Wall clock time and date at job start Tue Mar 31 2020 20:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47413 * 65.00479 * 3 2 1 5 5 C 1.52998 * 109.47252 * 59.18753 * 4 3 2 6 6 C 1.53004 * 109.46788 * 185.00060 * 3 2 1 7 7 C 1.50703 * 109.46884 * 173.73047 * 6 3 2 8 8 O 1.21276 * 120.00010 * 354.35889 * 7 6 3 9 9 N 1.34780 * 119.99553 * 174.35399 * 7 6 3 10 10 C 1.47061 * 136.05953 * 359.63423 * 9 7 6 11 11 C 1.53764 * 87.88676 * 152.95990 * 10 9 7 12 12 N 1.46498 * 114.57096 * 272.66121 * 11 10 9 13 13 C 1.35308 * 125.87316 * 8.38868 * 12 11 10 14 14 C 1.35352 * 106.17935 * 179.90179 * 13 12 11 15 15 C 1.50693 * 126.75470 * 180.12670 * 14 13 12 16 16 N 1.46496 * 109.47312 * 95.29902 * 15 14 13 17 17 C 1.36942 * 120.00232 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99398 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00259 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99574 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00346 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47078 * 89.99795 * 21 19 17 23 23 H 1.48498 * 109.47185 * 210.00121 * 21 19 17 24 24 H 1.48504 * 109.46521 * 330.00141 * 21 19 17 25 25 N 1.33773 * 106.49133 * 0.35447 * 14 13 12 26 26 N 1.28632 * 108.88862 * 359.76984 * 25 14 13 27 27 C 1.47066 * 136.05418 * 179.97438 * 9 7 6 28 28 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47110 * 299.99830 * 1 2 3 30 30 H 1.09003 * 109.47287 * 59.99735 * 1 2 3 31 31 H 1.09004 * 109.46624 * 240.00383 * 2 1 3 32 32 H 1.08995 * 109.46942 * 120.00311 * 2 1 3 33 33 H 1.09000 * 109.47705 * 304.99871 * 3 2 1 34 34 H 1.08992 * 109.47538 * 179.19167 * 4 3 2 35 35 H 1.09004 * 109.46840 * 299.19323 * 4 3 2 36 36 H 1.09001 * 109.46992 * 61.07660 * 5 4 3 37 37 H 1.09000 * 109.47583 * 181.07555 * 5 4 3 38 38 H 1.09003 * 109.47598 * 301.08163 * 5 4 3 39 39 H 1.08999 * 109.47518 * 293.73056 * 6 3 2 40 40 H 1.09005 * 109.47313 * 53.73164 * 6 3 2 41 41 H 1.08996 * 113.46848 * 267.68734 * 10 9 7 42 42 H 1.08998 * 113.46731 * 38.13421 * 10 9 7 43 43 H 1.09004 * 114.08619 * 139.78290 * 11 10 9 44 44 H 1.08005 * 126.91064 * 0.02562 * 13 12 11 45 45 H 1.09005 * 109.47204 * 215.29811 * 15 14 13 46 46 H 1.09007 * 109.47150 * 335.29548 * 15 14 13 47 47 H 0.96998 * 119.99867 * 359.97438 * 16 15 14 48 48 H 0.97008 * 119.99596 * 179.97438 * 20 19 17 49 49 H 1.09003 * 113.47142 * 321.86869 * 27 9 7 50 50 H 1.09003 * 113.46562 * 92.25045 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6354 2.1265 1.3074 5 6 2.2288 1.3582 2.4899 6 6 3.5648 1.4442 -0.1257 7 6 4.0544 2.8611 -0.2806 8 8 3.2582 3.7690 -0.3923 9 7 5.3772 3.1191 -0.2948 10 6 6.6118 2.3276 -0.1846 11 6 7.3164 3.4173 -1.0096 12 7 7.2287 3.2351 -2.4606 13 6 6.4697 2.3151 -3.0997 14 6 6.6877 2.4998 -4.4228 15 6 6.0693 1.7220 -5.5557 16 7 4.8916 2.4371 -6.0534 17 6 4.1618 1.9172 -7.0889 18 1 4.4548 0.9801 -7.5389 19 6 3.0456 2.5945 -7.5602 20 7 2.6884 3.7363 -7.0113 21 14 2.0496 1.8850 -8.9723 22 1 0.9809 1.0068 -8.4320 23 1 1.4355 2.9911 -9.7498 24 1 2.9408 1.0929 -9.8575 25 7 7.5639 3.5053 -4.5265 26 7 7.8646 3.9191 -3.3463 27 6 6.2211 4.3169 -0.4212 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6054 1.9816 -0.8418 34 1 2.0110 3.1496 1.3135 35 1 0.5485 2.1379 1.3902 36 1 3.3164 1.3630 2.4173 37 1 1.9248 1.8344 3.4220 38 1 1.8681 0.3297 2.4729 39 1 4.0038 1.0039 0.7695 40 1 3.8582 0.8610 -0.9987 41 1 6.9856 2.2463 0.8360 42 1 6.5566 1.3645 -0.6920 43 1 8.3230 3.6548 -0.6653 44 1 5.8192 1.5823 -2.6456 45 1 6.7958 1.6136 -6.3611 46 1 5.7719 0.7356 -5.1995 47 1 4.6284 3.2785 -5.6490 48 1 1.9085 4.2098 -7.3409 49 1 5.8331 5.0484 -1.1302 50 1 6.4909 4.7609 0.5370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105354940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:07 Heat of formation + Delta-G solvation = 81.819666 kcal Electronic energy + Delta-G solvation = -29761.714181 eV Core-core repulsion = 25826.934259 eV Total energy + Delta-G solvation = -3934.779921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.37192 -41.58043 -39.74412 -37.75177 -36.82625 -34.66532 -33.55749 -32.19485 -31.73136 -31.58402 -29.81473 -27.81238 -27.21537 -26.02624 -24.84670 -24.74927 -24.26193 -22.41481 -21.90299 -20.30706 -19.74064 -19.32382 -18.29585 -18.15080 -17.42309 -17.06826 -16.83775 -16.61410 -16.35348 -15.98175 -15.82751 -15.50864 -15.14970 -14.86681 -14.55880 -14.32684 -14.23502 -13.88381 -13.75788 -13.71256 -13.55543 -13.31195 -12.99823 -12.84670 -12.82588 -12.80415 -12.60829 -12.34187 -12.25141 -12.11491 -12.00221 -11.90345 -11.85554 -11.45153 -11.36784 -11.23235 -11.07998 -10.98336 -10.74603 -10.27295 -9.90989 -9.05523 -7.95420 -5.26914 0.52747 1.28358 1.42096 1.48466 1.50069 1.57620 1.59006 1.68156 2.57422 2.78521 3.13479 3.36345 3.45421 3.67982 3.76653 3.82525 3.91945 3.99124 4.06870 4.12663 4.18670 4.29795 4.36330 4.39604 4.41628 4.46939 4.55856 4.56755 4.58104 4.61410 4.63210 4.69175 4.81445 4.84831 4.91959 4.97505 5.08517 5.09855 5.14534 5.15085 5.29222 5.32578 5.38194 5.46337 5.48103 5.66484 5.66892 6.22890 6.55303 7.08846 7.29347 7.47197 8.00649 8.26451 9.28633 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007657 B = 0.004041 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3655.925679 B = 6927.858320 C = 9765.252876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.076 4.076 4 C -0.122 4.122 5 C -0.148 4.148 6 C -0.125 4.125 7 C 0.536 3.464 8 O -0.585 6.585 9 N -0.662 5.662 10 C 0.114 3.886 11 C 0.091 3.909 12 N -0.266 5.266 13 C -0.015 4.015 14 C -0.037 4.037 15 C 0.235 3.765 16 N -0.740 5.740 17 C -0.244 4.244 18 H 0.088 0.912 19 C -0.079 4.079 20 N -0.976 5.976 21 Si 0.980 3.020 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.263 1.263 25 N -0.298 5.298 26 N -0.102 5.102 27 C 0.092 3.908 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.171 0.829 42 H 0.108 0.892 43 H 0.187 0.813 44 H 0.211 0.789 45 H 0.032 0.968 46 H 0.063 0.937 47 H 0.367 0.633 48 H 0.249 0.751 49 H 0.042 0.958 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 -11.070 27.648 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.095 4.095 4 C -0.159 4.159 5 C -0.205 4.205 6 C -0.165 4.165 7 C 0.329 3.671 8 O -0.464 6.464 9 N -0.399 5.399 10 C -0.008 4.008 11 C -0.011 4.011 12 N -0.060 5.060 13 C -0.166 4.166 14 C -0.176 4.176 15 C 0.107 3.893 16 N -0.383 5.383 17 C -0.375 4.375 18 H 0.106 0.894 19 C -0.270 4.270 20 N -0.627 5.627 21 Si 0.808 3.192 22 H -0.210 1.210 23 H -0.227 1.227 24 H -0.187 1.187 25 N -0.165 5.165 26 N -0.081 5.081 27 C -0.031 4.031 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.123 0.877 41 H 0.189 0.811 42 H 0.126 0.874 43 H 0.204 0.796 44 H 0.227 0.773 45 H 0.050 0.950 46 H 0.081 0.919 47 H 0.197 0.803 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.378 -9.629 27.226 30.069 hybrid contribution -1.858 0.236 -1.002 2.125 sum 6.520 -9.393 26.224 28.608 Atomic orbital electron populations 1.21822 0.96197 1.02001 1.01307 1.21603 0.95909 0.94531 1.03195 1.20927 0.93521 0.97151 0.97898 1.21554 1.00634 0.99058 0.94688 1.21864 1.01181 1.00825 0.96609 1.21835 0.97088 0.91290 1.06244 1.20992 0.79495 0.92455 0.74195 1.90724 1.54661 1.49610 1.51415 1.49899 1.04362 1.12374 1.73245 1.23856 0.78364 0.95602 1.03008 1.23444 1.03971 1.01067 0.72573 1.47159 1.28202 1.21714 1.08924 1.23428 1.01397 0.99652 0.92162 1.22279 1.00556 0.99068 0.95675 1.18986 0.87262 0.92852 0.90156 1.42539 1.29684 1.25736 1.40327 1.19726 1.05174 1.04197 1.08389 0.89429 1.25686 1.00589 0.97673 1.03077 1.69894 1.28594 1.18139 1.46039 0.85047 0.78617 0.76830 0.78710 1.20958 1.22657 1.18746 1.75030 1.15156 1.11635 1.14652 1.78142 1.18952 1.18576 0.92425 1.23596 0.86590 0.90299 1.02653 0.91520 0.92184 0.94710 0.91882 0.89008 0.94595 0.93848 0.92473 0.91792 0.92819 0.90899 0.84972 0.87718 0.81138 0.87367 0.79620 0.77277 0.95041 0.91935 0.80257 0.94217 0.93898 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.67 71.98 0.70 -2.06 16 2 C -0.12 -1.86 5.17 30.59 0.16 -1.70 16 3 C -0.08 -1.61 1.80 -10.79 -0.02 -1.63 16 4 C -0.12 -2.47 5.21 30.59 0.16 -2.31 16 5 C -0.15 -1.85 9.23 71.98 0.66 -1.19 16 6 C -0.13 -2.09 4.82 29.85 0.14 -1.95 16 7 C 0.54 13.07 7.69 87.66 0.67 13.75 16 8 O -0.58 -21.43 15.05 -3.02 -0.05 -21.48 16 9 N -0.66 -10.95 3.43 -857.92 -2.94 -13.90 16 10 C 0.11 0.55 7.60 83.27 0.63 1.18 16 11 C 0.09 1.05 5.36 45.55 0.24 1.29 16 12 N -0.27 -6.70 3.56 -326.18 -1.16 -7.86 16 13 C -0.01 -0.42 10.40 83.49 0.87 0.45 16 14 C -0.04 -1.45 6.61 41.59 0.28 -1.17 16 15 C 0.24 10.10 6.82 85.63 0.58 10.69 16 16 N -0.74 -40.72 5.59 -347.18 -1.94 -42.66 16 17 C -0.24 -14.14 9.99 84.03 0.84 -13.30 16 18 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 19 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 20 N -0.98 -64.17 13.06 21.65 0.28 -63.89 16 21 Si 0.98 47.82 29.55 68.60 2.03 49.85 16 22 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 25 N -0.30 -12.48 12.41 -48.60 -0.60 -13.08 16 26 N -0.10 -3.53 13.16 37.02 0.49 -3.04 16 27 C 0.09 1.42 8.42 83.17 0.70 2.12 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.99 6.58 -2.39 -0.02 0.98 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.00 6.13 -2.39 -0.01 0.99 16 33 H 0.04 1.10 7.82 -2.39 -0.02 1.08 16 34 H 0.04 1.14 6.26 -2.39 -0.01 1.13 16 35 H 0.06 1.19 6.60 -2.39 -0.02 1.17 16 36 H 0.06 0.63 6.37 -2.39 -0.02 0.61 16 37 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.72 6.25 -2.39 -0.01 0.70 16 39 H 0.13 1.14 6.16 -2.39 -0.01 1.13 16 40 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.17 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.11 0.34 7.00 -2.39 -0.02 0.32 16 43 H 0.19 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.21 4.57 7.22 -2.91 -0.02 4.55 16 45 H 0.03 1.39 8.14 -2.38 -0.02 1.38 16 46 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 47 H 0.37 22.53 7.66 -92.71 -0.71 21.82 16 48 H 0.25 15.89 8.31 -92.70 -0.77 15.12 16 49 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -92.89 401.19 3.43 -89.45 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.24 Total: 26.71 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 7.09 Total: -0.11 kcal Atomic # 7 Polarization: -138.56 SS G_CDS: -5.88 Total: -144.43 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -92.89 3.43 -89.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.275 kcal (2) G-P(sol) polarization free energy of solvation -92.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds