Wall clock time and date at job start Tue Mar 31 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 C 1.52994 * 109.47347 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47347 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47405 * 305.00047 * 5 4 3 7 7 C 1.52996 * 109.47068 * 65.00368 * 5 4 3 8 8 C 1.50702 * 109.47159 * 185.00014 * 5 4 3 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 5 4 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 5 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 C 1.35354 * 126.75175 * 94.71299 * 12 11 10 14 14 N 1.35307 * 106.17659 * 179.85685 * 13 12 11 15 15 C 1.46507 * 125.86982 * 180.18678 * 14 13 12 16 16 C 1.53942 * 113.74119 * 14.03501 * 15 14 13 17 17 N 1.47807 * 86.03454 * 222.08684 * 16 15 14 18 18 C 1.36938 * 134.45479 * 204.64557 * 17 16 15 19 19 H 1.08005 * 120.00287 * 179.86350 * 18 17 16 20 20 C 1.38814 * 120.00114 * 359.86760 * 18 17 16 21 21 N 1.31618 * 119.99892 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00258 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47427 * 89.99708 * 22 20 18 24 24 H 1.48499 * 109.46875 * 209.99556 * 22 20 18 25 25 H 1.48500 * 109.46718 * 329.99103 * 22 20 18 26 26 C 1.47581 * 91.05641 * 24.54790 * 17 16 15 27 27 N 1.28722 * 108.26222 * 0.41521 * 14 13 12 28 28 N 1.28626 * 110.18016 * 359.73980 * 27 14 13 29 29 H 1.08997 * 109.46862 * 59.99755 * 1 2 3 30 30 H 1.08993 * 109.46806 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46641 * 299.99669 * 1 2 3 32 32 H 1.09002 * 109.46641 * 240.00331 * 2 1 3 33 33 H 1.08997 * 109.46862 * 120.00245 * 2 1 3 34 34 H 1.09009 * 109.46866 * 59.99935 * 3 2 1 35 35 H 1.09003 * 109.47260 * 300.00619 * 3 2 1 36 36 H 1.09009 * 109.47154 * 60.00156 * 4 3 2 37 37 H 1.09003 * 109.47483 * 300.00527 * 4 3 2 38 38 H 1.09002 * 109.47575 * 59.99595 * 7 5 4 39 39 H 1.09001 * 109.47551 * 179.97438 * 7 5 4 40 40 H 1.09003 * 109.47307 * 300.00352 * 7 5 4 41 41 H 0.97000 * 120.00317 * 0.28382 * 10 8 5 42 42 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 43 43 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 44 44 H 1.08005 * 126.90952 * 359.97438 * 13 12 11 45 45 H 1.09000 * 112.94227 * 145.62557 * 15 14 13 46 46 H 1.08998 * 113.76862 * 336.34730 * 16 15 14 47 47 H 1.08992 * 113.76986 * 107.74500 * 16 15 14 48 48 H 0.97003 * 120.00338 * 180.02562 * 21 20 18 49 49 H 1.08997 * 113.77148 * 221.15554 * 26 17 16 50 50 H 1.08995 * 113.86588 * 89.76811 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6458 3.4235 -0.8422 7 6 3.6748 3.5697 1.3068 8 6 5.5820 2.8867 -0.1232 9 8 6.1852 1.8375 -0.2031 10 7 6.2546 4.0543 -0.1507 11 6 7.7141 4.0562 -0.2765 12 6 8.2161 5.4771 -0.2820 13 6 8.6624 6.1825 0.7835 14 7 9.0100 7.4014 0.3098 15 6 9.5532 8.5074 1.1022 16 6 10.0331 8.0885 2.5037 17 7 9.3935 9.3322 2.9821 18 6 9.5784 10.1508 4.0642 19 1 8.9619 11.0288 4.1888 20 6 10.5584 9.8523 5.0009 21 7 11.3095 8.7822 4.8494 22 14 10.8102 10.9687 6.4774 23 1 9.9502 10.5096 7.5975 24 1 12.2343 10.9224 6.8957 25 1 10.4465 12.3614 6.1126 26 6 8.4777 9.3388 1.8248 27 7 8.7768 7.4237 -0.9560 28 7 8.3028 6.2913 -1.3399 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9338 0.9285 -0.8892 37 1 3.9331 0.9287 0.8908 38 1 4.1090 3.0312 2.1491 39 1 4.0385 4.5973 1.3066 40 1 2.5884 3.5684 1.3960 41 1 5.7722 4.8935 -0.0870 42 1 8.1521 3.5198 0.5652 43 1 7.9991 3.5661 -1.2075 44 1 8.7295 5.8405 1.8057 45 1 10.2769 9.1089 0.5522 46 1 9.5604 7.1799 2.8766 47 1 11.1175 8.0808 2.6126 48 1 11.9940 8.5733 5.5041 49 1 8.3228 10.3274 1.3928 50 1 7.5466 8.7989 1.9962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107167185.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:26 Heat of formation + Delta-G solvation = 90.890174 kcal Electronic energy + Delta-G solvation = -28108.661670 eV Core-core repulsion = 24174.275075 eV Total energy + Delta-G solvation = -3934.386595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.09827 -40.04345 -38.40001 -36.71112 -35.22189 -33.75948 -33.37279 -31.99753 -31.23111 -28.98342 -27.99447 -26.85996 -25.42899 -25.21700 -24.41064 -22.66371 -21.95433 -21.24444 -21.05019 -19.96334 -19.64539 -17.64155 -17.17162 -16.66579 -16.41813 -16.05950 -15.67358 -15.39838 -15.14645 -14.81283 -14.35709 -14.30121 -14.07312 -13.73115 -13.61962 -13.37279 -13.13969 -12.93575 -12.79110 -12.49107 -12.24293 -12.13811 -11.98943 -11.87087 -11.59932 -11.41065 -11.26404 -11.22283 -11.20949 -10.99225 -10.97937 -10.93904 -10.74286 -10.55704 -10.26323 -9.96819 -9.90003 -9.58332 -9.16921 -9.12649 -9.06434 -7.29129 -6.07637 -3.43164 1.78981 2.41450 2.55484 2.61391 3.24203 3.29560 3.31505 3.33266 4.19359 4.33311 4.39049 4.46239 4.58204 4.68615 4.70949 4.77423 4.85014 4.86629 4.91776 5.11551 5.13131 5.17284 5.19174 5.33646 5.37730 5.40924 5.47865 5.49436 5.55621 5.59349 5.63825 5.68721 5.73667 5.76706 5.85642 5.92034 6.01972 6.06537 6.07652 6.13009 6.13487 6.26689 6.29104 6.50630 6.76581 6.99879 7.13288 7.38976 7.64625 8.11365 8.70882 8.72597 9.38843 10.16070 11.09564 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.001970 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.418559 B =14207.386577 C =15362.230204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.100 4.100 5 C -0.110 4.110 6 H 0.097 0.903 7 C -0.147 4.147 8 C 0.518 3.482 9 O -0.542 6.542 10 N -0.723 5.723 11 C 0.214 3.786 12 C -0.063 4.063 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.233 4.233 19 H 0.087 0.913 20 C 0.000 4.000 21 N -0.919 5.919 22 Si 0.919 3.081 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.267 5.267 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.402 0.598 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.191 0.809 45 H 0.132 0.868 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.786 -12.227 -8.396 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.132 4.132 6 H 0.115 0.885 7 C -0.204 4.204 8 C 0.304 3.696 9 O -0.419 6.419 10 N -0.375 5.375 11 C 0.089 3.911 12 C -0.202 4.202 13 C -0.169 4.169 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.360 4.360 19 H 0.105 0.895 20 C -0.198 4.198 21 N -0.565 5.565 22 Si 0.749 3.251 23 H -0.213 1.213 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.237 0.763 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.208 0.792 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.075 -11.967 -9.430 21.434 hybrid contribution 0.021 0.523 1.964 2.033 sum -15.055 -11.444 -7.465 20.331 Atomic orbital electron populations 1.21781 0.96001 1.01514 1.01738 1.21525 0.95661 0.96946 1.02180 1.21697 0.95156 0.96911 1.02165 1.21415 0.94708 0.94096 1.03595 1.21337 0.91749 0.99443 1.00646 0.88522 1.21843 1.02365 1.00360 0.95863 1.20668 0.89964 0.83338 0.75611 1.90701 1.70331 1.31367 1.49515 1.46089 1.07544 1.09000 1.74885 1.19273 0.79547 0.88875 1.03366 1.21736 1.09643 0.98485 0.90298 1.23503 1.04804 0.86493 1.02073 1.47915 1.39076 1.11823 1.06907 1.25293 0.99111 0.86428 0.91662 1.22745 1.00883 0.90198 0.82495 1.45666 1.36766 1.25307 1.24736 1.19004 1.15673 1.03370 0.97960 0.89486 1.24852 0.98031 0.97910 0.99012 1.69759 1.23367 1.26410 1.36920 0.86014 0.77374 0.79722 0.82015 1.21282 1.21339 1.20322 1.22926 0.92824 0.97677 0.87292 1.78272 1.16982 1.17122 0.94419 1.75019 1.15259 0.97348 1.25785 0.92820 0.92891 0.92790 0.92006 0.91973 0.91659 0.92004 0.91097 0.91219 0.91890 0.92094 0.91177 0.76334 0.89701 0.89828 0.79245 0.85028 0.94102 0.89016 0.93075 0.91972 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.50 16 2 C -0.13 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.79 4.97 -26.74 -0.13 -0.92 16 4 C -0.10 -0.83 4.03 -26.74 -0.11 -0.94 16 5 C -0.11 -0.90 2.72 -91.77 -0.25 -1.15 16 6 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 7 C -0.15 -1.03 8.85 37.16 0.33 -0.70 16 8 C 0.52 5.87 7.15 -10.98 -0.08 5.79 16 9 O -0.54 -8.08 15.92 5.55 0.09 -7.99 16 10 N -0.72 -7.72 5.44 -61.47 -0.33 -8.05 16 11 C 0.21 2.56 6.23 -5.20 -0.03 2.53 16 12 C -0.06 -0.87 6.62 -82.78 -0.55 -1.42 16 13 C -0.01 -0.21 10.72 -17.05 -0.18 -0.40 16 14 N -0.26 -4.25 3.54 -56.31 -0.20 -4.45 16 15 C 0.08 1.31 5.14 -70.16 -0.36 0.95 16 16 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 17 N -0.60 -13.61 3.70 -177.93 -0.66 -14.27 16 18 C -0.23 -5.94 10.70 -15.06 -0.16 -6.10 16 19 H 0.09 2.14 7.83 -52.48 -0.41 1.73 16 20 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 21 N -0.92 -24.88 11.39 55.49 0.63 -24.25 16 22 Si 0.92 20.52 29.55 -169.99 -5.02 15.50 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.12 2.18 8.74 -2.97 -0.03 2.15 16 27 N -0.09 -1.53 13.16 60.35 0.79 -0.73 16 28 N -0.27 -4.40 12.41 33.29 0.41 -3.99 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.39 6.57 -51.92 -0.34 0.05 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.67 7.96 -51.92 -0.41 0.26 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.41 7.57 -51.93 -0.39 0.02 16 40 H 0.07 0.40 6.57 -51.93 -0.34 0.06 16 41 H 0.40 3.79 7.89 -40.82 -0.32 3.47 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.19 2.40 6.74 -52.48 -0.35 2.04 16 45 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 46 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 47 H 0.09 2.07 7.17 -51.93 -0.37 1.70 16 48 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -30.15 407.45 -7.93 -38.08 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.33 Total: 2.50 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.46 Total: 1.52 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.65 Total: -55.74 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.15 -7.93 -38.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107167185.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.969 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds