Wall clock time and date at job start Tue Mar 31 2020 20:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52989 * 109.47336 * 2 1 4 4 C 1.52997 * 109.47102 * 239.99640 * 2 1 3 5 5 C 1.53005 * 109.46699 * 119.99907 * 2 1 3 6 6 C 1.52998 * 109.47219 * 60.00111 * 5 2 1 7 7 C 1.50700 * 109.47246 * 180.02562 * 6 5 2 8 8 O 1.21279 * 119.99887 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00040 * 180.02562 * 7 6 5 10 10 C 1.47066 * 136.05579 * 180.02562 * 9 7 6 11 11 C 1.53504 * 88.04678 * 207.05024 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46502 * 109.47012 * 95.29485 * 15 14 13 17 17 C 1.36940 * 119.99817 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00251 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99852 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00071 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47230 * 59.99919 * 21 19 17 23 23 H 1.48500 * 109.47212 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47079 * 299.99817 * 21 19 17 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05760 * 359.93929 * 9 7 6 28 28 H 1.08999 * 109.47155 * 300.00291 * 1 2 3 29 29 H 1.09001 * 109.46420 * 60.00051 * 1 2 3 30 30 H 1.08997 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47360 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47325 * 299.99395 * 3 2 1 33 33 H 1.08999 * 109.47236 * 59.99758 * 3 2 1 34 34 H 1.09006 * 109.47415 * 300.00213 * 4 2 1 35 35 H 1.09002 * 109.47484 * 60.00066 * 4 2 1 36 36 H 1.09004 * 109.47192 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47155 * 299.99802 * 5 2 1 38 38 H 1.09004 * 109.47110 * 179.97438 * 5 2 1 39 39 H 1.08999 * 109.47309 * 59.99785 * 6 5 2 40 40 H 1.09004 * 109.47218 * 299.99786 * 6 5 2 41 41 H 1.09002 * 113.46793 * 321.85996 * 10 9 7 42 42 H 1.08999 * 113.46805 * 92.24363 * 10 9 7 43 43 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 44 44 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 45 45 H 1.08994 * 109.47050 * 215.29386 * 15 14 13 46 46 H 1.09006 * 109.47066 * 335.30102 * 15 14 13 47 47 H 0.96994 * 120.00188 * 359.97438 * 16 15 14 48 48 H 0.96999 * 119.99580 * 179.97438 * 20 19 17 49 49 H 1.08999 * 113.47096 * 267.69948 * 27 9 7 50 50 H 1.09005 * 113.46966 * 38.08340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1637 1.2493 7 6 2.0317 -2.8740 2.4801 8 8 2.7289 -2.2846 3.2785 9 7 1.7064 -4.1644 2.6932 10 6 1.9850 -5.1694 3.7302 11 6 1.8014 -6.2513 2.6568 12 7 1.0742 -7.4368 3.1171 13 6 -0.2712 -7.5766 3.1549 14 6 -0.5078 -8.8174 3.6412 15 6 -1.8542 -9.4538 3.8720 16 7 -2.2138 -10.2706 2.7102 17 6 -3.4030 -10.9494 2.6921 18 1 -4.0756 -10.8829 3.5345 19 6 -3.7435 -11.7238 1.5916 20 7 -2.9235 -11.8053 0.5651 21 14 -5.3653 -12.6502 1.5672 22 1 -6.4881 -11.6860 1.6886 23 1 -5.4896 -13.3972 0.2898 24 1 -5.4073 -13.6046 2.7042 25 7 0.6885 -9.3657 3.8813 26 7 1.6051 -8.5223 3.5603 27 6 0.9154 -5.1868 1.9919 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9562 -0.8900 33 1 1.6767 1.9562 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 1.6766 -0.2074 2.1393 38 1 3.1300 -0.7217 1.2492 39 1 1.8933 -2.6776 0.3594 40 1 0.4399 -2.1637 1.2493 41 1 2.9999 -5.1166 4.1243 42 1 1.2295 -5.2041 4.5151 43 1 2.7089 -6.4883 2.1014 44 1 -1.0079 -6.8460 2.8553 45 1 -1.8106 -10.0843 4.7599 46 1 -2.6041 -8.6757 4.0151 47 1 -1.6099 -10.3301 1.9535 48 1 -3.1614 -12.3467 -0.2037 49 1 -0.1253 -5.2269 2.3136 50 1 1.0199 -5.1483 0.9075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105347908.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:03 Heat of formation + Delta-G solvation = 81.566216 kcal Electronic energy + Delta-G solvation = -28172.196897 eV Core-core repulsion = 24237.405985 eV Total energy + Delta-G solvation = -3934.790912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.32361 -41.62331 -39.67491 -38.35763 -36.77698 -34.81132 -33.57802 -32.45333 -31.61267 -30.16342 -28.11476 -28.09491 -27.79103 -27.29172 -25.81897 -24.72575 -24.25896 -22.35784 -21.80499 -20.08552 -19.47826 -19.37133 -18.72431 -18.14272 -17.39745 -16.91332 -16.72345 -16.54678 -16.06163 -15.66904 -15.40461 -15.26915 -15.11145 -15.01335 -14.77216 -14.40033 -14.26587 -14.03535 -13.84662 -13.83204 -13.38491 -13.31113 -13.01062 -12.72158 -12.70910 -12.67683 -12.55810 -12.51784 -12.35140 -12.10581 -12.01714 -11.88158 -11.78295 -11.50554 -11.41156 -11.40263 -11.07636 -10.97730 -10.90815 -10.21673 -10.01622 -8.97889 -7.89947 -5.19797 0.57632 1.04408 1.43250 1.47413 1.54034 1.56412 1.62332 1.88280 2.62349 2.71013 3.09056 3.39885 3.45988 3.56120 3.70323 3.79795 3.91986 3.95207 3.98782 4.15427 4.20785 4.26931 4.27098 4.34032 4.36639 4.42213 4.53131 4.54540 4.65560 4.67312 4.69915 4.81919 4.85985 4.89978 4.95938 5.05353 5.10175 5.14522 5.15286 5.18480 5.21002 5.28132 5.42369 5.54739 5.55114 5.56296 5.64666 6.29921 6.43719 6.95310 7.37126 7.52188 8.08878 8.34365 9.33565 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.001994 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.403128 B =14042.234652 C =15497.117752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.143 4.143 4 C -0.146 4.146 5 C -0.090 4.090 6 C -0.130 4.130 7 C 0.546 3.454 8 O -0.580 6.580 9 N -0.644 5.644 10 C 0.096 3.904 11 C 0.103 3.897 12 N -0.274 5.274 13 C -0.015 4.015 14 C -0.036 4.036 15 C 0.234 3.766 16 N -0.738 5.738 17 C -0.243 4.243 18 H 0.084 0.916 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.977 3.023 22 H -0.271 1.271 23 H -0.299 1.299 24 H -0.281 1.281 25 N -0.297 5.297 26 N -0.109 5.109 27 C 0.106 3.894 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.162 0.838 44 H 0.233 0.767 45 H 0.027 0.973 46 H 0.066 0.934 47 H 0.372 0.628 48 H 0.250 0.750 49 H 0.120 0.880 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.888 28.219 -2.808 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.200 4.200 4 C -0.203 4.203 5 C -0.128 4.128 6 C -0.169 4.169 7 C 0.339 3.661 8 O -0.459 6.459 9 N -0.380 5.380 10 C -0.028 4.028 11 C 0.001 3.999 12 N -0.069 5.069 13 C -0.166 4.166 14 C -0.174 4.174 15 C 0.107 3.893 16 N -0.381 5.381 17 C -0.374 4.374 18 H 0.102 0.898 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.806 3.194 22 H -0.197 1.197 23 H -0.225 1.225 24 H -0.207 1.207 25 N -0.164 5.164 26 N -0.087 5.087 27 C -0.018 4.018 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.179 0.821 44 H 0.249 0.751 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.138 0.862 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.512 28.019 -2.028 29.995 hybrid contribution -1.142 -0.351 -0.294 1.230 sum 9.370 27.669 -2.322 29.305 Atomic orbital electron populations 1.21969 0.93905 1.02559 1.01904 1.20550 0.96166 0.95417 0.94644 1.21872 1.00880 0.95386 1.01893 1.21968 1.00924 1.00818 0.96601 1.21357 1.00447 0.93253 0.97722 1.21866 1.04047 0.96265 0.94754 1.21029 0.78720 0.78184 0.88185 1.90727 1.40401 1.65147 1.49618 1.49308 1.52472 1.09860 1.26383 1.23367 1.04154 0.82600 0.92696 1.23789 0.98551 0.79047 0.98535 1.47274 1.05654 1.12752 1.41186 1.23778 0.86186 1.00556 1.06080 1.22303 0.95305 0.94158 1.05645 1.18988 0.87166 0.93101 0.90093 1.42488 1.21118 1.56520 1.17967 1.19649 0.95759 1.20730 1.01308 0.89832 1.25609 1.02219 1.02396 0.96685 1.69841 1.38754 1.45632 1.07970 0.85160 0.79613 0.78421 0.76222 1.19705 1.22508 1.20740 1.75061 0.98829 1.23650 1.18814 1.78211 1.22456 0.91752 1.16308 1.23635 0.96816 0.79710 1.01597 0.93009 0.92232 0.91413 0.92964 0.91959 0.93017 0.91396 0.92241 0.92942 0.92729 0.92602 0.86215 0.86387 0.89143 0.88563 0.82089 0.75111 0.95545 0.91654 0.79719 0.94109 0.86178 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.12 71.98 0.58 -0.53 16 2 C -0.07 -0.60 0.80 -52.18 -0.04 -0.64 16 3 C -0.14 -1.37 8.47 71.98 0.61 -0.76 16 4 C -0.15 -1.08 8.12 71.98 0.58 -0.49 16 5 C -0.09 -1.08 3.56 30.60 0.11 -0.97 16 6 C -0.13 -1.19 4.82 29.85 0.14 -1.05 16 7 C 0.55 8.98 8.08 87.66 0.71 9.69 16 8 O -0.58 -15.10 16.76 -3.03 -0.05 -15.16 16 9 N -0.64 -8.11 3.69 -857.64 -3.17 -11.27 16 10 C 0.10 1.35 8.42 83.18 0.70 2.05 16 11 C 0.10 1.36 5.34 45.50 0.24 1.61 16 12 N -0.27 -6.29 3.56 -326.21 -1.16 -7.45 16 13 C -0.01 -0.36 10.72 83.49 0.89 0.54 16 14 C -0.04 -1.25 6.62 41.60 0.28 -0.98 16 15 C 0.23 9.29 6.82 85.63 0.58 9.87 16 16 N -0.74 -37.44 5.59 -347.17 -1.94 -39.38 16 17 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 18 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 19 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 20 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 21 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 N -0.30 -11.66 12.41 -48.60 -0.60 -12.26 16 26 N -0.11 -3.57 13.16 37.02 0.49 -3.08 16 27 C 0.11 0.76 7.77 83.23 0.65 1.41 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.38 6.43 -2.39 -0.02 0.37 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.36 6.43 -2.38 -0.02 0.35 16 35 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 38 H 0.06 0.84 8.10 -2.38 -0.02 0.82 16 39 H 0.12 0.62 6.43 -2.39 -0.02 0.61 16 40 H 0.12 0.67 6.43 -2.39 -0.02 0.65 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.23 3.33 6.78 -2.91 -0.02 3.31 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 47 H 0.37 20.61 7.66 -92.71 -0.71 19.90 16 48 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 49 H 0.12 0.55 6.38 -2.39 -0.02 0.54 16 50 H 0.13 0.28 8.14 -2.38 -0.02 0.26 16 Total: -1.00 -80.00 406.97 3.45 -76.54 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.23 Total: 20.39 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 7.35 Total: 3.35 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -6.10 Total: -132.57 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.05 Total: -15.16 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -80.00 3.45 -76.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105347908.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.111 kcal (2) G-P(sol) polarization free energy of solvation -79.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds