99.48 0.65 -12.85 16 25 H -0.32 -15.84 7.11 99.48 0.71 -15.13 16 26 H -0.25 -10.90 6.71 99.48 0.67 -10.23 16 27 N -0.33 -11.19 12.80 -51.34 -0.66 -11.85 16 28 N -0.47 -11.64 7.45 -50.70 -0.38 -12.02 16 29 H 0.46 6.73 8.96 -213.10 -1.91 4.82 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 34 H 0.12 4.41 8.14 -2.39 -0.02 4.39 16 35 H 0.41 15.71 7.38 -92.71 -0.68 15.02 16 36 H 0.03 1.53 7.43 -2.38 -0.02 1.51 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.06 1.75 6.33 -2.39 -0.02 1.73 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.04 1.70 5.97 -2.39 -0.01 1.69 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 47 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.04 1.90 4.71 -2.39 -0.01 1.88 16 49 H 0.03 1.12 7.02 -2.39 -0.02 1.11 16 50 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -79.18 385.99 0.89 -78.29 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -1.72 Total: 34.85 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 6.96 Total: 30.01 kcal Atomic # 7 Polarization: -154.20 SS G_CDS: -5.97 Total: -160.16 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.67 Total: 45.61 kcal Total: -79.18 0.89 -78.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099060398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.579 kcal (2) G-P(sol) polarization free energy of solvation -79.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds