Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46708 * 2 1 4 4 C 1.53000 * 109.46708 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47081 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47160 * 55.00608 * 5 4 3 7 7 C 1.52996 * 109.47140 * 295.00256 * 5 4 3 8 8 C 1.50706 * 109.46908 * 175.00197 * 5 4 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 5 4 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 5 4 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 5 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47029 * 90.00090 * 22 20 18 24 24 H 1.48500 * 109.46724 * 210.00046 * 22 20 18 25 25 H 1.48499 * 109.47280 * 329.99803 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.09004 * 109.47145 * 299.99469 * 1 2 3 30 30 H 1.08997 * 109.47830 * 59.99695 * 1 2 3 31 31 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46706 * 240.00692 * 2 1 3 33 33 H 1.08993 * 109.47202 * 120.00664 * 2 1 3 34 34 H 1.08999 * 109.46972 * 60.00855 * 3 2 1 35 35 H 1.08993 * 109.47832 * 300.00278 * 3 2 1 36 36 H 1.09004 * 109.47145 * 60.00530 * 4 3 2 37 37 H 1.08997 * 109.47830 * 300.00304 * 4 3 2 38 38 H 1.09004 * 109.47057 * 299.99894 * 7 5 4 39 39 H 1.09003 * 109.47314 * 59.99665 * 7 5 4 40 40 H 1.08998 * 109.47145 * 180.02562 * 7 5 4 41 41 H 0.96996 * 120.00676 * 359.97438 * 10 8 5 42 42 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 43 43 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 44 44 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 45 45 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 46 46 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 47 47 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 48 48 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 50 50 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6450 3.4238 0.8431 7 6 3.6756 3.5695 -1.3060 8 6 5.5818 2.8868 0.1257 9 8 6.1849 1.8377 0.2055 10 7 6.2547 4.0543 0.1483 11 6 7.7146 4.0561 0.2698 12 6 8.2170 5.4769 0.2703 13 6 8.4860 6.2403 1.3551 14 7 8.9135 7.4331 0.8800 15 6 9.3257 8.5819 1.6903 16 6 9.5601 8.2422 3.1733 17 7 8.8601 9.5102 3.4683 18 6 8.8680 10.3881 4.5192 19 1 8.2469 11.2712 4.4899 20 6 9.6743 10.1430 5.6223 21 7 10.4315 9.0670 5.6578 22 14 9.6845 11.3402 7.0562 23 1 8.6448 10.9437 8.0395 24 1 11.0179 11.3184 7.7096 25 1 9.3992 12.7102 6.5593 26 6 8.1515 9.4515 2.1750 27 7 8.8953 7.3849 -0.4061 28 7 8.4813 6.2329 -0.8012 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9562 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.9336 0.9286 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 4.1106 3.0307 -2.1478 39 1 2.5893 3.5682 -1.3960 40 1 4.0393 4.5970 -1.3057 41 1 5.7724 4.8934 0.0841 42 1 8.1499 3.5175 -0.5719 43 1 8.0023 3.5683 1.2011 44 1 8.3846 5.9536 2.3914 45 1 10.1366 9.1523 1.2372 46 1 9.0236 7.3555 3.5111 47 1 10.6108 8.2414 3.4631 48 1 10.9946 8.8956 6.4288 49 1 8.0799 10.4144 1.6692 50 1 7.2001 8.9214 2.2171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107167186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = 90.924355 kcal Electronic energy + Delta-G solvation = -28068.009327 eV Core-core repulsion = 24133.624215 eV Total energy + Delta-G solvation = -3934.385113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.09685 -40.04571 -38.39859 -36.71117 -35.22302 -33.76020 -33.37286 -31.99736 -31.23129 -28.98302 -27.99474 -26.86341 -25.43047 -25.21536 -24.41117 -22.66319 -21.95538 -21.24619 -21.04745 -19.96765 -19.63873 -17.64081 -17.17168 -16.67890 -16.41837 -16.06262 -15.65883 -15.40464 -15.15016 -14.73784 -14.49677 -14.21186 -14.10997 -13.71937 -13.60936 -13.37615 -13.11005 -12.97977 -12.78654 -12.49382 -12.24332 -12.14089 -11.97983 -11.87359 -11.60383 -11.40992 -11.26345 -11.22278 -11.20828 -10.99175 -10.97880 -10.93817 -10.74349 -10.55649 -10.26272 -9.96832 -9.89938 -9.58263 -9.17293 -9.12495 -9.06263 -7.29072 -6.07580 -3.43104 1.78997 2.41502 2.55481 2.61369 3.24275 3.29618 3.31552 3.33307 4.19410 4.33167 4.39037 4.46171 4.58260 4.68616 4.71024 4.77527 4.85064 4.86139 4.91510 5.11863 5.13251 5.17512 5.18744 5.33524 5.37828 5.40510 5.48123 5.49714 5.55395 5.59254 5.63564 5.67694 5.73911 5.77083 5.84914 5.92169 6.02014 6.06339 6.07751 6.13111 6.13465 6.26697 6.29090 6.50658 6.76595 6.99941 7.13329 7.38998 7.64679 8.11366 8.70862 8.72646 9.38916 10.16138 11.09625 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013962 B = 0.001957 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.023858 B =14307.187093 C =15444.061714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.100 4.100 5 C -0.111 4.111 6 H 0.097 0.903 7 C -0.146 4.146 8 C 0.518 3.482 9 O -0.542 6.542 10 N -0.723 5.723 11 C 0.214 3.786 12 C -0.063 4.063 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.233 4.233 19 H 0.087 0.913 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.920 3.080 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.267 5.267 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.402 0.598 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.191 0.809 45 H 0.132 0.868 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 -12.753 -10.782 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.132 4.132 6 H 0.115 0.885 7 C -0.203 4.203 8 C 0.304 3.696 9 O -0.419 6.419 10 N -0.375 5.375 11 C 0.089 3.911 12 C -0.202 4.202 13 C -0.169 4.169 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.360 4.360 19 H 0.105 0.895 20 C -0.198 4.198 21 N -0.565 5.565 22 Si 0.749 3.251 23 H -0.213 1.213 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.237 0.763 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.208 0.792 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.303 -12.546 -11.697 21.707 hybrid contribution -0.308 0.631 1.965 2.087 sum -13.612 -11.915 -9.732 20.542 Atomic orbital electron populations 1.21781 0.95998 1.01515 1.01744 1.21522 0.95664 0.96944 1.02177 1.21696 0.95152 0.96913 1.02172 1.21416 0.94712 0.94087 1.03590 1.21343 0.91770 0.99460 1.00650 0.88467 1.21835 1.02290 1.00365 0.95858 1.20663 0.89966 0.83338 0.75614 1.90697 1.70346 1.31359 1.49503 1.46088 1.07480 1.09015 1.74935 1.19276 0.79523 0.88942 1.03321 1.21734 1.10204 0.98525 0.89693 1.23508 1.04825 0.86551 1.02006 1.47914 1.39794 1.12237 1.05774 1.25289 1.00813 0.84655 0.91735 1.22748 1.00675 0.89810 0.83097 1.45670 1.47269 1.22663 1.16883 1.19003 1.22337 1.00961 0.93694 0.89485 1.24852 0.98660 0.97930 0.98374 1.69759 1.29229 1.26630 1.30839 0.86015 0.77252 0.80030 0.81826 1.21278 1.21339 1.20323 1.22927 0.93231 0.97157 0.87401 1.78275 1.19198 1.15842 0.93483 1.75020 1.14246 0.97968 1.26167 0.92778 0.92827 0.92892 0.92013 0.91970 0.91960 0.91693 0.91274 0.91049 0.91976 0.91201 0.92094 0.76333 0.89840 0.89688 0.79239 0.85030 0.94101 0.89011 0.93075 0.91971 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.13 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.79 4.97 -26.73 -0.13 -0.92 16 4 C -0.10 -0.83 4.03 -26.73 -0.11 -0.94 16 5 C -0.11 -0.90 2.72 -91.77 -0.25 -1.15 16 6 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 7 C -0.15 -1.01 8.85 37.16 0.33 -0.68 16 8 C 0.52 5.87 7.15 -10.98 -0.08 5.79 16 9 O -0.54 -8.08 15.92 5.56 0.09 -7.99 16 10 N -0.72 -7.72 5.44 -61.47 -0.33 -8.05 16 11 C 0.21 2.56 6.23 -5.20 -0.03 2.53 16 12 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 13 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 14 N -0.26 -4.25 3.54 -56.31 -0.20 -4.45 16 15 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 16 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 17 N -0.60 -13.63 3.70 -177.89 -0.66 -14.29 16 18 C -0.23 -5.95 10.70 -15.06 -0.16 -6.11 16 19 H 0.09 2.14 7.83 -52.48 -0.41 1.73 16 20 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 21 N -0.92 -24.91 11.39 55.49 0.63 -24.27 16 22 Si 0.92 20.54 29.55 -169.99 -5.02 15.51 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.12 2.18 8.74 -2.96 -0.03 2.16 16 27 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 28 N -0.27 -4.39 12.41 33.29 0.41 -3.98 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.39 6.57 -51.93 -0.34 0.05 16 40 H 0.06 0.41 7.56 -51.93 -0.39 0.01 16 41 H 0.40 3.79 7.88 -40.82 -0.32 3.47 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.19 2.40 6.73 -52.49 -0.35 2.05 16 45 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 46 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 47 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 48 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 407.42 15.07 6.14 6.14 Total: -1.00 -30.16 407.42 -7.93 -38.10 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.33 Total: 2.49 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.46 Total: 1.52 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.65 Total: -55.78 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.16 -7.93 -38.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107167186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.021 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds