Wall clock time and date at job start Tue Mar 31 2020 18:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36595 * 126.58051 * 2 1 4 4 C 1.47526 * 125.76990 * 0.03991 * 3 2 1 5 5 O 1.21595 * 119.99928 * 359.71318 * 4 3 2 6 6 N 1.34773 * 120.00114 * 179.71796 * 4 3 2 7 7 C 1.47020 * 125.64807 * 179.97438 * 6 4 3 8 8 C 1.54325 * 107.27137 * 178.90348 * 7 6 4 9 9 H 1.09004 * 110.72145 * 96.34593 * 8 7 6 10 10 C 1.53004 * 110.71948 * 219.44289 * 8 7 6 11 11 N 1.46499 * 109.47198 * 291.15745 * 10 8 7 12 12 C 1.36939 * 119.99933 * 180.27608 * 11 10 8 13 13 H 1.08001 * 119.99700 * 359.72658 * 12 11 10 14 14 C 1.38810 * 120.00095 * 179.71972 * 12 11 10 15 15 N 1.31624 * 119.99740 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00044 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47201 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47080 * 120.00466 * 16 14 12 19 19 H 1.48506 * 109.47018 * 240.00565 * 16 14 12 20 20 C 1.55155 * 103.10293 * 337.89534 * 8 7 6 21 21 H 1.08997 * 111.00346 * 277.34006 * 20 8 7 22 22 C 1.52999 * 111.00477 * 153.48576 * 20 8 7 23 23 C 1.47420 * 125.64904 * 359.95593 * 6 4 3 24 24 N 1.34401 * 108.46391 * 179.77353 * 3 2 1 25 25 N 1.28763 * 109.51710 * 0.22931 * 24 3 2 26 26 N 1.34815 * 126.58285 * 180.16562 * 2 1 3 27 27 C 1.46503 * 126.59270 * 0.02562 * 26 2 1 28 28 C 1.52999 * 109.47060 * 120.26854 * 27 26 2 29 29 C 1.53002 * 109.46904 * 240.26802 * 27 26 2 30 30 H 1.08996 * 109.47517 * 90.02661 * 1 2 3 31 31 H 1.09002 * 109.46692 * 210.02690 * 1 2 3 32 32 H 1.09000 * 109.47285 * 330.01816 * 1 2 3 33 33 H 1.08997 * 109.88257 * 59.48494 * 7 6 4 34 34 H 1.09003 * 109.88420 * 298.32042 * 7 6 4 35 35 H 1.09009 * 109.46730 * 171.15533 * 10 8 7 36 36 H 1.08998 * 109.46846 * 51.16077 * 10 8 7 37 37 H 0.97001 * 119.99790 * 359.97438 * 11 10 8 38 38 H 0.96998 * 119.99409 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.46911 * 60.00277 * 22 20 8 40 40 H 1.09004 * 109.46795 * 180.02562 * 22 20 8 41 41 H 1.08998 * 109.47407 * 300.00086 * 22 20 8 42 42 H 1.09002 * 110.36938 * 323.00298 * 23 6 4 43 43 H 1.09002 * 110.37126 * 85.21683 * 23 6 4 44 44 H 1.08990 * 109.47185 * 0.26838 * 27 26 2 45 45 H 1.08998 * 109.47589 * 299.99954 * 28 27 26 46 46 H 1.09007 * 109.47077 * 60.00250 * 28 27 26 47 47 H 1.09004 * 109.47002 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.46973 * 59.99530 * 29 27 26 49 49 H 1.08997 * 109.46924 * 179.97438 * 29 27 26 50 50 H 1.09003 * 109.47276 * 300.00369 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6859 2.7628 -0.0037 6 7 2.7816 3.4987 0.0065 7 6 2.4759 4.9368 0.0074 8 6 3.8216 5.6913 0.0428 9 1 4.1263 5.9838 -0.9620 10 6 3.7323 6.9150 0.9571 11 7 2.8509 7.9151 0.3495 12 6 2.6223 9.1046 0.9884 13 1 3.0882 9.3035 1.9422 14 6 1.7918 10.0547 0.4100 15 7 1.2237 9.8120 -0.7522 16 14 1.4794 11.6769 1.2818 17 1 2.2291 11.7025 2.5634 18 1 1.9344 12.7975 0.4202 19 1 0.0267 11.8205 1.5547 20 6 4.7997 4.6388 0.6285 21 1 4.7413 4.6141 1.7166 22 6 6.2332 4.9042 0.1642 23 6 4.2457 3.3267 0.0131 24 7 3.5984 0.6790 0.0050 25 7 3.6299 -0.6083 0.0033 26 7 2.3104 -1.0826 -0.0031 27 6 1.8864 -2.4849 -0.0077 28 6 2.4352 -3.1795 -1.2556 29 6 2.4231 -3.1840 1.2429 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3634 0.8901 0.5135 33 1 1.8857 5.1897 0.8882 34 1 1.9271 5.1998 -0.8970 35 1 4.7266 7.3409 1.0922 36 1 3.3302 6.6165 1.9252 37 1 2.4328 7.7366 -0.5073 38 1 0.6431 10.4758 -1.1562 39 1 6.5453 5.8942 0.4966 40 1 6.8977 4.1517 0.5889 41 1 6.2777 4.8553 -0.9237 42 1 4.5244 2.4711 0.6282 43 1 4.6174 3.1992 -1.0036 44 1 0.7977 -2.5352 -0.0131 45 1 2.0529 -2.6815 -2.1465 46 1 3.5241 -3.1292 -1.2502 47 1 2.1201 -4.2230 -1.2587 48 1 2.0322 -2.6890 2.1319 49 1 2.1073 -4.2272 1.2397 50 1 3.5120 -3.1336 1.2483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106811101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:10 Heat of formation + Delta-G solvation = 65.322402 kcal Electronic energy + Delta-G solvation = -29340.354074 eV Core-core repulsion = 25404.858777 eV Total energy + Delta-G solvation = -3935.495296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.48281 -39.76708 -37.74058 -36.77770 -34.60289 -33.32727 -32.74741 -31.40227 -31.12582 -29.14139 -27.98987 -27.93625 -26.23929 -25.45469 -24.26413 -23.42583 -22.36574 -20.97714 -20.50191 -19.83193 -19.30416 -17.60360 -17.02435 -16.55687 -16.34880 -16.00731 -15.30080 -14.89100 -14.65626 -14.41790 -14.26661 -13.95527 -13.73375 -13.53859 -13.42568 -13.33540 -13.14610 -12.89263 -12.86076 -12.72023 -12.64090 -12.43117 -12.15625 -12.10573 -11.93288 -11.87970 -11.66229 -11.30921 -11.17934 -10.96199 -10.81950 -10.49904 -10.42490 -10.29742 -10.22531 -9.90462 -9.88507 -9.59531 -9.28958 -8.82698 -8.38384 -6.86376 -5.70714 -2.99388 0.94234 1.65056 1.72802 3.08611 3.33293 3.47714 3.53028 3.55463 3.82430 3.97387 4.19668 4.30268 4.31859 4.50165 4.62762 4.72577 4.76445 4.91855 4.92114 4.99886 5.04347 5.09106 5.13029 5.21189 5.36650 5.42772 5.51976 5.53634 5.61420 5.62327 5.64978 5.68530 5.72917 5.87725 5.90826 6.04673 6.13536 6.16984 6.22145 6.25477 6.35332 6.45757 6.52570 6.55458 6.78875 6.93174 7.64158 7.75928 7.80433 8.26558 8.47894 9.59138 10.16785 10.51407 11.52188 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002331 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.945126 B =12007.223311 C =12904.986779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.122 3.878 3 C -0.097 4.097 4 C 0.613 3.387 5 O -0.538 6.538 6 N -0.601 5.601 7 C 0.118 3.882 8 C -0.100 4.100 9 H 0.086 0.914 10 C 0.165 3.835 11 N -0.733 5.733 12 C -0.237 4.237 13 H 0.071 0.929 14 C -0.015 4.015 15 N -0.932 5.932 16 Si 0.906 3.094 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.100 4.100 21 H 0.084 0.916 22 C -0.137 4.137 23 C 0.106 3.894 24 N -0.201 5.201 25 N -0.070 5.070 26 N -0.358 5.358 27 C 0.144 3.856 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.024 0.976 36 H 0.021 0.979 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -30.203 0.719 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 C -0.237 4.237 4 C 0.399 3.601 5 O -0.415 6.415 6 N -0.333 5.333 7 C -0.003 4.003 8 C -0.120 4.120 9 H 0.104 0.896 10 C 0.037 3.963 11 N -0.377 5.377 12 C -0.369 4.369 13 H 0.089 0.911 14 C -0.211 4.211 15 N -0.581 5.581 16 Si 0.738 3.262 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.120 4.120 21 H 0.103 0.897 22 C -0.195 4.195 23 C -0.017 4.017 24 N -0.074 5.074 25 N -0.049 5.049 26 N -0.145 5.145 27 C 0.042 3.958 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.218 0.782 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.378 -30.422 0.845 30.747 hybrid contribution -1.311 0.976 0.073 1.636 sum 3.066 -29.447 0.918 29.620 Atomic orbital electron populations 1.20731 0.84772 1.05352 1.04680 1.21899 0.96224 0.86319 0.97143 1.21171 0.89001 0.95224 1.18269 1.16321 0.84750 0.81864 0.77153 1.90783 1.15467 1.83279 1.51977 1.48257 1.07141 1.06617 1.71273 1.22093 0.97794 0.77254 1.03182 1.22532 0.93149 0.95151 1.01149 0.89588 1.20644 0.94265 0.87491 0.93909 1.42380 1.55262 1.15618 1.24447 1.19262 1.22947 0.92580 1.02085 0.91147 1.24746 1.00335 0.98770 0.97236 1.69675 1.35680 1.35244 1.17499 0.86122 0.77564 0.83964 0.78577 1.20594 1.21945 1.21903 1.22426 0.95164 0.93760 1.00656 0.89732 1.21665 0.94579 1.01967 1.01288 1.22635 0.78946 0.98654 1.01431 1.74685 1.18961 1.03820 1.09982 1.81906 0.96376 1.03524 1.23051 1.50610 1.06330 1.07148 1.50421 1.21638 1.00492 0.75333 0.98301 1.22153 1.03195 1.00853 0.95806 1.22164 1.03274 1.00843 0.95802 0.89031 0.90851 0.86784 0.90459 0.90996 0.95778 0.96129 0.78233 0.93596 0.91730 0.92619 0.92465 0.89004 0.91429 0.87301 0.91693 0.90677 0.89919 0.91702 0.89923 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.40 36.00 0.34 -0.46 16 2 C 0.12 1.35 7.02 -81.88 -0.57 0.78 16 3 C -0.10 -1.37 6.84 -83.55 -0.57 -1.94 16 4 C 0.61 10.11 7.85 -12.48 -0.10 10.01 16 5 O -0.54 -9.98 15.05 5.28 0.08 -9.90 16 6 N -0.60 -9.67 3.33 -171.60 -0.57 -10.25 16 7 C 0.12 2.10 6.27 -3.06 -0.02 2.08 16 8 C -0.10 -1.66 2.45 -88.78 -0.22 -1.88 16 9 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 10 C 0.16 3.32 5.59 -4.04 -0.02 3.30 16 11 N -0.73 -18.75 5.48 -59.90 -0.33 -19.08 16 12 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 13 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 14 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 15 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 16 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 C -0.10 -1.35 3.10 -88.34 -0.27 -1.62 16 21 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 22 C -0.14 -1.57 9.32 37.16 0.35 -1.23 16 23 C 0.11 1.45 5.61 -2.40 -0.01 1.44 16 24 N -0.20 -2.79 9.39 32.85 0.31 -2.49 16 25 N -0.07 -0.86 13.67 60.35 0.82 -0.03 16 26 N -0.36 -3.44 3.28 -50.41 -0.17 -3.61 16 27 C 0.14 0.77 3.68 -67.93 -0.25 0.52 16 28 C -0.16 -0.74 9.47 37.16 0.35 -0.38 16 29 C -0.16 -0.74 9.47 37.16 0.35 -0.39 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.37 7.20 -51.93 -0.37 0.00 16 32 H 0.11 1.20 6.43 -51.93 -0.33 0.87 16 33 H 0.08 1.52 7.73 -51.93 -0.40 1.12 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 37 H 0.38 10.35 7.60 -40.82 -0.31 10.04 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.09 1.23 6.13 -51.93 -0.32 0.91 16 43 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 44 H 0.11 0.35 6.79 -51.93 -0.35 0.00 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -34.47 403.40 -7.34 -41.81 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.37 Total: 4.86 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.90 Total: 2.79 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: 0.79 Total: -63.45 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.47 -7.34 -41.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106811101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.136 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds