Wall clock time and date at job start Tue Mar 31 2020 20:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47110 * 2 1 4 4 C 1.36598 * 126.58286 * 270.02581 * 3 2 1 5 5 C 1.47517 * 125.76850 * 0.04071 * 4 3 2 6 6 O 1.21598 * 120.00340 * 359.71350 * 5 4 3 7 7 N 1.34777 * 119.99790 * 179.71470 * 5 4 3 8 8 C 1.48315 * 127.77039 * 179.97438 * 7 5 4 9 9 C 1.54385 * 104.53750 * 219.53004 * 8 7 5 10 10 H 1.08997 * 110.34548 * 95.18221 * 9 8 7 11 11 C 1.53004 * 110.34091 * 217.33303 * 9 8 7 12 12 N 1.46499 * 109.47198 * 292.12406 * 11 9 8 13 13 C 1.36939 * 119.99933 * 180.27608 * 12 11 9 14 14 H 1.08001 * 119.99700 * 359.72658 * 13 12 11 15 15 C 1.38810 * 120.00095 * 179.71972 * 13 12 11 16 16 N 1.31624 * 119.99740 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00044 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47144 * 90.00258 * 17 15 13 19 19 H 1.48500 * 109.47140 * 210.00775 * 17 15 13 20 20 H 1.48502 * 109.46967 * 330.00206 * 17 15 13 21 21 C 1.54283 * 105.05420 * 336.25517 * 9 8 7 22 22 H 1.08995 * 110.34709 * 240.97088 * 21 9 8 23 23 C 1.53002 * 110.34028 * 118.81593 * 21 9 8 24 24 C 1.48139 * 127.84024 * 0.02562 * 7 5 4 25 25 N 1.34399 * 108.45760 * 179.77475 * 4 3 2 26 26 N 1.28759 * 109.52502 * 0.22746 * 25 4 3 27 27 N 1.34820 * 126.57652 * 90.19594 * 3 2 1 28 28 C 1.46497 * 126.59706 * 359.97438 * 27 3 2 29 29 C 1.52999 * 109.47361 * 270.24730 * 28 27 3 30 30 H 1.09002 * 109.47344 * 59.99888 * 1 2 3 31 31 H 1.08999 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46945 * 300.00009 * 1 2 3 33 33 H 1.08998 * 109.46973 * 240.00528 * 2 1 3 34 34 H 1.09002 * 109.47344 * 120.00112 * 2 1 3 35 35 H 1.08998 * 110.38541 * 100.79826 * 8 7 5 36 36 H 1.09004 * 110.50344 * 338.31646 * 8 7 5 37 37 H 1.09009 * 109.46730 * 172.12193 * 11 9 8 38 38 H 1.08998 * 109.46846 * 52.12738 * 11 9 8 39 39 H 0.97001 * 119.99790 * 359.97438 * 12 11 9 40 40 H 0.96998 * 119.99409 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.47026 * 60.00792 * 23 21 9 42 42 H 1.09009 * 109.47071 * 179.97438 * 23 21 9 43 43 H 1.08992 * 109.47525 * 300.00076 * 23 21 9 44 44 H 1.09004 * 110.40600 * 21.62261 * 24 7 5 45 45 H 1.09000 * 110.51348 * 259.24364 * 24 7 5 46 46 H 1.09003 * 109.46866 * 30.25069 * 28 27 3 47 47 H 1.08998 * 109.47229 * 150.24511 * 28 27 3 48 48 H 1.09003 * 109.47108 * 179.97438 * 29 28 27 49 49 H 1.09002 * 109.46892 * 299.99941 * 29 28 27 50 50 H 1.09001 * 109.46975 * 60.00223 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3032 2.1885 -1.0969 5 6 2.1527 1.7674 -2.5026 6 8 1.7609 0.6460 -2.7628 7 7 2.4496 2.6255 -3.4986 8 6 2.3630 2.3863 -4.9598 9 6 3.6118 3.0832 -5.5412 10 1 4.4250 2.3670 -5.6594 11 6 3.2797 3.7358 -6.8847 12 7 3.0047 2.6950 -7.8784 13 6 2.6874 3.0429 -9.1643 14 1 2.6355 4.0845 -9.4447 15 6 2.4325 2.0567 -10.1073 16 7 2.4954 0.7872 -9.7653 17 14 1.9989 2.5312 -11.8612 18 1 3.2414 2.6331 -12.6679 19 1 1.1106 1.4963 -12.4487 20 1 1.2999 3.8414 -11.8610 21 6 3.9911 4.1585 -4.5019 22 1 3.9425 5.1514 -4.9489 23 6 5.3928 3.8930 -3.9491 24 6 2.9368 4.0196 -3.3820 25 7 2.7244 3.3944 -0.6788 26 7 2.7370 3.4233 0.6084 27 7 2.3036 2.1770 1.0827 28 6 2.1663 1.7758 2.4849 29 6 0.7567 2.1118 2.9759 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.4551 2.8334 -5.3646 36 1 2.3896 1.3178 -5.1740 37 1 4.1256 4.3389 -7.2146 38 1 2.4018 4.3720 -6.7723 39 1 3.0517 1.7595 -7.6265 40 1 2.3170 0.0981 -10.4242 41 1 6.1155 3.9166 -4.7648 42 1 5.6462 4.6603 -3.2174 43 1 5.4156 2.9135 -3.4717 44 1 3.3949 4.1818 -2.4063 45 1 2.1200 4.7241 -3.5392 46 1 2.3360 0.7028 2.5741 47 1 2.8987 2.3109 3.0894 48 1 0.6544 1.8128 4.0191 49 1 0.5870 3.1848 2.8867 50 1 0.0242 1.5766 2.3715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106660533.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:48 Heat of formation + Delta-G solvation = 44.943543 kcal Electronic energy + Delta-G solvation = -29682.920296 eV Core-core repulsion = 25746.541306 eV Total energy + Delta-G solvation = -3936.378990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.40575 -40.99627 -39.07020 -36.88057 -36.37152 -34.77707 -34.08029 -32.99902 -31.64368 -31.22410 -30.28880 -27.49566 -27.29328 -25.61588 -25.30497 -24.83215 -23.86698 -22.50412 -21.41885 -20.90666 -20.66449 -19.18075 -18.50119 -17.47882 -17.18122 -16.98922 -16.68426 -16.34302 -15.84199 -15.76612 -15.54291 -15.25608 -15.15534 -14.78972 -14.70837 -14.35117 -14.15402 -13.92494 -13.91640 -13.71273 -13.49291 -13.35259 -13.16711 -13.06761 -12.90497 -12.73297 -12.57658 -12.44288 -12.30456 -12.14437 -11.99435 -11.90276 -11.89376 -11.72761 -11.56478 -11.35092 -11.21973 -11.08172 -10.91266 -10.30694 -9.72928 -8.97758 -7.92433 -5.21609 0.06704 0.56133 1.04131 1.48222 1.50421 1.58779 1.85907 2.15146 2.57721 3.05083 3.25830 3.41030 3.49205 3.55283 3.62196 3.71121 3.85431 3.95581 4.05832 4.18135 4.22207 4.27008 4.28663 4.36413 4.38825 4.45347 4.53288 4.55019 4.60671 4.72227 4.75834 4.84131 4.85716 4.88761 4.90953 4.94339 5.05846 5.08150 5.16793 5.20409 5.22575 5.26758 5.32417 5.35826 5.49417 5.51892 5.54913 6.29242 6.46226 6.78539 7.05284 7.35334 8.11236 8.33978 9.31308 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.002484 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.853495 B =11270.762793 C =12221.142521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C 0.137 3.863 4 C -0.123 4.123 5 C 0.613 3.387 6 O -0.567 6.567 7 N -0.608 5.608 8 C 0.124 3.876 9 C -0.092 4.092 10 H 0.069 0.931 11 C 0.165 3.835 12 N -0.747 5.747 13 C -0.242 4.242 14 H 0.079 0.921 15 C -0.079 4.079 16 N -0.971 5.971 17 Si 0.975 3.025 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.268 1.268 21 C -0.092 4.092 22 H 0.106 0.894 23 C -0.133 4.133 24 C 0.100 3.900 25 N -0.216 5.216 26 N -0.085 5.085 27 N -0.345 5.345 28 C 0.102 3.898 29 C -0.170 4.170 30 H 0.033 0.967 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.028 0.972 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.133 0.867 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.051 0.949 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 2.840 31.994 32.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.003 4.003 4 C -0.262 4.262 5 C 0.401 3.599 6 O -0.446 6.446 7 N -0.340 5.340 8 C 0.001 3.999 9 C -0.111 4.111 10 H 0.088 0.912 11 C 0.038 3.962 12 N -0.389 5.389 13 C -0.374 4.374 14 H 0.097 0.903 15 C -0.271 4.271 16 N -0.622 5.622 17 Si 0.804 3.196 18 H -0.214 1.214 19 H -0.224 1.224 20 H -0.193 1.193 21 C -0.111 4.111 22 H 0.125 0.875 23 C -0.190 4.190 24 C -0.022 4.022 25 N -0.089 5.089 26 N -0.064 5.064 27 N -0.131 5.131 28 C -0.016 4.016 29 C -0.228 4.228 30 H 0.052 0.948 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.130 0.870 45 H 0.096 0.904 46 H 0.150 0.850 47 H 0.139 0.861 48 H 0.132 0.868 49 H 0.071 0.929 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.183 3.749 32.289 32.507 hybrid contribution -0.567 -1.225 -1.607 2.099 sum -0.750 2.525 30.682 30.795 Atomic orbital electron populations 1.21708 0.92464 1.03832 1.01699 1.20577 0.97713 0.85831 1.06162 1.22202 0.95214 0.96921 0.85918 1.21000 1.17327 0.93286 0.94626 1.16652 0.77069 0.83394 0.82738 1.90756 1.49460 1.20514 1.83861 1.48836 1.64257 1.15054 1.05825 1.22259 0.98572 1.00532 0.78529 1.22217 0.96564 0.97800 0.94549 0.91227 1.20875 0.97534 0.90921 0.86859 1.42619 1.84079 1.04908 1.07329 1.19656 1.37494 0.92767 0.87446 0.90327 1.25605 1.03794 0.95269 1.02456 1.69839 1.58034 0.99515 1.34848 0.85118 0.77403 0.77111 0.80006 1.21369 1.22412 1.19270 1.22125 0.95587 0.99460 0.93968 0.87542 1.21758 0.94897 1.01267 1.01113 1.22912 0.97053 0.80823 1.01405 1.74506 1.11630 1.18193 1.04531 1.81861 1.20875 1.00558 1.03137 1.50787 1.43686 1.09824 1.08759 1.22564 1.01248 1.04195 0.73609 1.22263 0.93985 1.02422 1.04090 0.94764 0.89409 0.91002 0.88857 0.86293 0.91360 0.92413 0.95083 0.95395 0.79609 0.94104 0.92095 0.90612 0.94371 0.87013 0.90420 0.84957 0.86054 0.86805 0.92941 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.06 -1.00 5.63 29.85 0.17 -0.84 16 3 C 0.14 2.85 6.27 41.72 0.26 3.11 16 4 C -0.12 -3.44 6.87 40.82 0.28 -3.16 16 5 C 0.61 20.69 7.91 86.69 0.69 21.38 16 6 O -0.57 -21.67 14.98 -4.02 -0.06 -21.73 16 7 N -0.61 -19.90 3.32 -811.20 -2.69 -22.59 16 8 C 0.12 4.53 6.34 86.50 0.55 5.08 16 9 C -0.09 -3.11 2.76 -9.89 -0.03 -3.14 16 10 H 0.07 2.55 7.71 -2.39 -0.02 2.53 16 11 C 0.16 6.58 5.37 86.38 0.46 7.04 16 12 N -0.75 -38.86 5.46 -343.44 -1.87 -40.74 16 13 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 14 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 15 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 16 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 17 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 C -0.09 -2.39 3.31 -9.87 -0.03 -2.42 16 22 H 0.11 2.43 7.71 -2.39 -0.02 2.42 16 23 C -0.13 -3.13 8.91 71.98 0.64 -2.49 16 24 C 0.10 2.69 6.22 86.55 0.54 3.22 16 25 N -0.22 -5.86 9.36 -50.00 -0.47 -6.33 16 26 N -0.09 -2.01 13.78 37.02 0.51 -1.50 16 27 N -0.34 -5.81 3.63 -333.77 -1.21 -7.02 16 28 C 0.10 0.61 7.02 86.38 0.61 1.21 16 29 C -0.17 -0.78 10.24 71.98 0.74 -0.04 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.74 6.12 -2.39 -0.01 0.73 16 33 H 0.09 2.03 6.42 -2.39 -0.02 2.02 16 34 H 0.12 0.87 7.18 -2.39 -0.02 0.85 16 35 H 0.07 2.62 7.78 -2.39 -0.02 2.60 16 36 H 0.06 2.41 7.88 -2.38 -0.02 2.40 16 37 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.03 1.10 8.02 -2.39 -0.02 1.08 16 39 H 0.37 20.92 7.56 -92.71 -0.70 20.22 16 40 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.11 2.90 5.17 -2.38 -0.01 2.89 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.13 0.03 7.16 -2.39 -0.02 0.01 16 47 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.06 0.37 6.12 -2.39 -0.01 0.36 16 Total: -1.00 -76.88 399.10 3.65 -73.23 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.25 Total: 28.05 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.89 Total: 10.52 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -5.45 Total: -139.26 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.06 Total: -21.73 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.88 3.65 -73.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106660533.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.169 kcal (2) G-P(sol) polarization free energy of solvation -76.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds