Wall clock time and date at job start Tue Mar 31 2020 20:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47110 * 2 1 4 4 C 1.36598 * 126.58286 * 270.02581 * 3 2 1 5 5 C 1.47517 * 125.76850 * 0.04071 * 4 3 2 6 6 O 1.21598 * 120.00340 * 359.71350 * 5 4 3 7 7 N 1.34777 * 119.99790 * 179.71470 * 5 4 3 8 8 C 1.48315 * 127.77039 * 179.97438 * 7 5 4 9 9 C 1.54385 * 104.53750 * 219.53004 * 8 7 5 10 10 H 1.08997 * 110.34548 * 95.18221 * 9 8 7 11 11 C 1.53004 * 110.34091 * 217.33303 * 9 8 7 12 12 N 1.46499 * 109.47198 * 292.12406 * 11 9 8 13 13 C 1.36939 * 119.99933 * 180.27608 * 12 11 9 14 14 H 1.08001 * 119.99700 * 359.72658 * 13 12 11 15 15 C 1.38810 * 120.00095 * 179.71972 * 13 12 11 16 16 N 1.31624 * 119.99740 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00044 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47144 * 90.00258 * 17 15 13 19 19 H 1.48500 * 109.47140 * 210.00775 * 17 15 13 20 20 H 1.48502 * 109.46967 * 330.00206 * 17 15 13 21 21 C 1.54283 * 105.05420 * 336.25517 * 9 8 7 22 22 H 1.08995 * 110.34709 * 240.97088 * 21 9 8 23 23 C 1.53002 * 110.34028 * 118.81593 * 21 9 8 24 24 C 1.48139 * 127.84024 * 0.02562 * 7 5 4 25 25 N 1.34399 * 108.45760 * 179.77475 * 4 3 2 26 26 N 1.28759 * 109.52502 * 0.22746 * 25 4 3 27 27 N 1.34820 * 126.57652 * 90.19594 * 3 2 1 28 28 C 1.46497 * 126.59706 * 359.97438 * 27 3 2 29 29 C 1.52999 * 109.47361 * 270.24730 * 28 27 3 30 30 H 1.09002 * 109.47344 * 59.99888 * 1 2 3 31 31 H 1.08999 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46945 * 300.00009 * 1 2 3 33 33 H 1.08998 * 109.46973 * 240.00528 * 2 1 3 34 34 H 1.09002 * 109.47344 * 120.00112 * 2 1 3 35 35 H 1.08998 * 110.38541 * 100.79826 * 8 7 5 36 36 H 1.09004 * 110.50344 * 338.31646 * 8 7 5 37 37 H 1.09009 * 109.46730 * 172.12193 * 11 9 8 38 38 H 1.08998 * 109.46846 * 52.12738 * 11 9 8 39 39 H 0.97001 * 119.99790 * 359.97438 * 12 11 9 40 40 H 0.96998 * 119.99409 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.47026 * 60.00792 * 23 21 9 42 42 H 1.09009 * 109.47071 * 179.97438 * 23 21 9 43 43 H 1.08992 * 109.47525 * 300.00076 * 23 21 9 44 44 H 1.09004 * 110.40600 * 21.62261 * 24 7 5 45 45 H 1.09000 * 110.51348 * 259.24364 * 24 7 5 46 46 H 1.09003 * 109.46866 * 30.25069 * 28 27 3 47 47 H 1.08998 * 109.47229 * 150.24511 * 28 27 3 48 48 H 1.09003 * 109.47108 * 179.97438 * 29 28 27 49 49 H 1.09002 * 109.46892 * 299.99941 * 29 28 27 50 50 H 1.09001 * 109.46975 * 60.00223 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3032 2.1885 -1.0969 5 6 2.1527 1.7674 -2.5026 6 8 1.7609 0.6460 -2.7628 7 7 2.4496 2.6255 -3.4986 8 6 2.3630 2.3863 -4.9598 9 6 3.6118 3.0832 -5.5412 10 1 4.4250 2.3670 -5.6594 11 6 3.2797 3.7358 -6.8847 12 7 3.0047 2.6950 -7.8784 13 6 2.6874 3.0429 -9.1643 14 1 2.6355 4.0845 -9.4447 15 6 2.4325 2.0567 -10.1073 16 7 2.4954 0.7872 -9.7653 17 14 1.9989 2.5312 -11.8612 18 1 3.2414 2.6331 -12.6679 19 1 1.1106 1.4963 -12.4487 20 1 1.2999 3.8414 -11.8610 21 6 3.9911 4.1585 -4.5019 22 1 3.9425 5.1514 -4.9489 23 6 5.3928 3.8930 -3.9491 24 6 2.9368 4.0196 -3.3820 25 7 2.7244 3.3944 -0.6788 26 7 2.7370 3.4233 0.6084 27 7 2.3036 2.1770 1.0827 28 6 2.1663 1.7758 2.4849 29 6 0.7567 2.1118 2.9759 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.4551 2.8334 -5.3646 36 1 2.3896 1.3178 -5.1740 37 1 4.1256 4.3389 -7.2146 38 1 2.4018 4.3720 -6.7723 39 1 3.0517 1.7595 -7.6265 40 1 2.3170 0.0981 -10.4242 41 1 6.1155 3.9166 -4.7648 42 1 5.6462 4.6603 -3.2174 43 1 5.4156 2.9135 -3.4717 44 1 3.3949 4.1818 -2.4063 45 1 2.1200 4.7241 -3.5392 46 1 2.3360 0.7028 2.5741 47 1 2.8987 2.3109 3.0894 48 1 0.6544 1.8128 4.0191 49 1 0.5870 3.1848 2.8867 50 1 0.0242 1.5766 2.3715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106660533.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:49 Heat of formation + Delta-G solvation = 67.692846 kcal Electronic energy + Delta-G solvation = -29681.933813 eV Core-core repulsion = 25746.541306 eV Total energy + Delta-G solvation = -3935.392506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.51173 -39.72776 -37.75773 -36.15772 -34.55084 -34.07709 -32.60909 -31.31076 -30.96117 -30.18925 -28.80136 -26.37287 -25.79423 -24.81565 -24.28475 -23.53468 -22.63612 -21.07909 -20.64973 -19.62043 -19.54582 -17.73892 -16.96351 -16.48528 -16.14437 -15.75355 -15.51136 -15.07832 -14.93054 -14.58919 -14.29687 -14.15024 -13.93099 -13.46602 -13.35298 -13.15322 -13.12348 -12.94598 -12.83997 -12.78310 -12.65504 -12.34873 -12.20187 -11.91720 -11.68105 -11.58363 -11.31833 -11.19409 -11.09290 -10.89971 -10.79733 -10.49209 -10.42017 -10.39049 -10.20660 -9.91274 -9.85991 -9.59731 -9.32614 -8.82505 -8.46157 -6.86514 -5.70528 -2.99379 0.91807 1.62354 1.74020 3.06018 3.32808 3.47787 3.52618 3.54560 3.90642 3.94524 4.26042 4.29126 4.42132 4.54348 4.63107 4.70204 4.83144 4.90561 4.92291 4.95579 5.08170 5.10457 5.13140 5.34693 5.37058 5.46282 5.54288 5.56551 5.64468 5.66280 5.73292 5.77616 5.83039 5.93648 5.98849 6.09061 6.13790 6.16947 6.20063 6.24922 6.34009 6.37078 6.50449 6.66306 6.80303 6.94408 7.67244 7.75283 7.79217 8.26026 8.48072 9.59156 10.17127 10.51681 11.52250 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.002484 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.853495 B =11270.762793 C =12221.142521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C 0.126 3.874 4 C -0.094 4.094 5 C 0.619 3.381 6 O -0.538 6.538 7 N -0.605 5.605 8 C 0.118 3.882 9 C -0.103 4.103 10 H 0.082 0.918 11 C 0.163 3.837 12 N -0.733 5.733 13 C -0.239 4.239 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.932 5.932 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.101 4.101 22 H 0.088 0.912 23 C -0.138 4.138 24 C 0.097 3.903 25 N -0.201 5.201 26 N -0.072 5.072 27 N -0.360 5.360 28 C 0.116 3.884 29 C -0.174 4.174 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 1.765 29.546 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.012 4.012 4 C -0.233 4.233 5 C 0.406 3.594 6 O -0.415 6.415 7 N -0.337 5.337 8 C -0.004 4.004 9 C -0.123 4.123 10 H 0.100 0.900 11 C 0.035 3.965 12 N -0.377 5.377 13 C -0.370 4.370 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.121 4.121 22 H 0.106 0.894 23 C -0.196 4.196 24 C -0.027 4.027 25 N -0.074 5.074 26 N -0.051 5.051 27 N -0.146 5.146 28 C -0.005 4.005 29 C -0.232 4.232 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.087 0.913 46 H 0.119 0.881 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.391 2.604 29.786 29.902 hybrid contribution -0.490 -0.890 -1.018 1.439 sum -0.881 1.713 28.767 28.832 Atomic orbital electron populations 1.21728 0.93026 1.02977 1.02378 1.20494 0.97378 0.87230 1.05374 1.21928 0.96652 0.96294 0.86298 1.21186 1.14756 0.92108 0.95274 1.16247 0.77757 0.83751 0.81687 1.90783 1.48208 1.19345 1.83165 1.48777 1.64115 1.14065 1.06748 1.22518 0.98601 1.02336 0.76915 1.22395 0.97478 0.97235 0.95210 0.90001 1.20729 0.97252 0.91888 0.86598 1.42386 1.84091 1.04327 1.06937 1.19216 1.39028 0.92405 0.86329 0.91201 1.24746 1.02815 0.95257 0.98234 1.69667 1.56174 0.98495 1.33759 0.86196 0.77795 0.77169 0.85069 1.21796 1.21822 1.20798 1.22125 0.94883 0.99934 0.95143 0.89393 1.21801 0.95821 1.01275 1.00675 1.22809 0.96801 0.82015 1.01035 1.74573 1.10987 1.18043 1.03777 1.81969 1.20464 0.99001 1.03682 1.50460 1.45572 1.11184 1.07419 1.21977 1.00192 1.02047 0.76236 1.22265 0.94890 1.03597 1.02440 0.91409 0.90998 0.93050 0.86362 0.90439 0.90277 0.89603 0.95958 0.96057 0.78218 0.93535 0.92292 0.92781 0.93032 0.87748 0.91265 0.88064 0.87557 0.89716 0.91203 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.89 37.16 0.37 -0.77 16 2 C -0.07 -0.56 5.63 -27.88 -0.16 -0.72 16 3 C 0.13 1.38 6.27 -81.87 -0.51 0.87 16 4 C -0.09 -1.31 6.87 -83.55 -0.57 -1.88 16 5 C 0.62 10.01 7.91 -12.48 -0.10 9.91 16 6 O -0.54 -9.69 14.98 5.28 0.08 -9.61 16 7 N -0.61 -9.57 3.32 -170.38 -0.57 -10.13 16 8 C 0.12 2.05 6.34 -2.32 -0.01 2.04 16 9 C -0.10 -1.73 2.76 -89.22 -0.25 -1.98 16 10 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 11 C 0.16 3.27 5.37 -4.04 -0.02 3.24 16 12 N -0.73 -18.70 5.46 -59.90 -0.33 -19.02 16 13 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 17 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.10 -1.37 3.31 -89.20 -0.30 -1.66 16 22 H 0.09 1.11 7.71 -51.93 -0.40 0.71 16 23 C -0.14 -1.72 8.91 37.16 0.33 -1.39 16 24 C 0.10 1.32 6.22 -2.39 -0.01 1.30 16 25 N -0.20 -2.77 9.36 32.84 0.31 -2.47 16 26 N -0.07 -0.90 13.78 60.35 0.83 -0.06 16 27 N -0.36 -3.40 3.63 -56.85 -0.21 -3.61 16 28 C 0.12 0.55 7.02 -4.04 -0.03 0.52 16 29 C -0.17 -0.67 10.24 37.16 0.38 -0.29 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.33 6.12 -51.93 -0.32 0.01 16 33 H 0.12 1.28 6.42 -51.93 -0.33 0.94 16 34 H 0.08 0.42 7.18 -51.93 -0.37 0.05 16 35 H 0.08 1.44 7.78 -51.93 -0.40 1.03 16 36 H 0.09 1.65 7.88 -51.93 -0.41 1.24 16 37 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 39 H 0.38 10.36 7.56 -40.82 -0.31 10.05 16 40 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.10 1.40 5.17 -51.93 -0.27 1.13 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.10 0.25 7.16 -51.93 -0.37 -0.12 16 47 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.30 6.12 -51.93 -0.32 -0.01 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -34.23 399.10 -7.39 -41.62 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.10 Total: 5.74 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.13 Total: 1.77 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.77 Total: -63.26 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.23 -7.39 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106660533.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.314 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds