Wall clock time and date at job start Tue Mar 31 2020 20:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46879 * 2 1 4 4 C 1.52996 * 109.47304 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47249 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47249 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47121 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00334 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00127 * 179.97438 * 7 6 5 10 10 C 1.47576 * 134.49542 * 180.02562 * 9 7 6 11 11 C 1.53942 * 86.11852 * 155.35966 * 10 9 7 12 12 N 1.46491 * 113.74194 * 137.95195 * 11 10 9 13 13 C 1.35317 * 125.87029 * 277.21898 * 12 11 10 14 14 C 1.35352 * 106.17693 * 180.18381 * 13 12 11 15 15 C 1.50700 * 126.75361 * 179.84844 * 14 13 12 16 16 N 1.46498 * 109.46769 * 94.71485 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 N 1.33772 * 106.49634 * 359.59642 * 14 13 12 26 26 N 1.28636 * 108.88627 * 0.25926 * 25 14 13 27 27 C 1.47807 * 134.45239 * 359.87039 * 9 7 6 28 28 H 1.08998 * 109.47399 * 60.00016 * 1 2 3 29 29 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47131 * 299.99454 * 1 2 3 31 31 H 1.09002 * 109.47131 * 240.00546 * 2 1 3 32 32 H 1.08998 * 109.47399 * 119.99984 * 2 1 3 33 33 H 1.09003 * 109.47314 * 59.99777 * 3 2 1 34 34 H 1.09003 * 109.47271 * 300.00623 * 3 2 1 35 35 H 1.08996 * 109.47120 * 59.99833 * 4 3 2 36 36 H 1.09006 * 109.46629 * 299.99906 * 4 3 2 37 37 H 1.08992 * 109.47141 * 59.99345 * 5 4 3 38 38 H 1.09009 * 109.46463 * 299.99462 * 5 4 3 39 39 H 1.08996 * 109.47120 * 59.99486 * 6 5 4 40 40 H 1.08998 * 109.46940 * 299.99615 * 6 5 4 41 41 H 1.09000 * 113.76645 * 41.05224 * 10 9 7 42 42 H 1.09000 * 113.87057 * 269.67450 * 10 9 7 43 43 H 1.09000 * 113.74068 * 269.15192 * 11 10 9 44 44 H 1.08002 * 126.91295 * 0.03783 * 13 12 11 45 45 H 1.09004 * 109.47210 * 334.71843 * 15 14 13 46 46 H 1.08994 * 109.47121 * 214.71813 * 15 14 13 47 47 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 48 48 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 49 49 H 1.09002 * 113.77031 * 90.37650 * 27 9 7 50 50 H 1.08999 * 113.84046 * 318.91260 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0798 2.8852 0.0000 6 6 5.6098 2.8853 0.0000 7 6 6.1120 4.3061 0.0000 8 8 5.3239 5.2279 -0.0005 9 7 7.4371 4.5525 0.0005 10 6 8.2616 5.7766 0.0012 11 6 9.3610 4.9101 0.6416 12 7 10.6989 5.1589 0.0993 13 6 11.2072 4.6229 -1.0344 14 6 12.4623 5.1151 -1.1546 15 6 13.4471 4.8152 -2.2552 16 7 13.3554 5.8503 -3.2878 17 6 14.1647 5.7905 -4.3909 18 1 14.8674 4.9779 -4.5016 19 6 14.0820 6.7744 -5.3666 20 7 14.8594 6.7167 -6.4269 21 14 12.8670 8.1802 -5.1746 22 1 13.5180 9.3018 -4.4510 23 1 12.4304 8.6438 -6.5161 24 1 11.6867 7.7129 -4.4040 25 7 12.6547 5.9247 -0.1071 26 7 11.5913 5.9289 0.6167 27 6 8.6477 3.7045 0.0035 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 3.9329 0.9290 -0.8908 36 1 3.9336 0.9287 0.8892 37 1 3.7168 3.3985 0.8903 38 1 3.7161 3.3995 -0.8897 39 1 5.9732 2.3719 -0.8901 40 1 5.9731 2.3712 0.8898 41 1 7.8828 6.5610 0.6564 42 1 8.5130 6.1395 -0.9954 43 1 9.3381 4.9069 1.7314 44 1 10.7120 3.9379 -1.7068 45 1 13.2177 3.8437 -2.6931 46 1 14.4567 4.7995 -1.8449 47 1 12.7245 6.5803 -3.1882 48 1 14.8014 7.4040 -7.1090 49 1 9.0121 3.4554 -0.9931 50 1 8.5768 2.8378 0.6608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105369839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:13 Heat of formation + Delta-G solvation = 96.617754 kcal Electronic energy + Delta-G solvation = -27553.041723 eV Core-core repulsion = 23618.903495 eV Total energy + Delta-G solvation = -3934.138228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.29490 -40.83852 -38.65657 -36.81325 -35.24207 -33.89686 -33.62257 -31.95812 -30.52364 -30.39464 -28.95668 -27.16280 -26.28455 -25.31329 -23.86265 -22.48379 -21.82426 -21.47303 -21.16110 -20.77904 -19.46762 -18.26371 -17.66965 -17.37336 -16.67241 -16.52264 -16.00830 -15.72717 -15.11576 -14.62804 -14.55658 -14.46096 -14.17392 -14.07295 -13.94666 -13.45004 -13.33030 -13.27633 -13.03057 -12.88923 -12.77225 -12.70652 -12.25681 -11.99499 -11.94258 -11.86773 -11.62102 -11.42442 -11.22487 -11.15221 -11.11578 -10.95912 -10.89798 -10.68129 -10.30651 -10.18907 -10.03721 -9.60745 -9.41144 -9.10220 -8.91834 -7.25629 -5.77391 -3.13387 1.53840 1.78005 2.05218 2.50299 2.68086 3.34625 3.38420 3.43551 3.47206 3.59971 4.05542 4.14936 4.20715 4.38323 4.48521 4.52152 4.57769 4.59976 4.62325 4.67634 4.70801 4.85636 4.88679 4.97340 5.02260 5.07882 5.09434 5.18809 5.22812 5.27365 5.30128 5.35894 5.45725 5.50988 5.51485 5.61383 5.63055 5.64662 5.69818 5.80116 5.86363 5.93015 6.18396 6.50404 6.51590 6.62809 6.98328 7.59555 7.96729 8.41107 8.61216 9.19047 9.91642 10.11176 11.40608 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.001829 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.814350 B =15307.679021 C =16122.288081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.106 4.106 6 C -0.134 4.134 7 C 0.542 3.458 8 O -0.530 6.530 9 N -0.647 5.647 10 C 0.102 3.898 11 C 0.112 3.888 12 N -0.295 5.295 13 C -0.045 4.045 14 C -0.007 4.007 15 C 0.237 3.763 16 N -0.750 5.750 17 C -0.245 4.245 18 H 0.094 0.906 19 C 0.009 3.991 20 N -0.932 5.932 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.280 1.280 25 N -0.251 5.251 26 N -0.089 5.089 27 C 0.100 3.900 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.146 0.854 44 H 0.190 0.810 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.362 0.638 48 H 0.260 0.740 49 H 0.104 0.896 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.795 -15.446 17.527 34.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.144 4.144 6 C -0.174 4.174 7 C 0.333 3.667 8 O -0.405 6.405 9 N -0.385 5.385 10 C -0.021 4.021 11 C 0.008 3.992 12 N -0.089 5.089 13 C -0.195 4.195 14 C -0.144 4.144 15 C 0.108 3.892 16 N -0.396 5.396 17 C -0.375 4.375 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.580 5.580 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.207 1.207 25 N -0.118 5.118 26 N -0.067 5.067 27 C -0.024 4.024 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.164 0.836 44 H 0.207 0.793 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.195 0.805 48 H 0.070 0.930 49 H 0.122 0.878 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -25.962 -14.118 18.535 34.884 hybrid contribution -1.122 0.377 -0.881 1.476 sum -27.084 -13.741 17.654 35.128 Atomic orbital electron populations 1.21784 0.95920 1.01587 1.01862 1.21542 0.95893 0.96903 1.01974 1.21620 0.95145 0.96783 1.02338 1.21620 0.95756 0.96227 1.02176 1.21388 0.92264 0.96966 1.03789 1.21678 0.98263 0.92784 1.04663 1.20522 0.79194 0.92128 0.74886 1.90751 1.53563 1.46926 1.49236 1.49783 1.04054 1.09649 1.74978 1.23591 0.85869 0.90292 1.02356 1.23711 0.76506 0.97656 1.01285 1.47153 1.12847 1.31363 1.17568 1.23369 0.96738 1.06527 0.92900 1.22562 0.95465 0.98347 0.98072 1.18931 0.93649 0.92678 0.83897 1.42654 1.46881 1.28022 1.22027 1.19034 1.14147 1.08920 0.95359 0.88851 1.24620 0.99035 0.98410 0.96682 1.69692 1.41366 1.35994 1.10902 0.86568 0.81593 0.83685 0.76747 1.20928 1.21706 1.20658 1.75144 1.15477 1.17172 1.04049 1.78324 0.94186 1.12498 1.21700 1.23690 0.81359 0.94828 1.02548 0.92730 0.92816 0.92768 0.92037 0.92095 0.91919 0.91870 0.91797 0.91884 0.91111 0.91067 0.88600 0.88698 0.88081 0.88424 0.83599 0.79261 0.93552 0.93363 0.80505 0.93005 0.87786 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.13 -0.58 5.93 -26.73 -0.16 -0.74 16 3 C -0.12 -0.61 5.21 -26.73 -0.14 -0.75 16 4 C -0.12 -0.56 5.21 -26.73 -0.14 -0.69 16 5 C -0.11 -0.66 4.50 -26.73 -0.12 -0.78 16 6 C -0.13 -0.72 5.45 -27.89 -0.15 -0.87 16 7 C 0.54 4.87 8.06 -10.98 -0.09 4.79 16 8 O -0.53 -7.06 16.71 5.56 0.09 -6.96 16 9 N -0.65 -4.81 3.61 -178.36 -0.64 -5.45 16 10 C 0.10 0.85 8.64 -2.97 -0.03 0.82 16 11 C 0.11 0.80 5.13 -70.16 -0.36 0.44 16 12 N -0.29 -3.41 3.54 -56.32 -0.20 -3.61 16 13 C -0.05 -0.57 10.72 -17.04 -0.18 -0.75 16 14 C -0.01 -0.12 6.61 -82.78 -0.55 -0.66 16 15 C 0.24 4.55 6.82 -5.19 -0.04 4.51 16 16 N -0.75 -17.99 5.40 -61.09 -0.33 -18.32 16 17 C -0.25 -6.89 10.47 -15.06 -0.16 -7.05 16 18 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 19 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 21 Si 0.88 22.61 27.74 -169.99 -4.71 17.90 16 22 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.28 -6.81 6.52 56.52 0.37 -6.45 16 25 N -0.25 -4.61 12.41 33.29 0.41 -4.19 16 26 N -0.09 -1.38 13.17 60.35 0.79 -0.59 16 27 C 0.10 0.47 8.00 -2.85 -0.02 0.44 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.07 0.54 8.10 -51.92 -0.42 0.12 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.15 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.19 1.66 6.74 -52.49 -0.35 1.31 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.36 8.81 5.52 -40.82 -0.23 8.58 16 48 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 49 H 0.10 0.43 6.31 -51.93 -0.33 0.11 16 50 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 413.01 15.07 6.22 6.22 Total: -1.00 -36.81 413.01 -7.97 -44.78 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.53 Total: 0.07 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.86 Total: -1.45 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.81 Total: -60.56 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: 0.09 Total: -6.96 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.81 -7.97 -44.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105369839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.402 kcal (2) G-P(sol) polarization free energy of solvation -36.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds