Wall clock time and date at job start Tue Mar 31 2020 20:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46879 * 2 1 4 4 C 1.52996 * 109.47304 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47249 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47249 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47121 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00334 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00127 * 179.97438 * 7 6 5 10 10 C 1.47576 * 134.49542 * 180.02562 * 9 7 6 11 11 C 1.53942 * 86.11852 * 155.35966 * 10 9 7 12 12 N 1.46491 * 113.74194 * 137.95195 * 11 10 9 13 13 C 1.35317 * 125.87029 * 277.21898 * 12 11 10 14 14 C 1.35352 * 106.17693 * 180.18381 * 13 12 11 15 15 C 1.50700 * 126.75361 * 179.84844 * 14 13 12 16 16 N 1.46498 * 109.46769 * 94.71485 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 N 1.33772 * 106.49634 * 359.59642 * 14 13 12 26 26 N 1.28636 * 108.88627 * 0.25926 * 25 14 13 27 27 C 1.47807 * 134.45239 * 359.87039 * 9 7 6 28 28 H 1.08998 * 109.47399 * 60.00016 * 1 2 3 29 29 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47131 * 299.99454 * 1 2 3 31 31 H 1.09002 * 109.47131 * 240.00546 * 2 1 3 32 32 H 1.08998 * 109.47399 * 119.99984 * 2 1 3 33 33 H 1.09003 * 109.47314 * 59.99777 * 3 2 1 34 34 H 1.09003 * 109.47271 * 300.00623 * 3 2 1 35 35 H 1.08996 * 109.47120 * 59.99833 * 4 3 2 36 36 H 1.09006 * 109.46629 * 299.99906 * 4 3 2 37 37 H 1.08992 * 109.47141 * 59.99345 * 5 4 3 38 38 H 1.09009 * 109.46463 * 299.99462 * 5 4 3 39 39 H 1.08996 * 109.47120 * 59.99486 * 6 5 4 40 40 H 1.08998 * 109.46940 * 299.99615 * 6 5 4 41 41 H 1.09000 * 113.76645 * 41.05224 * 10 9 7 42 42 H 1.09000 * 113.87057 * 269.67450 * 10 9 7 43 43 H 1.09000 * 113.74068 * 269.15192 * 11 10 9 44 44 H 1.08002 * 126.91295 * 0.03783 * 13 12 11 45 45 H 1.09004 * 109.47210 * 334.71843 * 15 14 13 46 46 H 1.08994 * 109.47121 * 214.71813 * 15 14 13 47 47 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 48 48 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 49 49 H 1.09002 * 113.77031 * 90.37650 * 27 9 7 50 50 H 1.08999 * 113.84046 * 318.91260 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0798 2.8852 0.0000 6 6 5.6098 2.8853 0.0000 7 6 6.1120 4.3061 0.0000 8 8 5.3239 5.2279 -0.0005 9 7 7.4371 4.5525 0.0005 10 6 8.2616 5.7766 0.0012 11 6 9.3610 4.9101 0.6416 12 7 10.6989 5.1589 0.0993 13 6 11.2072 4.6229 -1.0344 14 6 12.4623 5.1151 -1.1546 15 6 13.4471 4.8152 -2.2552 16 7 13.3554 5.8503 -3.2878 17 6 14.1647 5.7905 -4.3909 18 1 14.8674 4.9779 -4.5016 19 6 14.0820 6.7744 -5.3666 20 7 14.8594 6.7167 -6.4269 21 14 12.8670 8.1802 -5.1746 22 1 13.5180 9.3018 -4.4510 23 1 12.4304 8.6438 -6.5161 24 1 11.6867 7.7129 -4.4040 25 7 12.6547 5.9247 -0.1071 26 7 11.5913 5.9289 0.6167 27 6 8.6477 3.7045 0.0035 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 3.9329 0.9290 -0.8908 36 1 3.9336 0.9287 0.8892 37 1 3.7168 3.3985 0.8903 38 1 3.7161 3.3995 -0.8897 39 1 5.9732 2.3719 -0.8901 40 1 5.9731 2.3712 0.8898 41 1 7.8828 6.5610 0.6564 42 1 8.5130 6.1395 -0.9954 43 1 9.3381 4.9069 1.7314 44 1 10.7120 3.9379 -1.7068 45 1 13.2177 3.8437 -2.6931 46 1 14.4567 4.7995 -1.8449 47 1 12.7245 6.5803 -3.1882 48 1 14.8014 7.4040 -7.1090 49 1 9.0121 3.4554 -0.9931 50 1 8.5768 2.8378 0.6608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105369839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:12 Heat of formation + Delta-G solvation = 71.263583 kcal Electronic energy + Delta-G solvation = -27554.141163 eV Core-core repulsion = 23618.903495 eV Total energy + Delta-G solvation = -3935.237668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.35619 -41.47764 -39.33646 -37.23514 -36.97301 -34.82005 -34.29080 -33.72505 -31.98656 -31.11366 -29.49200 -28.05654 -27.48847 -25.90954 -24.61305 -24.33572 -22.49254 -22.20940 -21.84551 -21.64471 -20.05020 -19.90399 -18.72069 -18.12307 -17.48213 -17.06367 -16.82702 -16.50599 -16.32674 -16.10391 -15.76734 -15.21026 -14.95764 -14.85021 -14.76702 -14.52257 -14.34493 -13.97575 -13.93902 -13.78418 -13.69810 -13.43887 -13.24128 -13.14507 -12.91923 -12.69254 -12.51694 -12.32689 -12.31791 -12.13194 -11.86966 -11.81544 -11.79580 -11.61636 -11.52141 -11.33092 -11.12387 -11.02050 -10.94141 -10.26892 -10.01128 -9.30665 -8.02113 -5.34852 0.53352 1.05320 1.33962 1.39296 1.41607 1.43278 1.46692 1.84686 2.47075 2.77226 3.04841 3.29283 3.39656 3.59316 3.67398 3.80221 3.83540 3.94340 4.00356 4.07757 4.15931 4.20983 4.22538 4.32251 4.32795 4.40539 4.48058 4.50808 4.56114 4.65088 4.66963 4.74307 4.84598 4.86428 4.89021 4.98419 5.10058 5.11728 5.14382 5.16876 5.22804 5.27400 5.41117 5.49369 5.55139 5.61191 5.77026 6.21546 6.41356 6.96893 7.06711 7.48049 7.82100 8.00771 9.18984 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.001829 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.814350 B =15307.679021 C =16122.288081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.112 4.112 5 C -0.105 4.105 6 C -0.125 4.125 7 C 0.536 3.464 8 O -0.585 6.585 9 N -0.645 5.645 10 C 0.093 3.907 11 C 0.109 3.891 12 N -0.278 5.278 13 C -0.013 4.013 14 C -0.041 4.041 15 C 0.238 3.762 16 N -0.754 5.754 17 C -0.229 4.229 18 H 0.070 0.930 19 C -0.056 4.056 20 N -0.979 5.979 21 Si 0.947 3.053 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.259 1.259 25 N -0.295 5.295 26 N -0.107 5.107 27 C 0.111 3.889 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.166 0.834 44 H 0.234 0.766 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.362 0.638 48 H 0.258 0.742 49 H 0.119 0.881 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.622 -17.794 18.895 37.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C -0.161 4.161 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.164 4.164 7 C 0.329 3.671 8 O -0.465 6.465 9 N -0.381 5.381 10 C -0.032 4.032 11 C 0.007 3.993 12 N -0.072 5.072 13 C -0.164 4.164 14 C -0.179 4.179 15 C 0.111 3.889 16 N -0.399 5.399 17 C -0.359 4.359 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.630 5.630 21 Si 0.775 3.225 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.184 1.184 25 N -0.162 5.162 26 N -0.085 5.085 27 C -0.011 4.011 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.183 0.817 44 H 0.250 0.750 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.194 0.806 48 H 0.067 0.933 49 H 0.137 0.863 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.796 -16.506 19.974 38.001 hybrid contribution -0.587 1.038 -1.220 1.706 sum -28.383 -15.467 18.754 37.371 Atomic orbital electron populations 1.21807 0.96122 1.01824 1.01637 1.21532 0.95763 0.96492 1.02345 1.21629 0.95828 0.97020 1.01623 1.21565 0.95103 0.95120 1.03199 1.21334 0.93365 0.97616 1.01959 1.21728 0.97151 0.90496 1.07060 1.21247 0.79118 0.93062 0.73714 1.90731 1.55081 1.48783 1.51875 1.49808 1.04347 1.09961 1.73988 1.23569 0.86822 0.91055 1.01720 1.24146 0.73838 0.98883 1.02438 1.47446 1.13438 1.29451 1.16842 1.23824 0.95002 1.05013 0.92598 1.22269 0.97014 1.00596 0.98011 1.18949 0.94048 0.92270 0.83659 1.42705 1.46042 1.29244 1.21951 1.19067 1.13224 1.07484 0.96159 0.91222 1.25330 1.01364 1.01298 0.96766 1.69846 1.43730 1.37237 1.12139 0.85540 0.80067 0.80251 0.76629 1.21501 1.21843 1.18358 1.75082 1.17275 1.18660 1.05222 1.78235 0.94473 1.13762 1.22034 1.23962 0.78584 0.94543 1.03999 0.93099 0.92340 0.92905 0.91775 0.91521 0.92507 0.92834 0.90930 0.90516 0.92757 0.93293 0.86383 0.85672 0.88788 0.89691 0.81653 0.74988 0.90998 0.94804 0.80614 0.93322 0.86332 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -0.94 5.93 30.60 0.18 -0.76 16 3 C -0.12 -1.10 5.21 30.59 0.16 -0.94 16 4 C -0.11 -0.77 5.21 30.59 0.16 -0.61 16 5 C -0.10 -1.14 4.50 30.59 0.14 -1.00 16 6 C -0.13 -0.89 5.45 29.85 0.16 -0.73 16 7 C 0.54 8.46 8.06 87.65 0.71 9.16 16 8 O -0.59 -15.52 16.71 -3.03 -0.05 -15.57 16 9 N -0.64 -7.44 3.61 -836.60 -3.02 -10.46 16 10 C 0.09 1.33 8.64 86.49 0.75 2.08 16 11 C 0.11 1.13 5.13 46.74 0.24 1.37 16 12 N -0.28 -5.51 3.54 -332.09 -1.18 -6.68 16 13 C -0.01 -0.28 10.72 83.49 0.89 0.62 16 14 C -0.04 -1.29 6.61 41.60 0.28 -1.01 16 15 C 0.24 8.82 6.82 85.63 0.58 9.40 16 16 N -0.75 -35.38 5.40 -347.18 -1.87 -37.25 16 17 C -0.23 -12.89 10.47 84.03 0.88 -12.01 16 18 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 19 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 20 N -0.98 -62.41 13.97 21.65 0.30 -62.11 16 21 Si 0.95 46.74 27.74 68.60 1.90 48.64 16 22 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.26 -11.68 6.52 99.48 0.65 -11.03 16 25 N -0.30 -10.56 12.41 -48.60 -0.60 -11.16 16 26 N -0.11 -3.14 13.17 37.02 0.49 -2.65 16 27 C 0.11 0.43 8.00 86.44 0.69 1.12 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 38 H 0.05 0.74 8.10 -2.38 -0.02 0.72 16 39 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 43 H 0.17 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.23 2.66 6.74 -2.91 -0.02 2.64 16 45 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 46 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.36 16.97 5.52 -92.71 -0.51 16.46 16 48 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 49 H 0.12 0.21 6.31 -2.39 -0.02 0.19 16 50 H 0.15 -0.49 8.14 -2.39 -0.02 -0.51 16 Total: -1.00 -84.17 413.01 3.32 -80.85 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.35 Total: 13.06 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 7.00 Total: 3.34 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.89 Total: -130.32 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.05 Total: -15.57 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.90 Total: 48.64 kcal Total: -84.17 3.32 -80.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105369839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.116 kcal (2) G-P(sol) polarization free energy of solvation -84.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds