Wall clock time and date at job start Tue Mar 31 2020 20:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47123 * 2 1 4 4 C 1.52999 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47134 * 305.00273 * 4 3 2 6 6 C 1.53002 * 109.47139 * 64.99981 * 4 3 2 7 7 C 1.53005 * 109.47280 * 185.46704 * 6 4 3 8 8 C 1.50697 * 109.47648 * 185.00002 * 4 3 2 9 9 O 1.21280 * 120.00296 * 275.18248 * 8 4 3 10 10 N 1.34777 * 119.99997 * 95.17717 * 8 4 3 11 11 C 1.47579 * 134.49201 * 175.05045 * 10 8 4 12 12 C 1.53953 * 86.11748 * 155.36122 * 11 10 8 13 13 N 1.46496 * 113.74040 * 137.95236 * 12 11 10 14 14 C 1.35317 * 125.86982 * 275.31902 * 13 12 11 15 15 C 1.35346 * 106.17448 * 180.12139 * 14 13 12 16 16 C 1.50703 * 126.75086 * 179.85445 * 15 14 13 17 17 N 1.46506 * 109.46931 * 94.71481 * 16 15 14 18 18 C 1.36935 * 119.99780 * 179.72665 * 17 16 15 19 19 H 1.08004 * 119.99958 * 0.27508 * 18 17 16 20 20 C 1.38811 * 119.99739 * 180.27228 * 18 17 16 21 21 N 1.31613 * 120.00319 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99786 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47101 * 60.00174 * 22 20 18 24 24 H 1.48495 * 109.47021 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46864 * 300.00348 * 22 20 18 26 26 N 1.33770 * 106.49906 * 359.59867 * 15 14 13 27 27 N 1.28636 * 108.88318 * 0.25914 * 26 15 14 28 28 C 1.47584 * 134.49219 * 355.05150 * 10 8 4 29 29 H 1.09000 * 109.47207 * 300.00078 * 1 2 3 30 30 H 1.09005 * 109.47182 * 59.99952 * 1 2 3 31 31 H 1.08997 * 109.47457 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46694 * 239.99893 * 2 1 3 33 33 H 1.09001 * 109.46694 * 120.00122 * 2 1 3 34 34 H 1.08997 * 109.47422 * 60.00339 * 3 2 1 35 35 H 1.08992 * 109.47328 * 299.99825 * 3 2 1 36 36 H 1.09006 * 109.46879 * 305.46288 * 6 4 3 37 37 H 1.08990 * 109.47307 * 65.46404 * 6 4 3 38 38 H 1.08991 * 109.47095 * 174.75140 * 7 6 4 39 39 H 1.08996 * 109.46516 * 294.75170 * 7 6 4 40 40 H 1.08999 * 109.47122 * 54.74758 * 7 6 4 41 41 H 1.08996 * 113.77473 * 41.06170 * 11 10 8 42 42 H 1.08997 * 113.76923 * 269.65651 * 11 10 8 43 43 H 1.09003 * 113.73978 * 269.15583 * 12 11 10 44 44 H 1.07996 * 126.91242 * 359.97438 * 14 13 12 45 45 H 1.08999 * 109.47131 * 334.71629 * 16 15 14 46 46 H 1.08992 * 109.47361 * 214.71254 * 16 15 14 47 47 H 0.96996 * 119.99806 * 359.97438 * 17 16 15 48 48 H 0.97003 * 120.00450 * 179.97438 * 21 20 18 49 49 H 1.09000 * 113.77011 * 90.33984 * 28 10 8 50 50 H 1.09004 * 113.76990 * 318.93589 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 5.6044 0.7071 -1.2497 8 6 4.0724 2.8578 0.1245 9 8 4.1855 3.5499 -0.8650 10 7 4.3958 3.3546 1.3349 11 6 4.9878 4.6207 1.8086 12 6 4.2801 4.3301 3.1447 13 7 5.1031 4.6162 4.3224 14 6 6.0077 3.7785 4.8800 15 6 6.5305 4.4391 5.9392 16 6 7.5819 3.9288 6.8907 17 7 8.9030 4.3804 6.4466 18 6 10.0193 4.0410 7.1634 19 1 9.9263 3.4367 8.0537 20 6 11.2704 4.4736 6.7457 21 7 11.3837 5.2105 5.6611 22 14 12.7931 4.0112 7.7240 23 1 12.9218 2.5325 7.7700 24 1 13.9947 4.5931 7.0739 25 1 12.6732 4.5409 9.1062 26 7 5.9346 5.6363 5.9721 27 7 5.0942 5.7098 5.0010 28 6 4.3004 2.8508 2.7188 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9562 -0.8899 36 1 3.6395 -0.1549 -1.4433 37 1 3.7997 1.4748 -2.1410 38 1 5.9596 0.1883 -2.1400 39 1 6.0493 1.7012 -1.2066 40 1 5.8896 0.1425 -0.3620 41 1 4.6083 5.5030 1.2934 42 1 6.0756 4.5997 1.8741 43 1 3.2788 4.7554 3.2124 44 1 6.2599 2.7822 4.5481 45 1 7.5575 2.8393 6.9088 46 1 7.3840 4.3133 7.8912 47 1 8.9865 4.9228 5.6468 48 1 12.2579 5.5131 5.3694 49 1 5.1863 2.3100 3.0516 50 1 3.3720 2.3202 2.9301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105354519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:45 Heat of formation + Delta-G solvation = 99.061441 kcal Electronic energy + Delta-G solvation = -28680.241893 eV Core-core repulsion = 24746.209631 eV Total energy + Delta-G solvation = -3934.032262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.14779 -40.92416 -38.84581 -36.56853 -35.01700 -33.53233 -33.45274 -31.86944 -30.30640 -29.96335 -28.94278 -27.04251 -25.92222 -25.06855 -23.99537 -22.85084 -22.74584 -21.42516 -20.92811 -20.61125 -19.19574 -18.09754 -17.64807 -17.04604 -16.46834 -15.99403 -15.72101 -15.52748 -15.02310 -14.67410 -14.57945 -14.35436 -13.91405 -13.73564 -13.69316 -13.58852 -13.33173 -13.28978 -13.11506 -12.76030 -12.64478 -12.49345 -12.15613 -12.07942 -11.82230 -11.76092 -11.58962 -11.30359 -11.27019 -11.17484 -10.91255 -10.89172 -10.80339 -10.53658 -10.14902 -10.08457 -9.92722 -9.74370 -9.29486 -8.92703 -8.87552 -6.93210 -5.74549 -3.04554 1.68659 1.89952 2.12991 2.61772 2.84774 3.44145 3.45795 3.50305 3.51508 3.67116 4.10103 4.21795 4.23488 4.37651 4.56515 4.61261 4.62930 4.64628 4.72093 4.74768 4.81960 4.91077 5.02694 5.09149 5.11421 5.16560 5.19964 5.25967 5.29220 5.34647 5.39246 5.42752 5.43948 5.60367 5.62426 5.67124 5.72417 5.75614 5.80542 5.86742 5.94198 6.15350 6.34762 6.61170 6.65845 6.74717 7.08652 7.69521 7.69821 8.42443 8.76598 9.54241 10.09499 10.45255 11.47988 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.002235 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.529705 B =12525.002886 C =13324.712025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.101 4.101 5 H 0.090 0.910 6 C -0.111 4.111 7 C -0.157 4.157 8 C 0.551 3.449 9 O -0.528 6.528 10 N -0.645 5.645 11 C 0.102 3.898 12 C 0.113 3.887 13 N -0.295 5.295 14 C -0.046 4.046 15 C 0.000 4.000 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.285 1.285 26 N -0.250 5.250 27 N -0.090 5.090 28 C 0.099 3.901 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.145 0.855 44 H 0.188 0.812 45 H 0.038 0.962 46 H 0.040 0.960 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.104 0.896 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.197 -12.919 -13.291 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.122 4.122 5 H 0.109 0.891 6 C -0.149 4.149 7 C -0.215 4.215 8 C 0.341 3.659 9 O -0.402 6.402 10 N -0.382 5.382 11 C -0.021 4.021 12 C 0.010 3.990 13 N -0.089 5.089 14 C -0.196 4.196 15 C -0.138 4.138 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 N -0.118 5.118 27 N -0.069 5.069 28 C -0.025 4.025 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.162 0.838 44 H 0.205 0.795 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.122 0.878 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.708 -11.281 -13.797 29.659 hybrid contribution 1.448 -1.059 0.078 1.795 sum -22.260 -12.339 -13.719 28.913 Atomic orbital electron populations 1.21774 0.95550 1.01813 1.01971 1.21585 0.96093 0.95955 1.02538 1.21551 0.92001 0.98029 1.03072 1.21422 0.97361 0.92312 1.01147 0.89148 1.21523 0.96305 1.01075 0.95951 1.21829 0.95513 1.02168 1.01965 1.20385 0.76324 0.88846 0.80364 1.90730 1.53453 1.60572 1.35484 1.49736 1.63475 1.19550 1.05453 1.23616 0.99970 0.88911 0.89613 1.23674 0.96246 0.97618 0.81507 1.47115 1.28124 1.11724 1.21976 1.23312 0.97262 1.00347 0.98710 1.22494 1.01060 0.91440 0.98764 1.18964 0.82116 0.95916 0.92728 1.42297 0.99638 1.63440 1.31682 1.19174 0.85090 1.26884 1.06078 0.90919 1.24765 0.97644 1.00444 0.98030 1.69665 1.23279 1.40269 1.24772 0.86233 0.82641 0.77810 0.79268 1.21237 1.21745 1.21168 1.75131 1.05415 1.18236 1.13005 1.78306 1.19233 1.06400 1.02913 1.23642 1.04646 0.94603 0.79615 0.92688 0.92643 0.92561 0.91351 0.91717 0.91576 0.90895 0.90604 0.90523 0.92202 0.92572 0.92668 0.88097 0.88213 0.83759 0.79469 0.94438 0.94255 0.78109 0.93437 0.87837 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.54 5.69 -26.74 -0.15 -0.69 16 3 C -0.11 -0.60 4.66 -26.74 -0.12 -0.73 16 4 C -0.10 -0.68 2.05 -91.77 -0.19 -0.87 16 5 H 0.09 0.48 7.76 -51.93 -0.40 0.08 16 6 C -0.11 -0.78 5.04 -26.73 -0.13 -0.92 16 7 C -0.16 -1.24 9.65 37.16 0.36 -0.88 16 8 C 0.55 5.45 6.19 -10.99 -0.07 5.39 16 9 O -0.53 -7.34 16.73 5.56 0.09 -7.25 16 10 N -0.64 -5.43 3.61 -178.52 -0.64 -6.08 16 11 C 0.10 0.95 8.64 -2.97 -0.03 0.93 16 12 C 0.11 0.93 5.15 -70.13 -0.36 0.56 16 13 N -0.29 -3.73 3.54 -56.29 -0.20 -3.93 16 14 C -0.05 -0.63 10.72 -17.05 -0.18 -0.82 16 15 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 16 C 0.23 4.71 6.82 -5.19 -0.04 4.67 16 17 N -0.73 -18.64 5.59 -61.08 -0.34 -18.98 16 18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 22 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 N -0.25 -4.91 12.41 33.29 0.41 -4.50 16 27 N -0.09 -1.51 13.16 60.35 0.79 -0.71 16 28 C 0.10 0.58 7.70 -2.97 -0.02 0.55 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.29 6.45 -51.93 -0.34 -0.05 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.40 6.33 -51.93 -0.33 0.07 16 37 H 0.08 0.66 7.66 -51.93 -0.40 0.26 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.57 7.43 -51.93 -0.39 0.18 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.19 1.87 6.72 -52.49 -0.35 1.52 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.39 10.71 7.66 -40.82 -0.31 10.40 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.10 0.55 6.31 -51.93 -0.33 0.23 16 50 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 409.75 15.07 6.17 6.17 Total: -1.00 -35.92 409.75 -7.68 -43.60 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.31 Total: 3.12 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.36 Total: -0.98 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.75 Total: -62.01 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.25 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.92 -7.68 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.661 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds