Wall clock time and date at job start Tue Mar 31 2020 20:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47137 * 2 1 4 4 C 1.52992 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47322 * 55.00246 * 4 3 2 6 6 C 1.52999 * 109.47588 * 295.00124 * 4 3 2 7 7 C 1.53007 * 109.47135 * 174.99898 * 4 3 2 8 8 C 1.50706 * 109.46908 * 185.00246 * 7 4 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 4 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46783 * 120.00280 * 22 20 18 25 25 H 1.48496 * 109.46765 * 240.00006 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.09001 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47679 * 300.00026 * 1 2 3 31 31 H 1.09004 * 109.47057 * 60.00002 * 1 2 3 32 32 H 1.08995 * 109.47269 * 240.00099 * 2 1 3 33 33 H 1.09000 * 109.46605 * 119.99795 * 2 1 3 34 34 H 1.09005 * 109.47312 * 59.99549 * 3 2 1 35 35 H 1.09004 * 109.47145 * 299.99944 * 3 2 1 36 36 H 1.08998 * 109.47182 * 300.00068 * 6 4 3 37 37 H 1.08998 * 109.47092 * 59.99504 * 6 4 3 38 38 H 1.09000 * 109.47524 * 180.02562 * 6 4 3 39 39 H 1.08998 * 109.47160 * 65.00657 * 7 4 3 40 40 H 1.08996 * 109.47236 * 305.00045 * 7 4 3 41 41 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 42 42 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 43 43 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 44 44 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 45 45 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 46 46 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 47 47 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 48 48 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 50 50 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8331 1.3082 7 6 4.0800 2.8795 -0.1251 8 6 5.5820 2.8705 -0.2481 9 8 6.1850 1.8184 -0.2367 10 7 6.2550 4.0317 -0.3706 11 6 7.7152 4.0230 -0.4895 12 6 8.2176 5.4384 -0.6135 13 6 8.6642 6.2299 0.3894 14 7 9.0138 7.4044 -0.1845 15 6 9.5585 8.5720 0.5128 16 6 10.0309 8.2727 1.9471 17 7 9.3947 9.5553 2.3146 18 6 9.5788 10.4628 3.3234 19 1 8.9654 11.3505 3.3697 20 6 10.5536 10.2416 4.2866 21 7 11.3013 9.1599 4.2299 22 14 10.8041 11.4792 5.6632 23 1 9.8441 12.6006 5.5016 24 1 10.5760 10.8163 6.9723 25 1 12.1919 12.0048 5.6097 26 6 8.4837 9.4663 1.1569 27 7 8.7850 7.3197 -1.4484 28 7 8.3064 6.1608 -1.7359 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7158 1.4226 2.1498 37 1 3.7161 -0.1906 1.3978 38 1 5.1695 0.8335 1.3089 39 1 3.7914 3.4463 0.7601 40 1 3.6458 3.3430 -1.0109 41 1 5.7727 4.8732 -0.3800 42 1 8.0042 3.4564 -1.3747 43 1 8.1491 3.5593 0.3963 44 1 8.7325 5.9740 1.4364 45 1 10.2869 9.1215 -0.0835 46 1 9.5528 7.4012 2.3942 47 1 11.1149 8.2701 2.0611 48 1 11.9822 9.0052 4.9032 49 1 8.3348 10.4150 0.6412 50 1 7.5495 8.9467 1.3697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107144120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:06 Heat of formation + Delta-G solvation = 92.864376 kcal Electronic energy + Delta-G solvation = -28004.431519 eV Core-core repulsion = 24070.130532 eV Total energy + Delta-G solvation = -3934.300987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.09804 -39.98769 -38.40244 -37.08879 -35.20941 -33.43873 -32.98021 -32.02068 -31.32685 -28.63703 -27.96954 -26.87017 -26.22085 -25.27283 -24.41035 -22.44470 -21.95806 -21.12775 -20.69726 -20.02509 -19.64541 -17.64617 -17.17147 -16.67317 -16.40363 -15.94627 -15.57680 -15.53430 -15.15356 -14.75817 -14.55677 -14.29580 -14.06312 -13.78785 -13.54242 -13.39598 -13.16717 -12.93323 -12.55932 -12.34087 -12.16659 -12.11229 -11.91352 -11.87305 -11.76068 -11.41372 -11.22580 -11.20677 -11.01613 -10.99480 -10.94955 -10.84455 -10.70049 -10.55391 -10.23474 -9.96054 -9.89641 -9.58294 -9.15295 -9.13256 -9.06792 -7.29204 -6.07986 -3.43442 1.78910 2.41700 2.56058 2.61272 3.23707 3.29636 3.32029 3.34727 4.19060 4.33418 4.42802 4.50328 4.58656 4.68429 4.70931 4.84266 4.85664 4.91300 5.01068 5.12123 5.17371 5.20734 5.27353 5.37645 5.39510 5.40689 5.49473 5.51564 5.58082 5.59543 5.63868 5.73444 5.74221 5.87290 5.90328 6.00348 6.01904 6.07565 6.13300 6.17603 6.22760 6.27090 6.37328 6.50467 6.76458 6.99761 7.13307 7.39444 7.64535 8.12900 8.70705 8.72456 9.38640 10.15840 11.09309 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.001907 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.497473 B =14679.016189 C =15764.233042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.078 0.922 6 C -0.155 4.155 7 C -0.138 4.138 8 C 0.514 3.486 9 O -0.539 6.539 10 N -0.725 5.725 11 C 0.215 3.785 12 C -0.063 4.063 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.232 4.232 19 H 0.088 0.912 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.268 5.268 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.402 0.598 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.191 0.809 45 H 0.132 0.868 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.471 -13.600 -7.505 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.154 4.154 4 C -0.094 4.094 5 H 0.096 0.904 6 C -0.212 4.212 7 C -0.178 4.178 8 C 0.301 3.699 9 O -0.416 6.416 10 N -0.378 5.378 11 C 0.090 3.910 12 C -0.202 4.202 13 C -0.169 4.169 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.359 4.359 19 H 0.106 0.894 20 C -0.198 4.198 21 N -0.565 5.565 22 Si 0.749 3.251 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.236 0.764 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.208 0.792 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.776 -13.427 -8.551 21.719 hybrid contribution -0.025 0.726 1.930 2.063 sum -14.800 -12.701 -6.620 20.596 Atomic orbital electron populations 1.21785 0.96071 1.01477 1.01711 1.21570 0.95545 0.96969 1.02279 1.21689 0.94697 0.96992 1.01997 1.20900 0.94434 0.94159 0.99923 0.90388 1.22001 1.03137 1.00190 0.95850 1.21779 0.91915 0.99836 1.04300 1.20687 0.90157 0.83362 0.75703 1.90671 1.70433 1.30772 1.49759 1.46119 1.07534 1.09242 1.74869 1.19266 0.79561 0.89045 1.03145 1.21742 1.09634 0.98624 0.90165 1.23507 1.04833 0.86740 1.01813 1.47916 1.39082 1.12595 1.06132 1.25290 0.99095 0.83810 0.94301 1.22748 1.00925 0.89550 0.83113 1.45677 1.37267 1.20996 1.28563 1.19053 1.15950 0.99502 1.01425 0.89426 1.24852 0.98087 0.97905 0.98992 1.69769 1.23697 1.26488 1.36500 0.85946 0.77867 0.79983 0.81337 1.20199 1.21429 1.21354 1.22928 0.92859 0.96842 0.88089 1.78275 1.16979 1.15110 0.96440 1.75020 1.15178 0.98432 1.24799 0.92918 0.92813 0.92859 0.92054 0.91670 0.91906 0.92010 0.93399 0.92792 0.90659 0.88853 0.88925 0.76360 0.89858 0.89714 0.79245 0.85031 0.94094 0.89009 0.93126 0.91968 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.13 -0.81 5.69 -26.73 -0.15 -0.96 16 3 C -0.12 -0.76 4.68 -26.74 -0.13 -0.88 16 4 C -0.08 -0.61 2.04 -90.62 -0.18 -0.79 16 5 H 0.08 0.74 7.95 -51.93 -0.41 0.33 16 6 C -0.15 -1.38 8.69 37.16 0.32 -1.06 16 7 C -0.14 -1.06 5.18 -27.88 -0.14 -1.21 16 8 C 0.51 5.56 7.55 -10.98 -0.08 5.48 16 9 O -0.54 -7.57 13.97 5.56 0.08 -7.50 16 10 N -0.73 -7.51 5.55 -61.47 -0.34 -7.85 16 11 C 0.21 2.52 6.23 -5.20 -0.03 2.49 16 12 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 13 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 14 N -0.26 -4.25 3.54 -56.31 -0.20 -4.45 16 15 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 16 C 0.16 3.30 6.90 -2.84 -0.02 3.28 16 17 N -0.60 -13.62 3.70 -177.89 -0.66 -14.28 16 18 C -0.23 -5.92 10.70 -15.06 -0.16 -6.09 16 19 H 0.09 2.16 7.83 -52.48 -0.41 1.75 16 20 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 21 N -0.92 -24.89 11.39 55.49 0.63 -24.26 16 22 Si 0.92 20.53 29.55 -169.99 -5.02 15.51 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.12 2.18 8.74 -2.96 -0.03 2.15 16 27 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 28 N -0.27 -4.39 12.41 33.29 0.41 -3.98 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 38 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.40 3.65 8.46 -40.82 -0.35 3.31 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.19 2.39 6.73 -52.49 -0.35 2.04 16 45 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 46 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 47 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 48 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 404.70 15.07 6.10 6.10 Total: -1.00 -29.93 404.70 -7.90 -37.82 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.27 Total: 2.70 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.42 Total: 0.91 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.64 Total: -55.55 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.08 Total: -7.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.93 -7.90 -37.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107144120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.687 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds