Wall clock time and date at job start Tue Mar 31 2020 20:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00201 * 2 1 3 5 5 C 1.52999 * 109.46997 * 64.99874 * 4 2 1 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00040 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00033 * 180.02562 * 7 6 5 10 10 C 1.47059 * 136.05655 * 359.62490 * 9 7 6 11 11 C 1.53757 * 87.88961 * 152.96823 * 10 9 7 12 12 N 1.46502 * 114.57146 * 272.66675 * 11 10 9 13 13 C 1.35311 * 125.87132 * 8.38446 * 12 11 10 14 14 C 1.35348 * 106.17437 * 179.90748 * 13 12 11 15 15 C 1.50707 * 126.75066 * 180.12485 * 14 13 12 16 16 N 1.46497 * 109.47210 * 95.24337 * 15 14 13 17 17 C 1.36931 * 120.00290 * 180.02562 * 16 15 14 18 18 H 1.08007 * 120.00126 * 359.97438 * 17 16 15 19 19 C 1.38821 * 120.00381 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99242 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00256 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46856 * 89.99848 * 21 19 17 23 23 H 1.48496 * 109.47260 * 209.99909 * 21 19 17 24 24 H 1.48502 * 109.46967 * 329.99992 * 21 19 17 25 25 N 1.33767 * 106.50132 * 0.34831 * 14 13 12 26 26 N 1.28639 * 108.88190 * 359.77741 * 25 14 13 27 27 C 1.47065 * 136.05802 * 180.02562 * 9 7 6 28 28 H 1.08998 * 109.46817 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46504 * 300.00008 * 1 2 3 30 30 H 1.08992 * 109.47210 * 60.00114 * 1 2 3 31 31 H 1.09005 * 109.47078 * 239.99560 * 2 1 3 32 32 H 1.09005 * 109.46713 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46911 * 300.00077 * 3 2 1 34 34 H 1.08992 * 109.47188 * 59.99914 * 3 2 1 35 35 H 1.09000 * 109.46866 * 304.99661 * 4 2 1 36 36 H 1.09001 * 109.46611 * 184.99778 * 4 2 1 37 37 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 38 38 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 39 39 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 40 40 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 41 41 H 1.08999 * 113.47019 * 267.70212 * 10 9 7 42 42 H 1.09002 * 113.46932 * 38.13945 * 10 9 7 43 43 H 1.08998 * 114.08848 * 139.78341 * 11 10 9 44 44 H 1.08003 * 126.91289 * 0.02562 * 13 12 11 45 45 H 1.08996 * 109.47274 * 215.24494 * 15 14 13 46 46 H 1.08999 * 109.47009 * 335.24775 * 15 14 13 47 47 H 0.97007 * 119.99769 * 0.02562 * 16 15 14 48 48 H 0.97003 * 119.99416 * 179.97438 * 20 19 17 49 49 H 1.09000 * 113.46681 * 321.85688 * 27 9 7 50 50 H 1.08995 * 113.47456 * 92.24106 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6353 -2.1955 1.1879 6 6 2.1459 -2.9169 2.4369 7 6 1.7467 -4.3688 2.3769 8 8 1.1155 -4.7854 1.4287 9 7 2.0902 -5.2041 3.3773 10 6 2.8281 -5.0916 4.6444 11 6 1.9953 -6.2731 5.1685 12 7 0.7189 -5.8948 5.7802 13 6 0.1703 -4.6580 5.7696 14 6 -1.0000 -4.7589 6.4421 15 6 -1.9879 -3.6513 6.7039 16 7 -3.0315 -3.6746 5.6760 17 6 -4.0448 -2.7542 5.7080 18 1 -4.0749 -2.0112 6.4913 19 6 -5.0340 -2.7766 4.7343 20 7 -4.9975 -3.6824 3.7801 21 14 -6.4166 -1.5214 4.7784 22 1 -6.0216 -0.3222 3.9967 23 1 -7.6432 -2.1150 4.1883 24 1 -6.6842 -1.1290 6.1855 25 7 -1.1049 -6.0339 6.8329 26 7 -0.0705 -6.6808 6.4251 27 6 1.8981 -6.6306 3.6787 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6055 -0.2618 2.1370 36 1 3.1264 -0.6444 1.2951 37 1 2.0699 -2.6551 0.3002 38 1 0.5490 -2.2724 1.1421 39 1 3.2322 -2.8399 2.4823 40 1 1.7117 -2.4574 3.3249 41 1 3.8902 -5.3175 4.5497 42 1 2.6408 -4.1577 5.1743 43 1 2.5631 -6.9883 5.7636 44 1 0.5822 -3.7695 5.3142 45 1 -2.4410 -3.7930 7.6850 46 1 -1.4728 -2.6911 6.6769 47 1 -3.0047 -4.3422 4.9727 48 1 -5.6889 -3.6983 3.0999 49 1 0.9184 -7.0081 3.3859 50 1 2.7147 -7.2621 3.3288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105335177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:00 Heat of formation + Delta-G solvation = 102.106627 kcal Electronic energy + Delta-G solvation = -29265.313735 eV Core-core repulsion = 25331.413522 eV Total energy + Delta-G solvation = -3933.900213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.14270 -40.69092 -38.51181 -37.00543 -34.95061 -33.34117 -32.96439 -31.77934 -30.06764 -29.77766 -27.43593 -27.18618 -26.59774 -25.73564 -24.08570 -22.78966 -22.26230 -21.05646 -20.60949 -20.12477 -19.20935 -17.58885 -17.43298 -16.96339 -16.26504 -16.17938 -15.97247 -15.37876 -14.82795 -14.63116 -14.46825 -14.27145 -13.94828 -13.77067 -13.41208 -13.30423 -13.24154 -13.00735 -12.79408 -12.63067 -12.32676 -12.26882 -11.95201 -11.84120 -11.76396 -11.54586 -11.27083 -11.13981 -10.87653 -10.80878 -10.78253 -10.70798 -10.54340 -10.50197 -10.08452 -10.01051 -9.86289 -9.70043 -9.20302 -8.87014 -8.82709 -6.88546 -5.69597 -2.99904 1.73450 2.20967 2.32642 2.47461 2.88624 3.43234 3.47954 3.52811 3.55319 3.85855 4.30112 4.44818 4.54304 4.64209 4.68283 4.70787 4.73593 4.78163 4.83103 4.92627 5.01264 5.08745 5.16828 5.23537 5.30338 5.39331 5.41727 5.47044 5.48941 5.58916 5.61181 5.65014 5.71074 5.77191 5.80441 5.83765 6.04364 6.07361 6.11018 6.19642 6.30855 6.38222 6.38558 6.63803 6.72277 6.78065 7.29410 7.73940 7.92659 8.46795 8.80327 9.58557 10.14207 10.49948 11.52904 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.005904 B = 0.004514 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4741.579007 B = 6201.275057 C =10050.924431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.132 4.132 7 C 0.545 3.455 8 O -0.522 6.522 9 N -0.654 5.654 10 C 0.099 3.901 11 C 0.104 3.896 12 N -0.283 5.283 13 C -0.036 4.036 14 C -0.003 4.003 15 C 0.233 3.767 16 N -0.725 5.725 17 C -0.242 4.242 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 N -0.250 5.250 26 N -0.091 5.091 27 C 0.097 3.903 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.143 0.857 44 H 0.180 0.820 45 H 0.039 0.961 46 H 0.036 0.964 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.091 0.909 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.604 2.410 -2.357 25.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.171 4.171 7 C 0.335 3.665 8 O -0.396 6.396 9 N -0.393 5.393 10 C -0.025 4.025 11 C 0.000 4.000 12 N -0.077 5.077 13 C -0.186 4.186 14 C -0.140 4.140 15 C 0.104 3.896 16 N -0.370 5.370 17 C -0.373 4.373 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 N -0.117 5.117 26 N -0.069 5.069 27 C -0.027 4.027 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.112 0.888 43 H 0.161 0.839 44 H 0.197 0.803 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.109 0.891 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 24.834 1.046 -2.528 24.984 hybrid contribution -0.422 1.389 -0.750 1.634 sum 24.413 2.435 -3.278 24.752 Atomic orbital electron populations 1.21926 0.94787 1.02567 1.01790 1.21100 0.96347 0.95850 0.98163 1.21847 1.00528 0.96248 1.01832 1.21656 1.00355 0.94747 0.98371 1.21452 1.02894 0.94179 0.96126 1.21656 1.02610 0.90899 1.01979 1.20468 0.78526 0.87681 0.79778 1.90770 1.39061 1.77820 1.31994 1.49742 1.56628 1.10700 1.22189 1.23428 0.97351 0.98831 0.82890 1.22727 0.82262 0.99890 0.95127 1.46712 1.16570 1.07347 1.37088 1.23165 0.97744 0.90435 1.07264 1.22464 0.96097 0.94581 1.00900 1.18941 0.86925 0.89729 0.94005 1.42301 1.26284 1.38439 1.29978 1.19209 1.01421 1.07786 1.08879 0.90923 1.24757 0.99169 0.99042 0.97751 1.69690 1.35755 1.36229 1.16081 0.86183 0.81902 0.80653 0.77406 1.21728 1.21784 1.20654 1.75109 1.13278 1.04570 1.18760 1.78289 0.98545 1.19278 1.10812 1.23365 1.04688 0.84473 0.90158 0.91943 0.92419 0.92972 0.91411 0.92991 0.92830 0.92609 0.91594 0.92195 0.91397 0.90267 0.89072 0.88700 0.86677 0.88817 0.83945 0.80259 0.94299 0.94647 0.78095 0.93486 0.89069 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.95 37.16 0.33 -1.35 16 2 C -0.10 -0.89 2.92 -90.61 -0.26 -1.15 16 3 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 4 C -0.11 -1.00 4.68 -26.73 -0.13 -1.12 16 5 C -0.11 -1.16 4.26 -26.73 -0.11 -1.27 16 6 C -0.13 -1.21 5.53 -27.88 -0.15 -1.36 16 7 C 0.54 6.91 8.08 -10.99 -0.09 6.82 16 8 O -0.52 -9.27 16.76 5.56 0.09 -9.18 16 9 N -0.65 -6.32 3.43 -185.10 -0.63 -6.95 16 10 C 0.10 0.52 7.60 -8.39 -0.06 0.45 16 11 C 0.10 0.80 5.36 -67.67 -0.36 0.44 16 12 N -0.28 -3.84 3.56 -54.43 -0.19 -4.03 16 13 C -0.04 -0.55 10.40 -17.05 -0.18 -0.72 16 14 C 0.00 -0.06 6.61 -82.78 -0.55 -0.60 16 15 C 0.23 4.98 6.82 -5.19 -0.04 4.94 16 16 N -0.73 -19.43 5.59 -61.08 -0.34 -19.77 16 17 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 18 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -29.40 13.06 55.49 0.72 -28.67 16 21 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 N -0.25 -5.12 12.41 33.29 0.41 -4.71 16 26 N -0.09 -1.58 13.17 60.35 0.79 -0.79 16 27 C 0.10 0.85 8.42 -8.51 -0.07 0.78 16 28 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.08 1.07 6.52 -51.93 -0.34 0.74 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.09 0.44 7.00 -51.93 -0.36 0.07 16 43 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.18 2.23 7.22 -52.48 -0.38 1.85 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.39 11.30 7.66 -40.82 -0.31 10.99 16 48 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 49 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 412.64 15.07 6.22 6.22 Total: -1.00 -38.63 412.64 -7.99 -46.62 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.47 Total: 5.90 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.58 Total: -2.50 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: 0.76 Total: -64.92 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -38.63 -7.99 -46.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105335177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.726 kcal (2) G-P(sol) polarization free energy of solvation -38.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds