Wall clock time and date at job start Tue Mar 31 2020 20:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47137 * 2 1 4 4 C 1.52992 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47322 * 55.00246 * 4 3 2 6 6 C 1.52999 * 109.47588 * 295.00124 * 4 3 2 7 7 C 1.53007 * 109.47135 * 174.99898 * 4 3 2 8 8 C 1.50706 * 109.46908 * 185.00246 * 7 4 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 4 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46783 * 120.00280 * 22 20 18 25 25 H 1.48496 * 109.46765 * 240.00006 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.09001 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47679 * 300.00026 * 1 2 3 31 31 H 1.09004 * 109.47057 * 60.00002 * 1 2 3 32 32 H 1.08995 * 109.47269 * 240.00099 * 2 1 3 33 33 H 1.09000 * 109.46605 * 119.99795 * 2 1 3 34 34 H 1.09005 * 109.47312 * 59.99549 * 3 2 1 35 35 H 1.09004 * 109.47145 * 299.99944 * 3 2 1 36 36 H 1.08998 * 109.47182 * 300.00068 * 6 4 3 37 37 H 1.08998 * 109.47092 * 59.99504 * 6 4 3 38 38 H 1.09000 * 109.47524 * 180.02562 * 6 4 3 39 39 H 1.08998 * 109.47160 * 65.00657 * 7 4 3 40 40 H 1.08996 * 109.47236 * 305.00045 * 7 4 3 41 41 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 42 42 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 43 43 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 44 44 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 45 45 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 46 46 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 47 47 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 48 48 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 50 50 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8331 1.3082 7 6 4.0800 2.8795 -0.1251 8 6 5.5820 2.8705 -0.2481 9 8 6.1850 1.8184 -0.2367 10 7 6.2550 4.0317 -0.3706 11 6 7.7152 4.0230 -0.4895 12 6 8.2176 5.4384 -0.6135 13 6 8.6642 6.2299 0.3894 14 7 9.0138 7.4044 -0.1845 15 6 9.5585 8.5720 0.5128 16 6 10.0309 8.2727 1.9471 17 7 9.3947 9.5553 2.3146 18 6 9.5788 10.4628 3.3234 19 1 8.9654 11.3505 3.3697 20 6 10.5536 10.2416 4.2866 21 7 11.3013 9.1599 4.2299 22 14 10.8041 11.4792 5.6632 23 1 9.8441 12.6006 5.5016 24 1 10.5760 10.8163 6.9723 25 1 12.1919 12.0048 5.6097 26 6 8.4837 9.4663 1.1569 27 7 8.7850 7.3197 -1.4484 28 7 8.3064 6.1608 -1.7359 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7158 1.4226 2.1498 37 1 3.7161 -0.1906 1.3978 38 1 5.1695 0.8335 1.3089 39 1 3.7914 3.4463 0.7601 40 1 3.6458 3.3430 -1.0109 41 1 5.7727 4.8732 -0.3800 42 1 8.0042 3.4564 -1.3747 43 1 8.1491 3.5593 0.3963 44 1 8.7325 5.9740 1.4364 45 1 10.2869 9.1215 -0.0835 46 1 9.5528 7.4012 2.3942 47 1 11.1149 8.2701 2.0611 48 1 11.9822 9.0052 4.9032 49 1 8.3348 10.4150 0.6412 50 1 7.5495 8.9467 1.3697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107144120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:01 Heat of formation + Delta-G solvation = 74.810403 kcal Electronic energy + Delta-G solvation = -28005.214398 eV Core-core repulsion = 24070.130532 eV Total energy + Delta-G solvation = -3935.083866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.76 seconds Orbital eigenvalues (eV) -44.35215 -40.84853 -39.94085 -37.73226 -36.20447 -34.95188 -33.69564 -33.52942 -32.45657 -29.74075 -29.38823 -27.50151 -27.20128 -26.72276 -25.98864 -23.43236 -23.07828 -22.28321 -21.43661 -21.13626 -20.70549 -19.04683 -18.50866 -17.83099 -17.51574 -16.98005 -16.81005 -16.57108 -16.20840 -15.96731 -15.74126 -15.30375 -14.99625 -14.79180 -14.49421 -14.40077 -14.19750 -14.09193 -13.70781 -13.57613 -13.39573 -13.14685 -12.98379 -12.82121 -12.77311 -12.62239 -12.55379 -12.43116 -12.31015 -12.06643 -11.79415 -11.77108 -11.72850 -11.63225 -11.44632 -11.23709 -11.06164 -10.92194 -10.78829 -10.23652 -10.06341 -9.10913 -8.01310 -5.36470 0.56740 1.25252 1.29321 1.47865 1.49667 1.58263 1.72358 2.42010 2.45776 3.07498 3.12374 3.31367 3.34081 3.73513 3.81360 3.84497 3.91789 4.00391 4.02039 4.15776 4.27375 4.32324 4.45350 4.50078 4.57137 4.59195 4.64940 4.70811 4.76010 4.79164 4.84982 4.92629 4.97792 5.00860 5.02299 5.05523 5.10005 5.10295 5.22553 5.29279 5.31892 5.36811 5.42052 5.47018 5.59963 5.63737 5.66136 5.77202 6.57677 6.80375 7.29851 7.45777 7.48762 8.33555 9.15678 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.001907 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.497473 B =14679.016189 C =15764.233042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.110 4.110 4 C -0.073 4.073 5 H 0.060 0.940 6 C -0.152 4.152 7 C -0.133 4.133 8 C 0.512 3.488 9 O -0.575 6.575 10 N -0.719 5.719 11 C 0.219 3.781 12 C -0.048 4.048 13 C -0.014 4.014 14 N -0.268 5.268 15 C 0.104 3.896 16 C 0.165 3.835 17 N -0.627 5.627 18 C -0.237 4.237 19 H 0.092 0.908 20 C -0.056 4.056 21 N -0.949 5.949 22 Si 0.979 3.021 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.126 3.874 27 N -0.108 5.108 28 N -0.282 5.282 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.411 0.589 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.207 0.793 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.076 0.924 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.407 -13.185 -7.663 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.147 4.147 4 C -0.092 4.092 5 H 0.078 0.922 6 C -0.209 4.209 7 C -0.172 4.172 8 C 0.300 3.700 9 O -0.455 6.455 10 N -0.372 5.372 11 C 0.094 3.906 12 C -0.188 4.188 13 C -0.167 4.167 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.038 3.962 17 N -0.355 5.355 18 C -0.365 4.365 19 H 0.109 0.891 20 C -0.250 4.250 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.000 4.000 27 N -0.087 5.087 28 N -0.148 5.148 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.246 0.754 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.223 0.777 45 H 0.155 0.845 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.753 -12.993 -8.750 22.936 hybrid contribution 0.532 0.507 1.909 2.045 sum -16.221 -12.486 -6.841 21.583 Atomic orbital electron populations 1.21772 0.95381 1.01756 1.02001 1.21578 0.96145 0.96958 1.01865 1.21638 0.93195 0.97133 1.02765 1.20864 0.95583 0.94144 0.98631 0.92167 1.21954 1.01378 1.00783 0.96795 1.21824 0.89343 0.99932 1.06120 1.21260 0.91397 0.82672 0.74648 1.90666 1.71394 1.32038 1.51389 1.46052 1.06892 1.09714 1.74535 1.19214 0.80594 0.87585 1.03245 1.21944 1.08582 0.98995 0.89246 1.23828 1.04142 0.86117 1.02645 1.47717 1.39503 1.12761 1.06097 1.24697 0.98496 0.83693 0.92907 1.22620 0.99246 0.89088 0.85207 1.45908 1.38934 1.21471 1.29140 1.19383 1.15318 1.00029 1.01761 0.89075 1.25587 0.98435 0.99625 1.01308 1.69919 1.24441 1.28139 1.37133 0.85011 0.77481 0.78344 0.78464 1.18851 1.21982 1.21912 1.23017 0.92798 0.97845 0.86365 1.78282 1.18055 1.15688 0.96680 1.75008 1.15479 0.98571 1.25746 0.92720 0.92523 0.92532 0.92565 0.92080 0.91160 0.91118 0.92535 0.92520 0.93250 0.86952 0.86864 0.75366 0.90543 0.88939 0.77652 0.84456 0.93498 0.91828 0.93807 0.90582 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.13 -1.48 5.69 30.59 0.17 -1.31 16 3 C -0.11 -1.21 4.68 30.59 0.14 -1.07 16 4 C -0.07 -1.09 2.04 -10.79 -0.02 -1.11 16 5 H 0.06 1.12 7.95 -2.38 -0.02 1.10 16 6 C -0.15 -2.62 8.69 71.98 0.63 -1.99 16 7 C -0.13 -1.75 5.18 29.85 0.15 -1.59 16 8 C 0.51 10.41 7.55 87.66 0.66 11.07 16 9 O -0.58 -16.05 13.97 -3.00 -0.04 -16.09 16 10 N -0.72 -13.67 5.55 -466.80 -2.59 -16.26 16 11 C 0.22 4.86 6.23 85.63 0.53 5.39 16 12 C -0.05 -1.26 6.61 41.59 0.28 -0.99 16 13 C -0.01 -0.38 10.72 83.49 0.89 0.52 16 14 N -0.27 -8.18 3.54 -332.05 -1.18 -9.36 16 15 C 0.10 3.41 5.14 46.75 0.24 3.65 16 16 C 0.16 6.61 6.90 86.44 0.60 7.21 16 17 N -0.63 -28.06 3.70 -716.72 -2.65 -30.72 16 18 C -0.24 -11.95 10.70 84.03 0.90 -11.05 16 19 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.06 -2.88 5.50 84.86 0.47 -2.41 16 21 N -0.95 -52.03 11.39 21.65 0.25 -51.78 16 22 Si 0.98 42.15 29.55 68.60 2.03 44.18 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 26 C 0.13 4.34 8.74 86.48 0.76 5.09 16 27 N -0.11 -3.57 13.17 37.02 0.49 -3.09 16 28 N -0.28 -8.83 12.41 -48.60 -0.60 -9.44 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.75 6.56 -2.39 -0.02 0.73 16 34 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.91 6.56 -2.39 -0.02 0.90 16 38 H 0.05 1.12 5.95 -2.39 -0.01 1.11 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.41 6.50 8.46 -92.71 -0.78 5.71 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.21 4.77 6.73 -2.91 -0.02 4.75 16 45 H 0.14 4.37 8.14 -2.38 -0.02 4.35 16 46 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 47 H 0.06 2.92 7.16 -2.39 -0.02 2.91 16 48 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -63.99 404.70 2.96 -61.03 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.15 Total: 20.90 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 7.11 Total: 10.63 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -6.29 Total: -120.64 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.04 Total: -16.09 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -63.99 2.96 -61.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107144120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.835 kcal (2) G-P(sol) polarization free energy of solvation -63.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.76 seconds