Wall clock time and date at job start Tue Mar 31 2020 20:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47481 * 2 1 4 4 C 1.52999 * 109.47409 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46979 * 54.99597 * 4 3 2 6 6 C 1.53009 * 109.46795 * 294.99965 * 4 3 2 7 7 C 1.52996 * 109.47444 * 175.00233 * 4 3 2 8 8 C 1.50695 * 109.47121 * 184.99745 * 7 4 3 9 9 O 1.21279 * 120.00334 * 359.97438 * 8 7 4 10 10 N 1.34784 * 120.00127 * 179.97438 * 8 7 4 11 11 C 1.47576 * 134.49542 * 180.02562 * 10 8 7 12 12 C 1.53942 * 86.11852 * 155.35966 * 11 10 8 13 13 N 1.46491 * 113.74194 * 137.95195 * 12 11 10 14 14 C 1.35317 * 125.87029 * 277.21898 * 13 12 11 15 15 C 1.35352 * 106.17693 * 180.18381 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 C 1.47807 * 134.45239 * 359.87039 * 10 8 7 29 29 H 1.09002 * 109.47064 * 59.99555 * 1 2 3 30 30 H 1.08996 * 109.47605 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46609 * 300.00149 * 1 2 3 32 32 H 1.09004 * 109.46609 * 239.99850 * 2 1 3 33 33 H 1.09002 * 109.47064 * 120.00445 * 2 1 3 34 34 H 1.08999 * 109.47230 * 59.99845 * 3 2 1 35 35 H 1.09002 * 109.47335 * 300.00279 * 3 2 1 36 36 H 1.08995 * 109.47027 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.47212 * 300.00062 * 6 4 3 38 38 H 1.08999 * 109.46595 * 59.99822 * 6 4 3 39 39 H 1.08996 * 109.47120 * 64.99647 * 7 4 3 40 40 H 1.08998 * 109.46940 * 304.99776 * 7 4 3 41 41 H 1.09000 * 113.76645 * 41.05224 * 11 10 8 42 42 H 1.09007 * 113.76941 * 269.66440 * 11 10 8 43 43 H 1.09000 * 113.74068 * 269.15192 * 12 11 10 44 44 H 1.08002 * 126.91295 * 0.03783 * 14 13 12 45 45 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 46 46 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 47 47 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 48 48 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 49 49 H 1.09002 * 113.77031 * 90.37650 * 28 10 8 50 50 H 1.08999 * 113.84046 * 318.91260 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8426 6 6 4.0806 0.8325 1.3065 7 6 4.0801 2.8794 -0.1263 8 6 5.5819 2.8703 -0.2504 9 8 6.1851 1.8182 -0.2389 10 7 6.2550 4.0315 -0.3741 11 6 7.6793 4.3916 -0.5138 12 6 7.1791 5.6805 -1.1908 13 7 7.9035 6.8841 -0.7756 14 6 7.6630 7.6084 0.3419 15 6 8.5536 8.6276 0.3296 16 6 8.6909 9.7175 1.3612 17 7 9.7178 9.3408 2.3358 18 6 10.0224 10.1848 3.3703 19 1 9.5026 11.1262 3.4701 20 6 10.9994 9.8304 4.2905 21 7 11.2919 10.6414 5.2849 22 14 11.8991 8.2025 4.1172 23 1 13.1097 8.3927 3.2785 24 1 12.2996 7.7130 5.4608 25 1 11.0031 7.2076 3.4748 26 7 9.2916 8.4739 -0.7755 27 7 8.8813 7.4319 -1.4085 28 6 5.8617 5.4553 -0.4271 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 5.1705 0.8321 1.3059 37 1 3.7176 1.4218 2.1485 38 1 3.7172 -0.1912 1.3960 39 1 3.7921 3.4458 0.7592 40 1 3.6452 3.3431 -1.0116 41 1 8.2357 3.7326 -1.1803 42 1 8.1846 4.5622 0.4369 43 1 7.0785 5.5972 -2.2729 44 1 6.9102 7.4138 1.0914 45 1 7.7382 9.8561 1.8724 46 1 8.9789 10.6475 0.8711 47 1 10.1849 8.4954 2.2459 48 1 11.9744 10.3936 5.9282 49 1 5.8315 5.9394 0.5491 50 1 4.9699 5.6441 -1.0246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105185202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:34 Heat of formation + Delta-G solvation = 77.953304 kcal Electronic energy + Delta-G solvation = -28155.673928 eV Core-core repulsion = 24220.726349 eV Total energy + Delta-G solvation = -3934.947580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.35524 -41.52192 -39.54643 -37.50477 -36.97180 -34.81019 -33.74836 -33.58195 -31.98674 -30.92278 -28.49340 -28.05503 -27.51926 -27.21364 -25.00133 -24.34382 -22.90838 -22.37769 -21.77052 -20.94876 -20.00204 -19.88834 -18.71282 -18.13322 -17.49255 -16.98756 -16.56165 -16.47317 -16.13307 -16.11632 -15.74203 -15.32185 -15.00480 -14.92144 -14.63979 -14.38743 -14.36595 -14.07957 -13.95586 -13.87126 -13.71888 -13.25834 -13.15781 -12.92051 -12.84923 -12.70552 -12.58967 -12.49742 -12.36185 -12.13193 -11.87710 -11.82993 -11.81704 -11.68997 -11.50218 -11.27658 -11.10406 -11.01649 -10.78010 -10.26803 -9.98000 -9.30735 -8.02194 -5.34951 0.53423 1.06082 1.33948 1.39295 1.41639 1.45932 1.46716 1.86255 2.47007 2.77754 3.05998 3.29115 3.40089 3.60215 3.67787 3.77011 3.83495 3.94179 3.95816 4.06052 4.15434 4.22728 4.28467 4.33636 4.37789 4.42710 4.50309 4.51857 4.64308 4.65502 4.71298 4.74539 4.79924 4.86400 4.93116 4.97997 5.06557 5.11708 5.16600 5.17568 5.25896 5.30839 5.42092 5.54000 5.56792 5.61313 5.76879 6.21483 6.44206 7.01434 7.06580 7.48084 7.81980 8.00688 9.18880 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.002053 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.501672 B =13634.886731 C =14398.710932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.075 4.075 5 H 0.059 0.941 6 C -0.154 4.154 7 C -0.124 4.124 8 C 0.537 3.463 9 O -0.575 6.575 10 N -0.645 5.645 11 C 0.094 3.906 12 C 0.109 3.891 13 N -0.277 5.277 14 C -0.013 4.013 15 C -0.040 4.040 16 C 0.238 3.762 17 N -0.753 5.753 18 C -0.228 4.228 19 H 0.070 0.930 20 C -0.057 4.057 21 N -0.979 5.979 22 Si 0.947 3.053 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.259 1.259 26 N -0.295 5.295 27 N -0.107 5.107 28 C 0.111 3.889 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.166 0.834 44 H 0.233 0.767 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.362 0.638 48 H 0.258 0.742 49 H 0.118 0.882 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.487 -20.722 -15.449 37.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.145 4.145 4 C -0.094 4.094 5 H 0.078 0.922 6 C -0.211 4.211 7 C -0.163 4.163 8 C 0.330 3.670 9 O -0.454 6.454 10 N -0.382 5.382 11 C -0.030 4.030 12 C 0.007 3.993 13 N -0.072 5.072 14 C -0.165 4.165 15 C -0.179 4.179 16 C 0.111 3.889 17 N -0.399 5.399 18 C -0.359 4.359 19 H 0.088 0.912 20 C -0.249 4.249 21 N -0.629 5.629 22 Si 0.776 3.224 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.184 1.184 26 N -0.162 5.162 27 N -0.085 5.085 28 C -0.012 4.012 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.183 0.817 44 H 0.250 0.750 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.194 0.806 48 H 0.067 0.933 49 H 0.136 0.864 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -25.425 -21.385 -16.582 37.132 hybrid contribution 0.879 -0.798 1.200 1.688 sum -24.547 -22.184 -15.382 36.487 Atomic orbital electron populations 1.21772 0.95332 1.01716 1.02114 1.21589 0.96199 0.97174 1.01739 1.21621 0.92799 0.97006 1.03089 1.20895 0.95877 0.94303 0.98332 0.92215 1.21970 1.00961 1.00979 0.97197 1.21807 0.88027 0.99818 1.06677 1.21145 0.91259 0.80807 0.73836 1.90709 1.71587 1.31510 1.51566 1.49820 1.08278 1.06461 1.73623 1.23557 0.85580 0.93055 1.00850 1.24149 0.92746 0.78636 1.03779 1.47451 1.23055 1.20918 1.15748 1.23820 1.05146 0.93742 0.93762 1.22264 0.97469 1.01072 0.97051 1.18952 0.92884 0.91600 0.85515 1.42701 1.45923 1.21381 1.29915 1.19067 1.15626 0.99861 1.01377 0.91230 1.25342 1.00561 1.01431 0.97518 1.69846 1.36488 1.38925 1.17686 0.85533 0.79032 0.81301 0.76576 1.21486 1.21831 1.18352 1.75081 1.23364 1.10665 1.07118 1.78233 1.03255 1.05798 1.21227 1.23948 0.96871 0.78066 1.02282 0.92322 0.92933 0.92474 0.92617 0.92358 0.90976 0.90590 0.93836 0.92349 0.92606 0.86604 0.85782 0.88762 0.89769 0.81692 0.75030 0.91007 0.94791 0.80610 0.93317 0.86428 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.13 -1.13 5.69 30.59 0.17 -0.96 16 3 C -0.11 -0.74 4.68 30.59 0.14 -0.60 16 4 C -0.08 -0.81 2.04 -10.79 -0.02 -0.83 16 5 H 0.06 0.88 7.95 -2.39 -0.02 0.86 16 6 C -0.15 -2.24 8.69 71.99 0.63 -1.61 16 7 C -0.12 -0.91 4.92 29.85 0.15 -0.77 16 8 C 0.54 8.24 7.77 87.65 0.68 8.92 16 9 O -0.57 -14.47 14.69 -3.03 -0.04 -14.51 16 10 N -0.65 -7.36 3.61 -836.59 -3.02 -10.38 16 11 C 0.09 1.34 8.64 86.49 0.75 2.09 16 12 C 0.11 1.14 5.13 46.74 0.24 1.38 16 13 N -0.28 -5.53 3.54 -332.09 -1.18 -6.71 16 14 C -0.01 -0.28 10.72 83.49 0.89 0.61 16 15 C -0.04 -1.28 6.61 41.60 0.28 -1.00 16 16 C 0.24 8.82 6.82 85.63 0.58 9.41 16 17 N -0.75 -35.40 5.40 -347.18 -1.87 -37.27 16 18 C -0.23 -12.90 10.47 84.03 0.88 -12.02 16 19 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 20 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 21 N -0.98 -62.46 13.97 21.65 0.30 -62.15 16 22 Si 0.95 46.77 27.74 68.60 1.90 48.68 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.26 -11.68 6.52 99.48 0.65 -11.03 16 26 N -0.30 -10.57 12.41 -48.60 -0.60 -11.17 16 27 N -0.11 -3.15 13.17 37.02 0.49 -2.66 16 28 C 0.11 0.45 8.00 86.44 0.69 1.14 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.06 0.58 6.57 -2.39 -0.02 0.57 16 34 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.04 0.90 5.95 -2.39 -0.01 0.89 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.78 6.56 -2.39 -0.02 0.77 16 39 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.17 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.23 2.70 6.74 -2.91 -0.02 2.68 16 45 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 46 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.36 16.99 5.52 -92.71 -0.51 16.47 16 48 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 49 H 0.12 0.24 6.31 -2.39 -0.02 0.22 16 50 H 0.15 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: -1.00 -83.18 404.97 3.58 -79.60 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.37 Total: 14.10 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 7.24 Total: 2.49 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -5.89 Total: -130.35 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.04 Total: -14.51 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.90 Total: 48.68 kcal Total: -83.18 3.58 -79.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105185202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.549 kcal (2) G-P(sol) polarization free energy of solvation -83.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds