Wall clock time and date at job start Tue Mar 31 2020 20:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46898 * 2 1 4 4 C 1.53001 * 109.46898 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47259 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47399 * 305.00322 * 5 4 3 7 7 C 1.53002 * 109.47050 * 65.00034 * 5 4 3 8 8 C 1.50699 * 109.47432 * 184.99921 * 5 4 3 9 9 O 1.21285 * 119.99717 * 0.02562 * 8 5 4 10 10 N 1.34777 * 120.00128 * 179.97438 * 8 5 4 11 11 C 1.47587 * 134.49194 * 180.02562 * 10 8 5 12 12 C 1.53947 * 86.11492 * 155.35831 * 11 10 8 13 13 N 1.46494 * 113.73833 * 137.94973 * 12 11 10 14 14 C 1.35317 * 125.87155 * 275.32706 * 13 12 11 15 15 C 1.35352 * 106.17693 * 180.11507 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 C 1.47585 * 134.49454 * 0.02562 * 10 8 5 29 29 H 1.08999 * 109.47269 * 299.99666 * 1 2 3 30 30 H 1.08995 * 109.47157 * 59.99906 * 1 2 3 31 31 H 1.09007 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46553 * 240.00141 * 2 1 3 33 33 H 1.08995 * 109.47157 * 120.00094 * 2 1 3 34 34 H 1.09001 * 109.47404 * 60.00662 * 3 2 1 35 35 H 1.09004 * 109.47892 * 300.00009 * 3 2 1 36 36 H 1.08999 * 109.47269 * 60.00334 * 4 3 2 37 37 H 1.08995 * 109.47157 * 300.00094 * 4 3 2 38 38 H 1.08996 * 109.47067 * 60.00471 * 7 5 4 39 39 H 1.08998 * 109.47053 * 180.02562 * 7 5 4 40 40 H 1.08998 * 109.47021 * 300.00229 * 7 5 4 41 41 H 1.09000 * 113.76791 * 41.06228 * 11 10 8 42 42 H 1.08999 * 113.76608 * 269.66150 * 11 10 8 43 43 H 1.08997 * 113.74241 * 269.15464 * 12 11 10 44 44 H 1.08002 * 126.91295 * 359.96910 * 14 13 12 45 45 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 46 46 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 47 47 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 48 48 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 49 49 H 1.08992 * 113.76674 * 90.33680 * 28 10 8 50 50 H 1.09002 * 113.76315 * 318.94269 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6457 3.4243 -0.8405 7 6 3.6747 3.5686 1.3087 8 6 5.5819 2.8868 -0.1219 9 8 6.1850 1.8377 -0.2027 10 7 6.2549 4.0544 -0.1432 11 6 7.6794 4.4253 -0.2498 12 6 7.1795 5.7684 -0.8122 13 7 7.9035 6.9312 -0.2929 14 6 7.6388 7.5772 0.8663 15 6 8.5400 8.5835 0.9515 16 6 8.6593 9.5955 2.0617 17 7 9.6540 9.1377 3.0350 18 6 9.9379 9.9022 4.1351 19 1 9.4252 10.8405 4.2875 20 6 10.8845 9.4712 5.0543 21 7 11.5095 8.3279 4.8683 22 14 11.2712 10.5137 6.5553 23 1 10.3728 10.1257 7.6723 24 1 12.6839 10.2966 6.9581 25 1 11.0643 11.9475 6.2288 26 7 9.3076 8.4995 -0.1408 27 7 8.9047 7.5104 -0.8578 28 6 5.8633 5.4754 -0.0694 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9329 0.9287 0.8908 38 1 4.1090 3.0293 2.1505 39 1 4.0376 4.5964 1.3090 40 1 2.5883 3.5672 1.3978 41 1 8.2363 3.8271 -0.9710 42 1 8.1838 4.5124 0.7125 43 1 7.0797 5.7798 -1.8975 44 1 6.8629 7.3393 1.5790 45 1 7.6939 9.7094 2.5550 46 1 8.9709 10.5543 1.6474 47 1 10.1146 8.2951 2.8980 48 1 12.1707 8.0265 5.5108 49 1 5.8343 5.8709 0.9458 50 1 4.9703 5.7155 -0.6465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105225338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:08 Heat of formation + Delta-G solvation = 97.923528 kcal Electronic energy + Delta-G solvation = -28204.087619 eV Core-core repulsion = 24270.006013 eV Total energy + Delta-G solvation = -3934.081606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.15110 -40.90090 -38.72227 -36.68908 -35.02339 -33.97216 -33.41414 -31.86560 -30.02014 -29.86491 -28.65934 -26.98095 -25.96178 -25.65888 -24.16821 -22.84759 -22.39836 -21.31990 -20.94959 -20.53467 -19.34143 -17.91148 -17.57514 -17.06528 -16.52612 -16.18844 -16.00715 -15.40065 -14.97664 -14.66285 -14.46659 -14.28917 -13.97521 -13.92048 -13.66518 -13.56988 -13.34167 -13.23630 -13.07314 -12.78170 -12.65330 -12.62214 -12.18292 -12.08931 -11.77500 -11.73412 -11.41622 -11.38226 -11.30802 -11.11021 -10.91652 -10.89404 -10.81718 -10.54516 -10.14039 -10.08917 -9.93098 -9.74856 -9.31130 -8.93124 -8.88170 -6.93277 -5.74974 -3.04919 1.68187 1.89613 2.13051 2.61905 2.84479 3.43287 3.44957 3.50319 3.52456 3.66622 4.12315 4.20471 4.25052 4.41240 4.59366 4.61316 4.62441 4.64436 4.68606 4.72448 4.77903 4.84436 5.00815 5.08716 5.14956 5.17858 5.20744 5.23735 5.31491 5.34656 5.40930 5.43535 5.48625 5.53107 5.60201 5.63716 5.69192 5.75291 5.79747 5.90382 5.97867 6.15077 6.34451 6.60851 6.65477 6.74470 7.08011 7.67896 7.70139 8.42094 8.76255 9.53983 10.09229 10.44898 11.47656 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.001986 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.588515 B =14092.079361 C =15091.781854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.102 4.102 5 C -0.104 4.104 6 H 0.098 0.902 7 C -0.149 4.149 8 C 0.547 3.453 9 O -0.529 6.529 10 N -0.643 5.643 11 C 0.103 3.897 12 C 0.113 3.887 13 N -0.295 5.295 14 C -0.046 4.046 15 C 0.000 4.000 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 N -0.250 5.250 27 N -0.090 5.090 28 C 0.100 3.900 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.145 0.855 44 H 0.188 0.812 45 H 0.038 0.962 46 H 0.040 0.960 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.104 0.896 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.031 -13.456 -13.075 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.140 4.140 5 C -0.125 4.125 6 H 0.116 0.884 7 C -0.206 4.206 8 C 0.337 3.663 9 O -0.404 6.404 10 N -0.381 5.381 11 C -0.021 4.021 12 C 0.009 3.991 13 N -0.089 5.089 14 C -0.196 4.196 15 C -0.138 4.138 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.206 1.206 26 N -0.118 5.118 27 N -0.069 5.069 28 C -0.024 4.024 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.163 0.837 44 H 0.205 0.795 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.122 0.878 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.873 -14.107 -14.227 30.407 hybrid contribution -0.253 0.150 1.728 1.752 sum -23.125 -13.957 -12.499 29.763 Atomic orbital electron populations 1.21779 0.95873 1.01624 1.01764 1.21522 0.95780 0.96797 1.02243 1.21687 0.94805 0.97107 1.02225 1.21453 0.95043 0.93779 1.03734 1.21306 0.90630 0.99721 1.00842 0.88410 1.21887 1.02617 1.00427 0.95712 1.20454 0.89755 0.81218 0.74870 1.90744 1.70377 1.30082 1.49193 1.49682 1.08814 1.05295 1.74282 1.23616 0.84533 0.91281 1.02625 1.23693 0.91947 0.82159 1.01329 1.47116 1.23269 1.22811 1.15753 1.23309 1.06287 0.97821 0.92209 1.22497 0.94345 0.99664 0.97261 1.18965 0.94049 0.91770 0.84947 1.42305 1.46090 1.25193 1.23473 1.19227 1.17772 1.01787 0.98422 0.90859 1.24763 0.99266 0.97502 0.99336 1.69682 1.29592 1.21332 1.37354 0.86157 0.77326 0.79567 0.82919 1.21754 1.21791 1.20649 1.75131 1.21784 1.10802 1.04046 1.78309 1.01228 1.05670 1.21658 1.23661 0.97036 0.79862 1.01891 0.92741 0.92802 0.92809 0.91986 0.91920 0.91563 0.91948 0.91021 0.91116 0.91818 0.92031 0.90833 0.88096 0.88242 0.83738 0.79477 0.94429 0.94251 0.78108 0.93495 0.87804 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.13 -0.67 5.93 -26.73 -0.16 -0.83 16 3 C -0.12 -0.62 4.97 -26.73 -0.13 -0.75 16 4 C -0.10 -0.70 4.03 -26.73 -0.11 -0.81 16 5 C -0.10 -0.67 2.55 -91.77 -0.23 -0.90 16 6 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 7 C -0.15 -0.80 8.83 37.16 0.33 -0.47 16 8 C 0.55 5.39 7.38 -10.99 -0.08 5.30 16 9 O -0.53 -7.44 16.65 5.55 0.09 -7.35 16 10 N -0.64 -5.32 3.57 -178.53 -0.64 -5.96 16 11 C 0.10 0.95 8.64 -2.97 -0.03 0.92 16 12 C 0.11 0.90 5.15 -70.14 -0.36 0.54 16 13 N -0.29 -3.70 3.54 -56.30 -0.20 -3.90 16 14 C -0.05 -0.63 10.72 -17.04 -0.18 -0.81 16 15 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 16 C 0.23 4.69 6.82 -5.19 -0.04 4.66 16 17 N -0.73 -18.61 5.59 -61.09 -0.34 -18.95 16 18 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 27 N -0.09 -1.50 13.17 60.35 0.79 -0.71 16 28 C 0.10 0.56 6.24 -2.97 -0.02 0.54 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.24 8.14 -51.92 -0.42 -0.18 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.31 6.56 -51.93 -0.34 -0.03 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.58 7.95 -51.93 -0.41 0.16 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.28 6.14 -51.93 -0.32 -0.04 16 40 H 0.07 0.30 6.56 -51.93 -0.34 -0.04 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.15 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.19 1.86 6.72 -52.49 -0.35 1.50 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.39 10.70 7.66 -40.82 -0.31 10.39 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.10 0.54 6.13 -51.93 -0.32 0.22 16 50 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 408.14 15.07 6.15 6.15 Total: -1.00 -36.10 408.14 -7.75 -43.85 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.28 Total: 2.64 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.44 Total: -0.84 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.75 Total: -61.79 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.09 Total: -7.35 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.10 -7.75 -43.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105225338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.775 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds