Wall clock time and date at job start Tue Mar 31 2020 20:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47123 * 2 1 4 4 C 1.52999 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47134 * 305.00273 * 4 3 2 6 6 C 1.53002 * 109.47139 * 64.99981 * 4 3 2 7 7 C 1.53005 * 109.47280 * 185.46704 * 6 4 3 8 8 C 1.50697 * 109.47648 * 185.00002 * 4 3 2 9 9 O 1.21280 * 120.00296 * 275.18248 * 8 4 3 10 10 N 1.34777 * 119.99997 * 95.17717 * 8 4 3 11 11 C 1.47579 * 134.49201 * 175.05045 * 10 8 4 12 12 C 1.53953 * 86.11748 * 155.36122 * 11 10 8 13 13 N 1.46496 * 113.74040 * 137.95236 * 12 11 10 14 14 C 1.35317 * 125.86982 * 275.31902 * 13 12 11 15 15 C 1.35346 * 106.17448 * 180.12139 * 14 13 12 16 16 C 1.50703 * 126.75086 * 179.85445 * 15 14 13 17 17 N 1.46506 * 109.46931 * 94.71481 * 16 15 14 18 18 C 1.36935 * 119.99780 * 179.72665 * 17 16 15 19 19 H 1.08004 * 119.99958 * 0.27508 * 18 17 16 20 20 C 1.38811 * 119.99739 * 180.27228 * 18 17 16 21 21 N 1.31613 * 120.00319 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99786 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47101 * 60.00174 * 22 20 18 24 24 H 1.48495 * 109.47021 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46864 * 300.00348 * 22 20 18 26 26 N 1.33770 * 106.49906 * 359.59867 * 15 14 13 27 27 N 1.28636 * 108.88318 * 0.25914 * 26 15 14 28 28 C 1.47584 * 134.49219 * 355.05150 * 10 8 4 29 29 H 1.09000 * 109.47207 * 300.00078 * 1 2 3 30 30 H 1.09005 * 109.47182 * 59.99952 * 1 2 3 31 31 H 1.08997 * 109.47457 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46694 * 239.99893 * 2 1 3 33 33 H 1.09001 * 109.46694 * 120.00122 * 2 1 3 34 34 H 1.08997 * 109.47422 * 60.00339 * 3 2 1 35 35 H 1.08992 * 109.47328 * 299.99825 * 3 2 1 36 36 H 1.09006 * 109.46879 * 305.46288 * 6 4 3 37 37 H 1.08990 * 109.47307 * 65.46404 * 6 4 3 38 38 H 1.08991 * 109.47095 * 174.75140 * 7 6 4 39 39 H 1.08996 * 109.46516 * 294.75170 * 7 6 4 40 40 H 1.08999 * 109.47122 * 54.74758 * 7 6 4 41 41 H 1.08996 * 113.77473 * 41.06170 * 11 10 8 42 42 H 1.08997 * 113.76923 * 269.65651 * 11 10 8 43 43 H 1.09003 * 113.73978 * 269.15583 * 12 11 10 44 44 H 1.07996 * 126.91242 * 359.97438 * 14 13 12 45 45 H 1.08999 * 109.47131 * 334.71629 * 16 15 14 46 46 H 1.08992 * 109.47361 * 214.71254 * 16 15 14 47 47 H 0.96996 * 119.99806 * 359.97438 * 17 16 15 48 48 H 0.97003 * 120.00450 * 179.97438 * 21 20 18 49 49 H 1.09000 * 113.77011 * 90.33984 * 28 10 8 50 50 H 1.09004 * 113.76990 * 318.93589 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 5.6044 0.7071 -1.2497 8 6 4.0724 2.8578 0.1245 9 8 4.1855 3.5499 -0.8650 10 7 4.3958 3.3546 1.3349 11 6 4.9878 4.6207 1.8086 12 6 4.2801 4.3301 3.1447 13 7 5.1031 4.6162 4.3224 14 6 6.0077 3.7785 4.8800 15 6 6.5305 4.4391 5.9392 16 6 7.5819 3.9288 6.8907 17 7 8.9030 4.3804 6.4466 18 6 10.0193 4.0410 7.1634 19 1 9.9263 3.4367 8.0537 20 6 11.2704 4.4736 6.7457 21 7 11.3837 5.2105 5.6611 22 14 12.7931 4.0112 7.7240 23 1 12.9218 2.5325 7.7700 24 1 13.9947 4.5931 7.0739 25 1 12.6732 4.5409 9.1062 26 7 5.9346 5.6363 5.9721 27 7 5.0942 5.7098 5.0010 28 6 4.3004 2.8508 2.7188 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9562 -0.8899 36 1 3.6395 -0.1549 -1.4433 37 1 3.7997 1.4748 -2.1410 38 1 5.9596 0.1883 -2.1400 39 1 6.0493 1.7012 -1.2066 40 1 5.8896 0.1425 -0.3620 41 1 4.6083 5.5030 1.2934 42 1 6.0756 4.5997 1.8741 43 1 3.2788 4.7554 3.2124 44 1 6.2599 2.7822 4.5481 45 1 7.5575 2.8393 6.9088 46 1 7.3840 4.3133 7.8912 47 1 8.9865 4.9228 5.6468 48 1 12.2579 5.5131 5.3694 49 1 5.1863 2.3100 3.0516 50 1 3.3720 2.3202 2.9301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105354519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:40 Heat of formation + Delta-G solvation = 74.321084 kcal Electronic energy + Delta-G solvation = -28681.314715 eV Core-core repulsion = 24746.209631 eV Total energy + Delta-G solvation = -3935.105084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -44.31832 -41.65974 -39.57852 -37.15360 -36.78413 -34.78243 -33.92305 -33.57187 -31.62391 -31.00786 -29.57309 -27.87078 -27.41411 -25.74684 -24.83465 -24.67611 -23.36390 -22.35673 -21.89885 -21.41511 -19.85180 -19.40327 -18.77834 -18.25982 -17.45041 -16.89087 -16.58711 -16.36763 -16.01443 -15.96952 -15.63185 -15.26424 -15.07631 -15.02749 -14.55269 -14.31432 -14.26708 -14.10144 -13.91755 -13.84879 -13.65962 -13.36235 -12.97864 -12.96269 -12.71977 -12.66216 -12.58907 -12.49587 -12.29122 -12.12006 -12.01393 -11.86052 -11.81101 -11.73800 -11.70606 -11.29546 -11.07042 -10.92753 -10.79807 -10.21691 -10.00343 -8.99754 -7.91554 -5.21651 0.56662 1.06599 1.39764 1.46752 1.52835 1.54971 1.60962 1.84845 2.61086 2.75387 3.02227 3.38594 3.43992 3.55877 3.66698 3.72858 3.88089 3.95699 4.08832 4.17456 4.22335 4.23584 4.25299 4.30357 4.32969 4.39236 4.44721 4.51404 4.54512 4.59484 4.66184 4.69728 4.81646 4.88756 4.89761 4.96269 5.05964 5.12155 5.15140 5.20953 5.24417 5.31300 5.32510 5.42286 5.51917 5.53124 5.64062 6.27892 6.40649 6.96336 7.34930 7.51915 8.07198 8.32116 9.32040 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.002235 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.529705 B =12525.002886 C =13324.712025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.094 4.094 5 H 0.117 0.883 6 C -0.110 4.110 7 C -0.156 4.156 8 C 0.546 3.454 9 O -0.579 6.579 10 N -0.643 5.643 11 C 0.093 3.907 12 C 0.111 3.889 13 N -0.277 5.277 14 C -0.016 4.016 15 C -0.035 4.035 16 C 0.234 3.766 17 N -0.740 5.740 18 C -0.241 4.241 19 H 0.086 0.914 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.978 3.022 23 H -0.271 1.271 24 H -0.300 1.300 25 H -0.279 1.279 26 N -0.297 5.297 27 N -0.109 5.109 28 C 0.110 3.890 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.166 0.834 44 H 0.231 0.769 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.370 0.630 48 H 0.249 0.751 49 H 0.118 0.882 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.635 -16.171 -12.552 32.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.115 4.115 5 H 0.135 0.865 6 C -0.147 4.147 7 C -0.214 4.214 8 C 0.338 3.662 9 O -0.457 6.457 10 N -0.379 5.379 11 C -0.031 4.031 12 C 0.009 3.991 13 N -0.071 5.071 14 C -0.167 4.167 15 C -0.173 4.173 16 C 0.107 3.893 17 N -0.382 5.382 18 C -0.373 4.373 19 H 0.104 0.896 20 C -0.271 4.271 21 N -0.624 5.624 22 Si 0.807 3.193 23 H -0.196 1.196 24 H -0.227 1.227 25 H -0.205 1.205 26 N -0.164 5.164 27 N -0.087 5.087 28 C -0.013 4.013 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.183 0.817 44 H 0.247 0.753 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.201 0.799 48 H 0.058 0.942 49 H 0.136 0.864 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.209 -14.560 -13.011 31.887 hybrid contribution 1.778 -0.048 -0.221 1.792 sum -23.432 -14.608 -13.232 30.619 Atomic orbital electron populations 1.21786 0.95656 1.02070 1.01766 1.21566 0.95950 0.94953 1.03277 1.21526 0.90947 0.98970 1.02743 1.21479 0.98067 0.90141 1.01790 0.86529 1.21529 0.95788 1.01873 0.95540 1.21823 0.96053 1.00583 1.02906 1.21054 0.75522 0.89753 0.79901 1.90708 1.55646 1.62036 1.37321 1.49764 1.62547 1.19266 1.06322 1.23569 0.99272 0.89641 0.90633 1.24109 0.96063 0.99996 0.78933 1.47402 1.27462 1.10360 1.21911 1.23756 0.95265 1.01234 0.96439 1.22303 1.02151 0.92193 1.00687 1.19005 0.80429 0.97214 0.92700 1.42524 1.01375 1.63310 1.31033 1.19665 0.85922 1.25658 1.06040 0.89620 1.25642 1.00891 1.01248 0.99358 1.69847 1.23379 1.42341 1.26856 0.85143 0.78398 0.78093 0.77698 1.19623 1.22676 1.20531 1.75061 1.06872 1.19661 1.14813 1.78203 1.19336 1.07983 1.03160 1.23904 1.07400 0.92931 0.77031 0.92503 0.93316 0.92076 0.91225 0.90316 0.90629 0.92649 0.88175 0.92773 0.91750 0.95558 0.91272 0.88735 0.89805 0.81656 0.75278 0.91498 0.95369 0.79907 0.94190 0.86439 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.91 71.98 0.71 -0.24 16 2 C -0.12 -0.66 5.69 30.59 0.17 -0.48 16 3 C -0.10 -0.89 4.66 30.59 0.14 -0.74 16 4 C -0.09 -1.02 2.05 -11.54 -0.02 -1.04 16 5 H 0.12 0.69 7.76 -2.39 -0.02 0.67 16 6 C -0.11 -1.38 5.04 30.60 0.15 -1.22 16 7 C -0.16 -2.29 9.65 71.98 0.69 -1.60 16 8 C 0.55 10.16 6.19 87.66 0.54 10.70 16 9 O -0.58 -16.52 16.73 -3.03 -0.05 -16.57 16 10 N -0.64 -9.43 3.61 -837.09 -3.02 -12.45 16 11 C 0.09 1.65 8.64 86.48 0.75 2.40 16 12 C 0.11 1.50 5.15 46.75 0.24 1.75 16 13 N -0.28 -6.42 3.54 -332.00 -1.18 -7.59 16 14 C -0.02 -0.39 10.72 83.49 0.89 0.51 16 15 C -0.04 -1.23 6.61 41.60 0.28 -0.96 16 16 C 0.23 9.31 6.82 85.63 0.58 9.89 16 17 N -0.74 -38.05 5.59 -347.17 -1.94 -39.99 16 18 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 19 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 21 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 22 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 26 N -0.30 -11.73 12.41 -48.60 -0.60 -12.33 16 27 N -0.11 -3.57 13.16 37.02 0.49 -3.08 16 28 C 0.11 0.79 7.70 86.48 0.67 1.45 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.07 0.37 6.45 -2.39 -0.02 0.36 16 33 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 0.77 6.33 -2.38 -0.02 0.76 16 37 H 0.05 0.94 7.66 -2.39 -0.02 0.92 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.03 0.53 7.43 -2.39 -0.02 0.51 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.17 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.23 3.46 6.72 -2.91 -0.02 3.44 16 45 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.37 20.98 7.66 -92.71 -0.71 20.27 16 48 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.12 0.60 6.31 -2.39 -0.02 0.59 16 50 H 0.14 0.01 8.14 -2.38 -0.02 -0.01 16 Total: -1.00 -82.22 409.75 3.34 -78.88 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.23 Total: 21.84 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 7.11 Total: 3.76 kcal Atomic # 7 Polarization: -130.01 SS G_CDS: -5.97 Total: -135.98 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.05 Total: -16.57 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -82.22 3.34 -78.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.202 kcal (2) G-P(sol) polarization free energy of solvation -82.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds