Wall clock time and date at job start Tue Mar 31 2020 20:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47481 * 2 1 4 4 C 1.52999 * 109.47409 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46979 * 54.99597 * 4 3 2 6 6 C 1.53009 * 109.46795 * 294.99965 * 4 3 2 7 7 C 1.52996 * 109.47444 * 175.00233 * 4 3 2 8 8 C 1.50695 * 109.47121 * 184.99745 * 7 4 3 9 9 O 1.21279 * 120.00334 * 359.97438 * 8 7 4 10 10 N 1.34784 * 120.00127 * 179.97438 * 8 7 4 11 11 C 1.47576 * 134.49542 * 180.02562 * 10 8 7 12 12 C 1.53942 * 86.11852 * 155.35966 * 11 10 8 13 13 N 1.46491 * 113.74194 * 137.95195 * 12 11 10 14 14 C 1.35317 * 125.87029 * 277.21898 * 13 12 11 15 15 C 1.35352 * 106.17693 * 180.18381 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 C 1.47807 * 134.45239 * 359.87039 * 10 8 7 29 29 H 1.09002 * 109.47064 * 59.99555 * 1 2 3 30 30 H 1.08996 * 109.47605 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46609 * 300.00149 * 1 2 3 32 32 H 1.09004 * 109.46609 * 239.99850 * 2 1 3 33 33 H 1.09002 * 109.47064 * 120.00445 * 2 1 3 34 34 H 1.08999 * 109.47230 * 59.99845 * 3 2 1 35 35 H 1.09002 * 109.47335 * 300.00279 * 3 2 1 36 36 H 1.08995 * 109.47027 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.47212 * 300.00062 * 6 4 3 38 38 H 1.08999 * 109.46595 * 59.99822 * 6 4 3 39 39 H 1.08996 * 109.47120 * 64.99647 * 7 4 3 40 40 H 1.08998 * 109.46940 * 304.99776 * 7 4 3 41 41 H 1.09000 * 113.76645 * 41.05224 * 11 10 8 42 42 H 1.09007 * 113.76941 * 269.66440 * 11 10 8 43 43 H 1.09000 * 113.74068 * 269.15192 * 12 11 10 44 44 H 1.08002 * 126.91295 * 0.03783 * 14 13 12 45 45 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 46 46 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 47 47 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 48 48 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 49 49 H 1.09002 * 113.77031 * 90.37650 * 28 10 8 50 50 H 1.08999 * 113.84046 * 318.91260 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8426 6 6 4.0806 0.8325 1.3065 7 6 4.0801 2.8794 -0.1263 8 6 5.5819 2.8703 -0.2504 9 8 6.1851 1.8182 -0.2389 10 7 6.2550 4.0315 -0.3741 11 6 7.6793 4.3916 -0.5138 12 6 7.1791 5.6805 -1.1908 13 7 7.9035 6.8841 -0.7756 14 6 7.6630 7.6084 0.3419 15 6 8.5536 8.6276 0.3296 16 6 8.6909 9.7175 1.3612 17 7 9.7178 9.3408 2.3358 18 6 10.0224 10.1848 3.3703 19 1 9.5026 11.1262 3.4701 20 6 10.9994 9.8304 4.2905 21 7 11.2919 10.6414 5.2849 22 14 11.8991 8.2025 4.1172 23 1 13.1097 8.3927 3.2785 24 1 12.2996 7.7130 5.4608 25 1 11.0031 7.2076 3.4748 26 7 9.2916 8.4739 -0.7755 27 7 8.8813 7.4319 -1.4085 28 6 5.8617 5.4553 -0.4271 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 5.1705 0.8321 1.3059 37 1 3.7176 1.4218 2.1485 38 1 3.7172 -0.1912 1.3960 39 1 3.7921 3.4458 0.7592 40 1 3.6452 3.3431 -1.0116 41 1 8.2357 3.7326 -1.1803 42 1 8.1846 4.5622 0.4369 43 1 7.0785 5.5972 -2.2729 44 1 6.9102 7.4138 1.0914 45 1 7.7382 9.8561 1.8724 46 1 8.9789 10.6475 0.8711 47 1 10.1849 8.4954 2.2459 48 1 11.9744 10.3936 5.9282 49 1 5.8315 5.9394 0.5491 50 1 4.9699 5.6441 -1.0246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105185202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:36 Heat of formation + Delta-G solvation = 103.196712 kcal Electronic energy + Delta-G solvation = -28154.579292 eV Core-core repulsion = 24220.726349 eV Total energy + Delta-G solvation = -3933.852943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -43.29402 -40.89963 -38.92237 -36.99007 -35.24158 -33.67089 -33.16061 -31.95779 -30.40816 -30.23363 -27.94644 -27.10746 -26.94177 -26.17214 -24.15649 -22.49167 -22.39705 -21.23737 -20.82675 -20.47984 -19.41633 -18.26308 -17.69400 -17.36113 -16.67709 -16.22194 -15.85753 -15.58493 -15.14442 -14.68112 -14.58660 -14.43720 -14.15273 -14.00499 -13.88391 -13.56038 -13.43598 -13.13286 -13.01177 -12.74161 -12.73190 -12.42932 -12.27075 -12.09221 -11.99247 -11.89079 -11.62061 -11.41506 -11.22484 -11.14427 -11.06260 -10.89590 -10.88389 -10.66281 -10.20337 -10.16625 -10.01606 -9.60774 -9.39445 -9.10143 -8.91851 -7.25627 -5.77392 -3.13397 1.53952 1.78398 2.05900 2.50842 2.68164 3.34899 3.38399 3.43538 3.47171 3.61077 4.06685 4.15243 4.19924 4.37499 4.48832 4.52393 4.59942 4.61196 4.66097 4.70128 4.76960 4.91745 4.97148 5.02453 5.04872 5.10089 5.18220 5.20410 5.23237 5.30140 5.34760 5.39350 5.45204 5.51434 5.59983 5.63045 5.68276 5.69822 5.73683 5.83078 5.97303 6.08840 6.18462 6.50454 6.51721 6.62840 6.99880 7.61870 7.96711 8.41105 8.61293 9.19027 9.91611 10.11162 11.40593 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.002053 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.501672 B =13634.886731 C =14398.710932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.077 4.077 5 H 0.078 0.922 6 C -0.156 4.156 7 C -0.131 4.131 8 C 0.543 3.457 9 O -0.525 6.525 10 N -0.647 5.647 11 C 0.103 3.897 12 C 0.112 3.888 13 N -0.295 5.295 14 C -0.046 4.046 15 C -0.007 4.007 16 C 0.237 3.763 17 N -0.750 5.750 18 C -0.245 4.245 19 H 0.094 0.906 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.280 1.280 26 N -0.251 5.251 27 N -0.089 5.089 28 C 0.099 3.901 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.146 0.854 44 H 0.190 0.810 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.362 0.638 48 H 0.260 0.740 49 H 0.104 0.896 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.462 -19.637 -14.387 33.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.096 4.096 5 H 0.097 0.903 6 C -0.213 4.213 7 C -0.171 4.171 8 C 0.334 3.666 9 O -0.400 6.400 10 N -0.385 5.385 11 C -0.021 4.021 12 C 0.008 3.992 13 N -0.089 5.089 14 C -0.195 4.195 15 C -0.144 4.144 16 C 0.108 3.892 17 N -0.396 5.396 18 C -0.375 4.375 19 H 0.111 0.889 20 C -0.188 4.188 21 N -0.580 5.580 22 Si 0.714 3.286 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.207 1.207 26 N -0.118 5.118 27 N -0.067 5.067 28 C -0.025 4.025 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.164 0.836 44 H 0.207 0.793 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.195 0.805 48 H 0.070 0.930 49 H 0.122 0.878 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.356 -20.299 -15.452 33.920 hybrid contribution 0.019 -1.112 0.942 1.458 sum -22.337 -21.410 -14.509 34.174 Atomic orbital electron populations 1.21783 0.95910 1.01612 1.01758 1.21573 0.95700 0.96791 1.02332 1.21678 0.94291 0.97219 1.02097 1.20939 0.94800 0.93799 1.00035 0.90319 1.22012 1.02925 1.00526 0.95852 1.21755 0.90709 1.00199 1.04447 1.20480 0.89969 0.81305 0.74851 1.90719 1.70436 1.29592 1.49283 1.49797 1.08759 1.05447 1.74460 1.23591 0.84691 0.92373 1.01418 1.23712 0.91951 0.81170 1.02326 1.47155 1.24379 1.20739 1.16656 1.23369 1.06411 0.95990 0.93774 1.22560 0.95131 0.99674 0.97068 1.18932 0.93465 0.91061 0.85710 1.42653 1.44805 1.22111 1.30007 1.19035 1.16987 1.00457 1.00972 0.88851 1.24625 0.99008 0.97844 0.97313 1.69692 1.35221 1.36719 1.16319 0.86565 0.80350 0.84826 0.76831 1.20928 1.21707 1.20656 1.75144 1.21706 1.09052 1.05939 1.78324 1.01831 1.05906 1.20658 1.23687 0.97064 0.80344 1.01363 0.92825 0.92816 0.92748 0.92034 0.91626 0.91770 0.91940 0.90917 0.93210 0.92487 0.88608 0.88736 0.88079 0.88453 0.83616 0.79268 0.93551 0.93359 0.80504 0.93004 0.87809 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.13 -0.64 5.69 -26.73 -0.15 -0.80 16 3 C -0.12 -0.56 4.68 -26.73 -0.13 -0.68 16 4 C -0.08 -0.49 2.04 -90.62 -0.18 -0.67 16 5 H 0.08 0.60 7.95 -51.93 -0.41 0.19 16 6 C -0.16 -1.19 8.69 37.16 0.32 -0.86 16 7 C -0.13 -0.72 4.92 -27.89 -0.14 -0.86 16 8 C 0.54 4.76 7.77 -10.98 -0.09 4.68 16 9 O -0.53 -6.64 14.69 5.56 0.08 -6.56 16 10 N -0.65 -4.73 3.61 -178.36 -0.64 -5.38 16 11 C 0.10 0.84 8.64 -2.97 -0.03 0.82 16 12 C 0.11 0.80 5.13 -70.16 -0.36 0.44 16 13 N -0.29 -3.41 3.54 -56.32 -0.20 -3.61 16 14 C -0.05 -0.57 10.72 -17.04 -0.18 -0.75 16 15 C -0.01 -0.11 6.61 -82.78 -0.55 -0.66 16 16 C 0.24 4.55 6.82 -5.19 -0.04 4.51 16 17 N -0.75 -17.99 5.40 -61.09 -0.33 -18.31 16 18 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 19 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 22 Si 0.88 22.61 27.74 -169.99 -4.71 17.89 16 23 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 26 N -0.25 -4.61 12.41 33.29 0.41 -4.19 16 27 N -0.09 -1.38 13.17 60.35 0.79 -0.59 16 28 C 0.10 0.47 8.00 -2.85 -0.02 0.44 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.36 6.57 -51.93 -0.34 0.01 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.74 5.95 -51.93 -0.31 0.43 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.15 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.19 1.66 6.74 -52.49 -0.35 1.31 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.36 8.80 5.52 -40.82 -0.23 8.58 16 48 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 49 H 0.10 0.44 6.31 -51.93 -0.33 0.11 16 50 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 404.97 15.07 6.10 6.10 Total: -1.00 -36.37 404.97 -7.39 -43.75 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.24 Total: 0.93 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.42 Total: -1.63 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.81 Total: -60.49 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: 0.08 Total: -6.56 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.37 -7.39 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105185202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.950 kcal (2) G-P(sol) polarization free energy of solvation -36.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds