Wall clock time and date at job start Tue Mar 31 2020 20:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46898 * 2 1 4 4 C 1.53001 * 109.46898 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47259 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47399 * 305.00322 * 5 4 3 7 7 C 1.53002 * 109.47050 * 65.00034 * 5 4 3 8 8 C 1.50699 * 109.47432 * 184.99921 * 5 4 3 9 9 O 1.21285 * 119.99717 * 0.02562 * 8 5 4 10 10 N 1.34777 * 120.00128 * 179.97438 * 8 5 4 11 11 C 1.47587 * 134.49194 * 180.02562 * 10 8 5 12 12 C 1.53947 * 86.11492 * 155.35831 * 11 10 8 13 13 N 1.46494 * 113.73833 * 137.94973 * 12 11 10 14 14 C 1.35317 * 125.87155 * 275.32706 * 13 12 11 15 15 C 1.35352 * 106.17693 * 180.11507 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 C 1.47585 * 134.49454 * 0.02562 * 10 8 5 29 29 H 1.08999 * 109.47269 * 299.99666 * 1 2 3 30 30 H 1.08995 * 109.47157 * 59.99906 * 1 2 3 31 31 H 1.09007 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46553 * 240.00141 * 2 1 3 33 33 H 1.08995 * 109.47157 * 120.00094 * 2 1 3 34 34 H 1.09001 * 109.47404 * 60.00662 * 3 2 1 35 35 H 1.09004 * 109.47892 * 300.00009 * 3 2 1 36 36 H 1.08999 * 109.47269 * 60.00334 * 4 3 2 37 37 H 1.08995 * 109.47157 * 300.00094 * 4 3 2 38 38 H 1.08996 * 109.47067 * 60.00471 * 7 5 4 39 39 H 1.08998 * 109.47053 * 180.02562 * 7 5 4 40 40 H 1.08998 * 109.47021 * 300.00229 * 7 5 4 41 41 H 1.09000 * 113.76791 * 41.06228 * 11 10 8 42 42 H 1.08999 * 113.76608 * 269.66150 * 11 10 8 43 43 H 1.08997 * 113.74241 * 269.15464 * 12 11 10 44 44 H 1.08002 * 126.91295 * 359.96910 * 14 13 12 45 45 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 46 46 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 47 47 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 48 48 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 49 49 H 1.08992 * 113.76674 * 90.33680 * 28 10 8 50 50 H 1.09002 * 113.76315 * 318.94269 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6457 3.4243 -0.8405 7 6 3.6747 3.5686 1.3087 8 6 5.5819 2.8868 -0.1219 9 8 6.1850 1.8377 -0.2027 10 7 6.2549 4.0544 -0.1432 11 6 7.6794 4.4253 -0.2498 12 6 7.1795 5.7684 -0.8122 13 7 7.9035 6.9312 -0.2929 14 6 7.6388 7.5772 0.8663 15 6 8.5400 8.5835 0.9515 16 6 8.6593 9.5955 2.0617 17 7 9.6540 9.1377 3.0350 18 6 9.9379 9.9022 4.1351 19 1 9.4252 10.8405 4.2875 20 6 10.8845 9.4712 5.0543 21 7 11.5095 8.3279 4.8683 22 14 11.2712 10.5137 6.5553 23 1 10.3728 10.1257 7.6723 24 1 12.6839 10.2966 6.9581 25 1 11.0643 11.9475 6.2288 26 7 9.3076 8.4995 -0.1408 27 7 8.9047 7.5104 -0.8578 28 6 5.8633 5.4754 -0.0694 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9329 0.9287 0.8908 38 1 4.1090 3.0293 2.1505 39 1 4.0376 4.5964 1.3090 40 1 2.5883 3.5672 1.3978 41 1 8.2363 3.8271 -0.9710 42 1 8.1838 4.5124 0.7125 43 1 7.0797 5.7798 -1.8975 44 1 6.8629 7.3393 1.5790 45 1 7.6939 9.7094 2.5550 46 1 8.9709 10.5543 1.6474 47 1 10.1146 8.2951 2.8980 48 1 12.1707 8.0265 5.5108 49 1 5.8343 5.8709 0.9458 50 1 4.9703 5.7155 -0.6465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105225338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:07 Heat of formation + Delta-G solvation = 72.958259 kcal Electronic energy + Delta-G solvation = -28205.170194 eV Core-core repulsion = 24270.006013 eV Total energy + Delta-G solvation = -3935.164181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.31316 -41.63147 -39.46524 -37.24676 -36.78445 -34.86142 -34.27436 -33.55103 -31.62133 -30.62319 -29.20125 -27.85239 -27.34894 -26.25735 -25.05662 -24.71171 -23.03929 -22.29626 -21.84085 -21.32909 -19.99620 -19.37671 -18.59716 -18.19454 -17.45073 -16.96833 -16.69688 -16.54163 -16.19166 -15.89997 -15.56986 -15.15447 -15.06870 -14.80755 -14.67436 -14.29859 -14.27858 -14.15560 -13.94962 -13.77992 -13.53173 -13.35988 -13.08209 -12.96813 -12.76873 -12.66558 -12.56428 -12.46563 -12.18558 -12.07600 -11.89940 -11.86333 -11.84766 -11.78768 -11.54581 -11.33028 -11.07001 -10.93985 -10.83131 -10.21341 -10.01390 -8.99625 -7.91912 -5.21873 0.56978 1.07380 1.40522 1.47048 1.52894 1.53577 1.62173 1.85687 2.60955 2.75761 3.03140 3.39095 3.44719 3.57202 3.68633 3.73364 3.92529 3.96324 4.09209 4.17553 4.20371 4.24673 4.25276 4.29232 4.33561 4.37116 4.42029 4.53228 4.57772 4.65386 4.68469 4.79393 4.83756 4.90026 4.93928 4.98842 5.04704 5.10382 5.15402 5.21249 5.23353 5.29093 5.38462 5.47996 5.53422 5.54255 5.64634 6.27835 6.40874 6.95059 7.34882 7.52289 8.07181 8.31947 9.31942 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.001986 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.588515 B =14092.079361 C =15091.781854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.100 4.100 5 C -0.095 4.095 6 H 0.128 0.872 7 C -0.147 4.147 8 C 0.541 3.459 9 O -0.583 6.583 10 N -0.640 5.640 11 C 0.093 3.907 12 C 0.110 3.890 13 N -0.277 5.277 14 C -0.016 4.016 15 C -0.036 4.036 16 C 0.234 3.766 17 N -0.740 5.740 18 C -0.241 4.241 19 H 0.086 0.914 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.978 3.022 23 H -0.283 1.283 24 H -0.301 1.301 25 H -0.267 1.267 26 N -0.297 5.297 27 N -0.109 5.109 28 C 0.110 3.890 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.167 0.833 44 H 0.231 0.769 45 H 0.068 0.932 46 H 0.028 0.972 47 H 0.370 0.630 48 H 0.249 0.751 49 H 0.117 0.883 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.509 -12.327 -13.169 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.150 4.150 4 C -0.138 4.138 5 C -0.116 4.116 6 H 0.146 0.854 7 C -0.204 4.204 8 C 0.333 3.667 9 O -0.462 6.462 10 N -0.376 5.376 11 C -0.031 4.031 12 C 0.008 3.992 13 N -0.071 5.071 14 C -0.167 4.167 15 C -0.174 4.174 16 C 0.106 3.894 17 N -0.382 5.382 18 C -0.373 4.373 19 H 0.104 0.896 20 C -0.270 4.270 21 N -0.624 5.624 22 Si 0.806 3.194 23 H -0.210 1.210 24 H -0.228 1.228 25 H -0.191 1.191 26 N -0.164 5.164 27 N -0.087 5.087 28 C -0.013 4.013 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.185 0.815 44 H 0.247 0.753 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.201 0.799 48 H 0.058 0.942 49 H 0.135 0.865 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.403 -12.927 -14.366 32.720 hybrid contribution 0.776 -0.281 1.661 1.855 sum -25.627 -13.208 -12.705 31.505 Atomic orbital electron populations 1.21765 0.95098 1.01791 1.02210 1.21546 0.96448 0.97115 1.01602 1.21640 0.93081 0.96992 1.03297 1.21404 0.96431 0.94101 1.01891 1.21355 0.87858 0.99681 1.02725 0.85415 1.21911 1.03785 1.00678 0.94046 1.21181 0.91138 0.80683 0.73713 1.90722 1.71635 1.32129 1.51725 1.49699 1.08277 1.06305 1.73330 1.23574 0.85478 0.92289 1.01804 1.24137 0.92644 0.79531 1.02844 1.47408 1.21939 1.22759 1.15039 1.23754 1.05239 0.95495 0.92198 1.22307 0.96498 1.01462 0.97116 1.19007 0.93627 0.91910 0.84825 1.42530 1.47121 1.24454 1.24126 1.19713 1.16912 1.02002 0.98638 0.89591 1.25628 0.99847 0.98892 1.02675 1.69859 1.30684 1.23409 1.38485 0.85075 0.76346 0.78573 0.79357 1.21006 1.22819 1.19129 1.75060 1.23464 1.12551 1.05303 1.78205 1.02696 1.05751 1.22052 1.23942 0.96997 0.77396 1.02931 0.92343 0.92236 0.92878 0.92588 0.92755 0.90534 0.90618 0.92781 0.93229 0.93708 0.90527 0.88909 0.88665 0.89975 0.81517 0.75285 0.91479 0.95364 0.79909 0.94209 0.86534 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.13 -1.27 5.93 30.59 0.18 -1.09 16 3 C -0.11 -0.91 4.97 30.59 0.15 -0.76 16 4 C -0.10 -1.30 4.03 30.60 0.12 -1.17 16 5 C -0.10 -0.98 2.55 -11.54 -0.03 -1.01 16 6 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 7 C -0.15 -1.07 8.83 71.98 0.64 -0.44 16 8 C 0.54 9.97 7.38 87.66 0.65 10.62 16 9 O -0.58 -16.83 16.65 -3.05 -0.05 -16.88 16 10 N -0.64 -9.10 3.57 -837.12 -2.99 -12.09 16 11 C 0.09 1.62 8.64 86.48 0.75 2.36 16 12 C 0.11 1.45 5.15 46.75 0.24 1.69 16 13 N -0.28 -6.35 3.54 -332.03 -1.18 -7.52 16 14 C -0.02 -0.38 10.72 83.49 0.89 0.51 16 15 C -0.04 -1.25 6.61 41.60 0.28 -0.97 16 16 C 0.23 9.27 6.82 85.63 0.58 9.86 16 17 N -0.74 -37.98 5.59 -347.18 -1.94 -39.92 16 18 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 19 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 20 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 21 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 22 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 N -0.30 -11.66 12.41 -48.60 -0.60 -12.26 16 27 N -0.11 -3.55 13.17 37.02 0.49 -3.06 16 28 C 0.11 0.73 6.24 86.48 0.54 1.27 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.48 6.56 -2.39 -0.02 0.47 16 35 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.05 0.88 7.95 -2.39 -0.02 0.86 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.33 6.14 -2.39 -0.01 0.32 16 40 H 0.09 0.36 6.56 -2.39 -0.02 0.34 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.23 3.41 6.72 -2.91 -0.02 3.39 16 45 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.37 20.96 7.66 -92.71 -0.71 20.25 16 48 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 49 H 0.12 0.56 6.13 -2.39 -0.01 0.55 16 50 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: -1.00 -82.88 408.14 3.28 -79.60 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.23 Total: 20.74 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 7.01 Total: 3.83 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -5.94 Total: -135.37 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.05 Total: -16.88 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -82.88 3.28 -79.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105225338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.562 kcal (2) G-P(sol) polarization free energy of solvation -82.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds