Wall clock time and date at job start Tue Mar 31 2020 20:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52989 * 109.47336 * 2 1 4 4 C 1.52997 * 109.47102 * 239.99640 * 2 1 3 5 5 C 1.53005 * 109.46699 * 119.99907 * 2 1 3 6 6 C 1.52998 * 109.47219 * 60.00111 * 5 2 1 7 7 C 1.50700 * 109.47246 * 180.02562 * 6 5 2 8 8 O 1.21279 * 119.99887 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00040 * 180.02562 * 7 6 5 10 10 C 1.47066 * 136.05579 * 180.02562 * 9 7 6 11 11 C 1.53504 * 88.04678 * 207.05024 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46502 * 109.47012 * 95.29485 * 15 14 13 17 17 C 1.36940 * 119.99817 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00251 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99852 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00071 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47230 * 59.99919 * 21 19 17 23 23 H 1.48500 * 109.47212 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47079 * 299.99817 * 21 19 17 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05760 * 359.93929 * 9 7 6 28 28 H 1.08999 * 109.47155 * 300.00291 * 1 2 3 29 29 H 1.09001 * 109.46420 * 60.00051 * 1 2 3 30 30 H 1.08997 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47360 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47325 * 299.99395 * 3 2 1 33 33 H 1.08999 * 109.47236 * 59.99758 * 3 2 1 34 34 H 1.09006 * 109.47415 * 300.00213 * 4 2 1 35 35 H 1.09002 * 109.47484 * 60.00066 * 4 2 1 36 36 H 1.09004 * 109.47192 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47155 * 299.99802 * 5 2 1 38 38 H 1.09004 * 109.47110 * 179.97438 * 5 2 1 39 39 H 1.08999 * 109.47309 * 59.99785 * 6 5 2 40 40 H 1.09004 * 109.47218 * 299.99786 * 6 5 2 41 41 H 1.09002 * 113.46793 * 321.85996 * 10 9 7 42 42 H 1.08999 * 113.46805 * 92.24363 * 10 9 7 43 43 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 44 44 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 45 45 H 1.08994 * 109.47050 * 215.29386 * 15 14 13 46 46 H 1.09006 * 109.47066 * 335.30102 * 15 14 13 47 47 H 0.96994 * 120.00188 * 359.97438 * 16 15 14 48 48 H 0.96999 * 119.99580 * 179.97438 * 20 19 17 49 49 H 1.08999 * 113.47096 * 267.69948 * 27 9 7 50 50 H 1.09005 * 113.46966 * 38.08340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1637 1.2493 7 6 2.0317 -2.8740 2.4801 8 8 2.7289 -2.2846 3.2785 9 7 1.7064 -4.1644 2.6932 10 6 1.9850 -5.1694 3.7302 11 6 1.8014 -6.2513 2.6568 12 7 1.0742 -7.4368 3.1171 13 6 -0.2712 -7.5766 3.1549 14 6 -0.5078 -8.8174 3.6412 15 6 -1.8542 -9.4538 3.8720 16 7 -2.2138 -10.2706 2.7102 17 6 -3.4030 -10.9494 2.6921 18 1 -4.0756 -10.8829 3.5345 19 6 -3.7435 -11.7238 1.5916 20 7 -2.9235 -11.8053 0.5651 21 14 -5.3653 -12.6502 1.5672 22 1 -6.4881 -11.6860 1.6886 23 1 -5.4896 -13.3972 0.2898 24 1 -5.4073 -13.6046 2.7042 25 7 0.6885 -9.3657 3.8813 26 7 1.6051 -8.5223 3.5603 27 6 0.9154 -5.1868 1.9919 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9562 -0.8900 33 1 1.6767 1.9562 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 1.6766 -0.2074 2.1393 38 1 3.1300 -0.7217 1.2492 39 1 1.8933 -2.6776 0.3594 40 1 0.4399 -2.1637 1.2493 41 1 2.9999 -5.1166 4.1243 42 1 1.2295 -5.2041 4.5151 43 1 2.7089 -6.4883 2.1014 44 1 -1.0079 -6.8460 2.8553 45 1 -1.8106 -10.0843 4.7599 46 1 -2.6041 -8.6757 4.0151 47 1 -1.6099 -10.3301 1.9535 48 1 -3.1614 -12.3467 -0.2037 49 1 -0.1253 -5.2269 2.3136 50 1 1.0199 -5.1483 0.9075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105347908.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:04 Heat of formation + Delta-G solvation = 105.981889 kcal Electronic energy + Delta-G solvation = -28171.138154 eV Core-core repulsion = 24237.405985 eV Total energy + Delta-G solvation = -3933.732169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.17177 -40.93287 -39.05396 -37.77849 -35.03203 -33.59053 -31.98482 -31.77721 -29.98566 -29.42259 -27.74219 -27.72397 -26.90191 -25.94550 -25.03177 -23.50562 -22.84454 -21.17716 -20.73929 -19.47112 -19.03643 -18.04767 -17.52226 -17.14418 -16.49189 -16.08526 -15.99293 -15.16868 -14.86772 -14.79034 -14.66522 -14.43056 -14.22039 -13.93644 -13.65241 -13.45700 -13.30880 -13.13311 -12.97841 -12.89508 -12.65841 -12.32695 -12.25522 -12.12010 -11.97164 -11.72487 -11.59451 -11.27843 -11.05716 -11.00744 -10.96627 -10.92917 -10.81055 -10.58351 -10.27706 -10.14411 -9.94920 -9.75375 -9.37901 -8.93831 -8.88127 -6.93941 -5.75618 -3.05437 1.67779 1.84503 2.09432 2.61752 2.83775 3.36610 3.45146 3.49745 3.50781 3.69513 4.09270 4.23497 4.26509 4.35403 4.42175 4.59594 4.63648 4.68169 4.70807 4.77846 4.80025 4.96921 5.02885 5.09393 5.12305 5.16898 5.18593 5.24623 5.28738 5.33950 5.42418 5.46521 5.48430 5.54963 5.59273 5.59536 5.71423 5.74451 5.83409 5.94484 5.95959 6.14642 6.33855 6.60559 6.64870 6.74086 7.06097 7.62234 7.69227 8.41619 8.75552 9.53444 10.08618 10.44542 11.46972 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.001994 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.403128 B =14042.234652 C =15497.117752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.093 4.093 6 C -0.138 4.138 7 C 0.550 3.450 8 O -0.531 6.531 9 N -0.647 5.647 10 C 0.099 3.901 11 C 0.112 3.888 12 N -0.292 5.292 13 C -0.046 4.046 14 C 0.000 4.000 15 C 0.232 3.768 16 N -0.725 5.725 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.285 1.285 25 N -0.250 5.250 26 N -0.089 5.089 27 C 0.096 3.904 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.149 0.851 44 H 0.189 0.811 45 H 0.040 0.960 46 H 0.038 0.962 47 H 0.386 0.614 48 H 0.256 0.744 49 H 0.104 0.896 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.302 26.798 -1.837 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.131 4.131 6 C -0.178 4.178 7 C 0.340 3.660 8 O -0.406 6.406 9 N -0.384 5.384 10 C -0.025 4.025 11 C 0.007 3.993 12 N -0.087 5.087 13 C -0.196 4.196 14 C -0.137 4.137 15 C 0.103 3.897 16 N -0.370 5.370 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 N -0.117 5.117 26 N -0.068 5.068 27 C -0.028 4.028 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.166 0.834 44 H 0.206 0.794 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.121 0.879 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.918 26.583 -1.092 29.152 hybrid contribution -1.680 -0.030 -0.674 1.810 sum 10.238 26.553 -1.765 28.513 Atomic orbital electron populations 1.21966 0.94466 1.01963 1.01958 1.20584 0.95795 0.95695 0.95085 1.21851 1.01080 0.95096 1.01814 1.21964 1.01127 1.00310 0.96927 1.21425 1.01418 0.92527 0.97729 1.21825 1.03049 0.97195 0.95711 1.20444 0.79536 0.78094 0.87882 1.90743 1.38100 1.63950 1.47827 1.49330 1.52637 1.10083 1.26388 1.23369 1.04301 0.82409 0.92429 1.23369 0.97479 0.80444 0.97967 1.46994 1.05599 1.12808 1.43295 1.23324 0.85332 1.01673 1.09290 1.22494 0.96491 0.92176 1.02576 1.18969 0.84963 0.93246 0.92567 1.42289 1.21951 1.55857 1.16939 1.19182 0.95079 1.21524 1.01404 0.90921 1.24762 0.98661 1.00771 0.96699 1.69671 1.36743 1.44301 1.07317 0.86230 0.83262 0.79681 0.76756 1.21239 1.21745 1.21175 1.75132 0.97803 1.21737 1.17048 1.78314 1.22642 0.90615 1.15192 1.23449 0.96897 0.82377 1.00067 0.92534 0.92546 0.92361 0.92577 0.92567 0.92575 0.92385 0.92546 0.92543 0.91069 0.91046 0.88340 0.88336 0.88531 0.88636 0.83377 0.79419 0.94234 0.94428 0.78089 0.93455 0.87851 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.12 37.16 0.30 -0.42 16 2 C -0.07 -0.37 0.80 -154.51 -0.12 -0.50 16 3 C -0.14 -0.73 8.47 37.15 0.31 -0.41 16 4 C -0.15 -0.70 8.12 37.16 0.30 -0.40 16 5 C -0.09 -0.61 3.56 -26.73 -0.10 -0.70 16 6 C -0.14 -0.82 4.82 -27.88 -0.13 -0.95 16 7 C 0.55 5.01 8.08 -10.98 -0.09 4.92 16 8 O -0.53 -6.95 16.76 5.56 0.09 -6.86 16 9 N -0.65 -4.96 3.69 -185.01 -0.68 -5.65 16 10 C 0.10 0.79 8.42 -8.50 -0.07 0.72 16 11 C 0.11 0.90 5.34 -67.69 -0.36 0.54 16 12 N -0.29 -3.68 3.56 -54.46 -0.19 -3.87 16 13 C -0.05 -0.63 10.72 -17.04 -0.18 -0.81 16 14 C 0.00 0.00 6.62 -82.78 -0.55 -0.54 16 15 C 0.23 4.69 6.82 -5.19 -0.04 4.65 16 16 N -0.73 -18.48 5.59 -61.08 -0.34 -18.82 16 17 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 21 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 N -0.25 -4.88 12.41 33.29 0.41 -4.47 16 26 N -0.09 -1.49 13.16 60.35 0.79 -0.69 16 27 C 0.10 0.56 7.77 -8.43 -0.07 0.49 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 6.43 -51.93 -0.33 -0.07 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.25 6.43 -51.93 -0.33 -0.08 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.55 8.10 -51.93 -0.42 0.12 16 38 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 39 H 0.10 0.45 6.43 -51.93 -0.33 0.11 16 40 H 0.10 0.47 6.43 -51.93 -0.33 0.13 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.15 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.19 1.84 6.78 -52.49 -0.36 1.48 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.39 10.59 7.66 -40.82 -0.31 10.28 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.10 0.53 6.38 -51.93 -0.33 0.20 16 50 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -35.66 406.97 -7.34 -43.00 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.22 Total: 2.27 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.03 Total: -0.71 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 0.71 Total: -61.01 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.09 Total: -6.86 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.66 -7.34 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105347908.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.982 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds