Wall clock time and date at job start Tue Mar 31 2020 18:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36595 * 126.58051 * 2 1 4 4 C 1.47526 * 125.76990 * 0.03991 * 3 2 1 5 5 O 1.21595 * 119.99928 * 359.71318 * 4 3 2 6 6 N 1.34773 * 120.00114 * 179.71796 * 4 3 2 7 7 C 1.47020 * 125.64807 * 179.97438 * 6 4 3 8 8 C 1.54325 * 107.27137 * 178.90348 * 7 6 4 9 9 H 1.09004 * 110.72145 * 96.34593 * 8 7 6 10 10 C 1.53004 * 110.71948 * 219.44289 * 8 7 6 11 11 N 1.46499 * 109.47198 * 291.15745 * 10 8 7 12 12 C 1.36939 * 119.99933 * 180.27608 * 11 10 8 13 13 H 1.08001 * 119.99700 * 359.72658 * 12 11 10 14 14 C 1.38810 * 120.00095 * 179.71972 * 12 11 10 15 15 N 1.31624 * 119.99740 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00044 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47201 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47080 * 120.00466 * 16 14 12 19 19 H 1.48506 * 109.47018 * 240.00565 * 16 14 12 20 20 C 1.55155 * 103.10293 * 337.89534 * 8 7 6 21 21 H 1.08997 * 111.00346 * 277.34006 * 20 8 7 22 22 C 1.52999 * 111.00477 * 153.48576 * 20 8 7 23 23 C 1.47420 * 125.64904 * 359.95593 * 6 4 3 24 24 N 1.34401 * 108.46391 * 179.77353 * 3 2 1 25 25 N 1.28763 * 109.51710 * 0.22931 * 24 3 2 26 26 N 1.34815 * 126.58285 * 180.16562 * 2 1 3 27 27 C 1.46503 * 126.59270 * 0.02562 * 26 2 1 28 28 C 1.52999 * 109.47060 * 120.26854 * 27 26 2 29 29 C 1.53002 * 109.46904 * 240.26802 * 27 26 2 30 30 H 1.08996 * 109.47517 * 90.02661 * 1 2 3 31 31 H 1.09002 * 109.46692 * 210.02690 * 1 2 3 32 32 H 1.09000 * 109.47285 * 330.01816 * 1 2 3 33 33 H 1.08997 * 109.88257 * 59.48494 * 7 6 4 34 34 H 1.09003 * 109.88420 * 298.32042 * 7 6 4 35 35 H 1.09009 * 109.46730 * 171.15533 * 10 8 7 36 36 H 1.08998 * 109.46846 * 51.16077 * 10 8 7 37 37 H 0.97001 * 119.99790 * 359.97438 * 11 10 8 38 38 H 0.96998 * 119.99409 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.46911 * 60.00277 * 22 20 8 40 40 H 1.09004 * 109.46795 * 180.02562 * 22 20 8 41 41 H 1.08998 * 109.47407 * 300.00086 * 22 20 8 42 42 H 1.09002 * 110.36938 * 323.00298 * 23 6 4 43 43 H 1.09002 * 110.37126 * 85.21683 * 23 6 4 44 44 H 1.08990 * 109.47185 * 0.26838 * 27 26 2 45 45 H 1.08998 * 109.47589 * 299.99954 * 28 27 26 46 46 H 1.09007 * 109.47077 * 60.00250 * 28 27 26 47 47 H 1.09004 * 109.47002 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.46973 * 59.99530 * 29 27 26 49 49 H 1.08997 * 109.46924 * 179.97438 * 29 27 26 50 50 H 1.09003 * 109.47276 * 300.00369 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6859 2.7628 -0.0037 6 7 2.7816 3.4987 0.0065 7 6 2.4759 4.9368 0.0074 8 6 3.8216 5.6913 0.0428 9 1 4.1263 5.9838 -0.9620 10 6 3.7323 6.9150 0.9571 11 7 2.8509 7.9151 0.3495 12 6 2.6223 9.1046 0.9884 13 1 3.0882 9.3035 1.9422 14 6 1.7918 10.0547 0.4100 15 7 1.2237 9.8120 -0.7522 16 14 1.4794 11.6769 1.2818 17 1 2.2291 11.7025 2.5634 18 1 1.9344 12.7975 0.4202 19 1 0.0267 11.8205 1.5547 20 6 4.7997 4.6388 0.6285 21 1 4.7413 4.6141 1.7166 22 6 6.2332 4.9042 0.1642 23 6 4.2457 3.3267 0.0131 24 7 3.5984 0.6790 0.0050 25 7 3.6299 -0.6083 0.0033 26 7 2.3104 -1.0826 -0.0031 27 6 1.8864 -2.4849 -0.0077 28 6 2.4352 -3.1795 -1.2556 29 6 2.4231 -3.1840 1.2429 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3634 0.8901 0.5135 33 1 1.8857 5.1897 0.8882 34 1 1.9271 5.1998 -0.8970 35 1 4.7266 7.3409 1.0922 36 1 3.3302 6.6165 1.9252 37 1 2.4328 7.7366 -0.5073 38 1 0.6431 10.4758 -1.1562 39 1 6.5453 5.8942 0.4966 40 1 6.8977 4.1517 0.5889 41 1 6.2777 4.8553 -0.9237 42 1 4.5244 2.4711 0.6282 43 1 4.6174 3.1992 -1.0036 44 1 0.7977 -2.5352 -0.0131 45 1 2.0529 -2.6815 -2.1465 46 1 3.5241 -3.1292 -1.2502 47 1 2.1201 -4.2230 -1.2587 48 1 2.0322 -2.6890 2.1319 49 1 2.1073 -4.2272 1.2397 50 1 3.5120 -3.1336 1.2483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106811101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:09 Heat of formation + Delta-G solvation = 42.433268 kcal Electronic energy + Delta-G solvation = -29341.346621 eV Core-core repulsion = 25404.858777 eV Total energy + Delta-G solvation = -3936.487844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.38784 -41.04861 -39.06828 -37.39264 -36.45003 -34.34745 -33.97272 -33.03749 -32.11715 -30.64219 -28.97260 -28.27524 -27.33042 -27.09104 -25.21410 -24.93101 -23.65721 -22.25755 -21.32273 -21.12371 -20.43752 -19.15231 -18.39600 -17.62445 -17.25112 -17.21063 -16.66894 -16.40979 -15.66048 -15.40194 -15.35148 -15.30249 -15.15731 -14.94609 -14.36274 -14.10554 -14.09462 -14.03692 -13.98153 -13.65816 -13.40782 -13.28781 -13.20258 -13.18984 -12.93541 -12.87731 -12.77641 -12.53885 -12.48408 -12.40761 -12.08834 -11.96885 -11.94277 -11.78173 -11.56221 -11.29479 -11.15845 -11.13574 -10.94100 -10.28234 -9.68930 -8.98873 -7.93614 -5.22686 0.07730 0.57258 1.01247 1.47658 1.48970 1.59006 1.86608 2.13416 2.56792 3.06031 3.24111 3.39170 3.44035 3.50857 3.59541 3.71078 3.76998 3.80944 3.97302 4.07979 4.17879 4.26628 4.40380 4.43588 4.53844 4.56409 4.58819 4.61543 4.63840 4.68199 4.73575 4.75493 4.81649 4.85598 4.87313 4.92137 5.03755 5.10403 5.18414 5.18882 5.20704 5.24130 5.26885 5.35754 5.50006 5.53384 5.55188 6.28327 6.39460 6.79317 7.03936 7.34524 8.09719 8.32975 9.30234 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002331 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.945126 B =12007.223311 C =12904.986779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.132 3.868 3 C -0.128 4.128 4 C 0.607 3.393 5 O -0.568 6.568 6 N -0.605 5.605 7 C 0.126 3.874 8 C -0.089 4.089 9 H 0.085 0.915 10 C 0.166 3.834 11 N -0.746 5.746 12 C -0.242 4.242 13 H 0.077 0.923 14 C -0.079 4.079 15 N -0.970 5.970 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.292 1.292 19 H -0.295 1.295 20 C -0.088 4.088 21 H 0.087 0.913 22 C -0.133 4.133 23 C 0.113 3.887 24 N -0.216 5.216 25 N -0.081 5.081 26 N -0.344 5.344 27 C 0.131 3.869 28 C -0.159 4.159 29 C -0.159 4.159 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.018 0.982 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.140 0.860 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.057 0.943 49 H 0.113 0.887 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -32.617 1.483 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.007 4.007 3 C -0.267 4.267 4 C 0.396 3.604 5 O -0.448 6.448 6 N -0.336 5.336 7 C 0.003 3.997 8 C -0.109 4.109 9 H 0.103 0.897 10 C 0.040 3.960 11 N -0.388 5.388 12 C -0.374 4.374 13 H 0.095 0.905 14 C -0.271 4.271 15 N -0.621 5.621 16 Si 0.804 3.196 17 H -0.189 1.189 18 H -0.219 1.219 19 H -0.222 1.222 20 C -0.108 4.108 21 H 0.106 0.894 22 C -0.190 4.190 23 C -0.009 4.009 24 N -0.089 5.089 25 N -0.060 5.060 26 N -0.131 5.131 27 C 0.032 3.968 28 C -0.216 4.216 29 C -0.217 4.217 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.036 0.964 37 H 0.205 0.795 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.158 0.842 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.131 0.869 48 H 0.076 0.924 49 H 0.131 0.869 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.090 -32.890 1.640 33.322 hybrid contribution -1.530 1.545 -0.143 2.179 sum 3.560 -31.346 1.497 31.583 Atomic orbital electron populations 1.20818 0.82741 1.06092 1.05641 1.22243 0.97320 0.85868 0.95275 1.20975 0.90021 0.94521 1.21159 1.16736 0.84417 0.82939 0.76343 1.90754 1.16664 1.84015 1.53351 1.48336 1.08330 1.05710 1.71252 1.21826 0.98032 0.78943 1.00894 1.22370 0.93510 0.94403 1.00582 0.89660 1.20762 0.93433 0.87680 0.94137 1.42597 1.56027 1.16073 1.24127 1.19677 1.22138 0.93398 1.02176 0.90479 1.25602 1.00817 1.02450 0.98207 1.69838 1.36782 1.36312 1.19176 0.85053 0.77070 0.79534 0.77982 1.18907 1.21934 1.22240 1.22415 0.95680 0.92020 1.00672 0.89439 1.21654 0.93129 1.02540 1.01725 1.22707 0.77327 0.98871 1.02024 1.74627 1.19060 1.04575 1.10647 1.81809 0.98038 1.02944 1.23205 1.50950 1.05118 1.08402 1.48593 1.22219 1.02419 0.72997 0.99177 1.22160 1.02097 1.02478 0.94906 1.22171 1.02182 1.02463 0.94893 0.87800 0.86881 0.89199 0.92995 0.93122 0.94676 0.96395 0.79491 0.94064 0.91989 0.90374 0.92011 0.88317 0.90706 0.84205 0.92429 0.92283 0.86859 0.92383 0.86865 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.40 71.23 0.67 -0.74 16 2 C 0.13 2.79 7.02 41.71 0.29 3.08 16 3 C -0.13 -3.61 6.84 40.82 0.28 -3.33 16 4 C 0.61 20.77 7.85 86.69 0.68 21.45 16 5 O -0.57 -22.12 15.05 -4.02 -0.06 -22.18 16 6 N -0.61 -20.09 3.33 -815.08 -2.71 -22.80 16 7 C 0.13 4.69 6.27 86.73 0.54 5.24 16 8 C -0.09 -3.00 2.45 -9.60 -0.02 -3.02 16 9 H 0.09 2.90 8.04 -2.38 -0.02 2.89 16 10 C 0.17 6.76 5.59 86.38 0.48 7.25 16 11 N -0.75 -39.01 5.48 -343.44 -1.88 -40.89 16 12 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 13 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 14 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 15 N -0.97 -61.21 13.06 21.65 0.28 -60.93 16 16 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 17 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 20 C -0.09 -2.29 3.10 -9.32 -0.03 -2.32 16 21 H 0.09 2.25 8.05 -2.39 -0.02 2.23 16 22 C -0.13 -2.77 9.32 71.98 0.67 -2.10 16 23 C 0.11 3.02 5.61 86.94 0.49 3.51 16 24 N -0.22 -5.93 9.39 -49.99 -0.47 -6.39 16 25 N -0.08 -1.92 13.67 37.02 0.51 -1.42 16 26 N -0.34 -6.03 3.28 -313.40 -1.03 -7.06 16 27 C 0.13 1.02 3.68 44.99 0.17 1.19 16 28 C -0.16 -1.02 9.47 71.98 0.68 -0.33 16 29 C -0.16 -1.00 9.47 71.98 0.68 -0.32 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 0.75 7.20 -2.39 -0.02 0.73 16 32 H 0.09 1.88 6.43 -2.39 -0.02 1.87 16 33 H 0.05 2.18 7.73 -2.39 -0.02 2.16 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.02 0.75 8.00 -2.39 -0.02 0.73 16 37 H 0.37 20.90 7.60 -92.71 -0.70 20.20 16 38 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 42 H 0.10 2.58 6.13 -2.39 -0.01 2.56 16 43 H 0.07 1.92 7.99 -2.39 -0.02 1.90 16 44 H 0.14 0.28 6.79 -2.39 -0.02 0.26 16 45 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.11 0.05 8.14 -2.38 -0.02 0.03 16 48 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -77.22 403.40 3.78 -73.43 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.23 Total: 26.49 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 6.89 Total: 12.34 kcal Atomic # 7 Polarization: -134.19 SS G_CDS: -5.30 Total: -139.49 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.06 Total: -22.18 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -77.22 3.78 -73.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106811101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.867 kcal (2) G-P(sol) polarization free energy of solvation -77.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds