Wall clock time and date at job start Tue Mar 31 2020 20:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47438 * 2 1 4 4 C 1.53004 * 109.47055 * 59.99533 * 3 2 1 5 5 C 1.53001 * 109.47197 * 300.00159 * 3 2 1 6 6 C 1.53000 * 109.47438 * 180.02562 * 3 2 1 7 7 C 1.50698 * 109.47126 * 180.02562 * 6 3 2 8 8 O 1.21280 * 119.99897 * 359.72195 * 7 6 3 9 9 N 1.34773 * 120.00135 * 180.02562 * 7 6 3 10 10 C 1.46497 * 120.00240 * 179.72093 * 9 7 6 11 11 C 1.50709 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75281 * 94.71435 * 11 10 9 13 13 N 1.35307 * 106.17571 * 179.85248 * 12 11 10 14 14 C 1.46498 * 125.87256 * 180.18707 * 13 12 11 15 15 C 1.53953 * 113.74065 * 14.03254 * 14 13 12 16 16 N 1.47814 * 86.03550 * 222.08605 * 15 14 13 17 17 C 1.36938 * 134.45258 * 204.63848 * 16 15 14 18 18 H 1.08004 * 119.99809 * 173.35146 * 17 16 15 19 19 C 1.38814 * 120.00108 * 353.35646 * 17 16 15 20 20 N 1.31619 * 119.99894 * 5.05940 * 19 17 16 21 21 Si 1.86797 * 119.99680 * 185.06207 * 19 17 16 22 22 H 1.48500 * 109.47256 * 94.98917 * 21 19 17 23 23 H 1.48502 * 109.47006 * 214.98490 * 21 19 17 24 24 H 1.48496 * 109.47407 * 334.98304 * 21 19 17 25 25 C 1.47575 * 91.05321 * 24.54975 * 16 15 14 26 26 N 1.28722 * 108.26411 * 0.41697 * 13 12 11 27 27 N 1.28630 * 110.17555 * 359.73383 * 26 13 12 28 28 H 1.09003 * 109.47038 * 300.00129 * 1 2 3 29 29 H 1.09000 * 109.46882 * 60.00035 * 1 2 3 30 30 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47038 * 239.99871 * 2 1 3 32 32 H 1.09003 * 109.47386 * 119.99874 * 2 1 3 33 33 H 1.08995 * 109.47089 * 180.02562 * 4 3 2 34 34 H 1.08996 * 109.47390 * 300.00481 * 4 3 2 35 35 H 1.09003 * 109.46745 * 60.00752 * 4 3 2 36 36 H 1.09003 * 109.46891 * 299.99892 * 5 3 2 37 37 H 1.09006 * 109.47470 * 59.99254 * 5 3 2 38 38 H 1.08995 * 109.47684 * 180.02562 * 5 3 2 39 39 H 1.09003 * 109.47038 * 59.99871 * 6 3 2 40 40 H 1.09000 * 109.46882 * 299.99965 * 6 3 2 41 41 H 0.97006 * 119.99964 * 359.72386 * 9 7 6 42 42 H 1.08999 * 109.47211 * 299.99637 * 10 9 7 43 43 H 1.09003 * 109.47239 * 60.00387 * 10 9 7 44 44 H 1.08006 * 126.91079 * 359.97438 * 12 11 10 45 45 H 1.09001 * 112.94786 * 145.62660 * 14 13 12 46 46 H 1.09004 * 113.76439 * 336.35129 * 15 14 13 47 47 H 1.08994 * 113.76870 * 107.74630 * 15 14 13 48 48 H 0.97004 * 119.99723 * 180.02562 * 20 19 17 49 49 H 1.08996 * 113.77255 * 221.15145 * 25 16 15 50 50 H 1.09005 * 113.87280 * 89.76648 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5301 2.1638 -1.2492 6 6 3.5701 1.4424 -0.0006 7 6 4.0724 2.8632 0.0000 8 8 3.2843 3.7850 -0.0042 9 7 5.3974 3.1095 -0.0009 10 6 5.8858 4.4907 -0.0065 11 6 7.3929 4.4907 -0.0071 12 6 8.2023 4.5756 -1.0885 13 7 9.4692 4.5417 -0.6146 14 6 10.6898 4.6102 -1.4218 15 6 10.4491 5.0683 -2.8717 16 7 11.4070 4.0103 -3.2565 17 6 12.2361 3.8108 -4.3279 18 1 12.9338 2.9863 -4.3247 19 6 12.1799 4.6682 -5.4182 20 7 11.4024 5.7295 -5.3814 21 14 13.2079 4.3156 -6.9375 22 1 12.3881 3.5732 -7.9285 23 1 13.6654 5.5964 -7.5338 24 1 14.3874 3.4971 -6.5582 25 6 11.1128 3.2571 -2.0221 26 7 9.4178 4.4340 0.6671 27 7 8.1937 4.4010 1.0608 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8930 3.1915 1.2490 34 1 0.4400 2.1638 1.2492 35 1 1.8934 1.6499 2.1392 36 1 1.8934 1.6499 -2.1392 37 1 0.4400 2.1637 -1.2493 38 1 1.8938 3.1912 -1.2495 39 1 3.9330 0.9287 -0.8909 40 1 3.9337 0.9285 0.8891 41 1 6.0278 2.3722 0.0020 42 1 5.5226 5.0009 -0.8986 43 1 5.5225 5.0082 0.8814 44 1 7.8981 4.6564 -2.1216 45 1 11.5003 5.1413 -0.9225 46 1 9.4334 4.8913 -3.2255 47 1 10.8026 6.0786 -3.0776 48 1 11.3628 6.3285 -6.1434 49 1 11.9950 2.8240 -1.5508 50 1 10.2928 2.5461 -2.1239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107174598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:55 Heat of formation + Delta-G solvation = 87.274505 kcal Electronic energy + Delta-G solvation = -28567.237698 eV Core-core repulsion = 24632.694316 eV Total energy + Delta-G solvation = -3934.543382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.34953 -41.12660 -39.94641 -38.22195 -36.15141 -34.95052 -33.67046 -32.60666 -31.61219 -29.72606 -29.26107 -28.07797 -27.32529 -26.76590 -25.99616 -24.64217 -23.41874 -22.34645 -21.47427 -21.13901 -19.52522 -19.00813 -18.46557 -17.82105 -17.47301 -16.96859 -16.69308 -16.53355 -15.98289 -15.82887 -15.71912 -15.60167 -15.04677 -14.81442 -14.63703 -14.44813 -14.05416 -13.80375 -13.70727 -13.57344 -13.40121 -13.02557 -12.97450 -12.80022 -12.70072 -12.64390 -12.61813 -12.41445 -12.18993 -12.08003 -11.87328 -11.77182 -11.75347 -11.72654 -11.35824 -11.27737 -11.02269 -10.90573 -10.60246 -10.15463 -10.00490 -9.10048 -8.02866 -5.37213 0.57024 1.25677 1.29813 1.47704 1.50077 1.57425 1.74293 2.42201 2.47233 3.06045 3.12723 3.32056 3.33942 3.73906 3.78322 3.86536 3.92038 3.98765 4.00438 4.15993 4.26351 4.45512 4.50307 4.55672 4.58314 4.61558 4.69449 4.72933 4.73423 4.82414 4.90521 4.93706 5.00001 5.02216 5.04197 5.09100 5.16682 5.17709 5.23214 5.29571 5.31219 5.36980 5.38626 5.53083 5.65581 5.66248 5.76313 5.78632 6.59932 6.79736 7.34313 7.46142 7.48105 8.33775 9.14562 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.002075 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.855309 B =13490.151770 C =14588.968955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.045 4.045 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.130 4.130 7 C 0.513 3.487 8 O -0.562 6.562 9 N -0.720 5.720 10 C 0.220 3.780 11 C -0.048 4.048 12 C -0.014 4.014 13 N -0.269 5.269 14 C 0.104 3.896 15 C 0.168 3.832 16 N -0.628 5.628 17 C -0.239 4.239 18 H 0.091 0.909 19 C -0.055 4.055 20 N -0.947 5.947 21 Si 0.978 3.022 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.125 3.875 26 N -0.109 5.109 27 N -0.282 5.282 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.409 0.591 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.206 0.794 45 H 0.139 0.861 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.253 0.747 49 H 0.076 0.924 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.983 -10.073 10.175 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.046 4.046 4 C -0.208 4.208 5 C -0.210 4.210 6 C -0.170 4.170 7 C 0.302 3.698 8 O -0.441 6.441 9 N -0.373 5.373 10 C 0.095 3.905 11 C -0.187 4.187 12 C -0.168 4.168 13 N -0.061 5.061 14 C 0.002 3.998 15 C 0.042 3.958 16 N -0.355 5.355 17 C -0.366 4.366 18 H 0.109 0.891 19 C -0.250 4.250 20 N -0.594 5.594 21 Si 0.806 3.194 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.191 1.191 25 C -0.001 4.001 26 N -0.087 5.087 27 N -0.148 5.148 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.245 0.755 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.223 0.777 45 H 0.156 0.844 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.503 -9.447 11.185 22.061 hybrid contribution 0.466 0.073 -2.023 2.077 sum -16.037 -9.374 9.163 20.712 Atomic orbital electron populations 1.21878 0.95746 1.01738 1.01936 1.21564 0.96264 0.94486 1.02511 1.20279 0.92367 0.95864 0.96069 1.22087 1.00962 1.01350 0.96429 1.22105 1.00957 1.01448 0.96453 1.21843 0.96909 0.92217 1.06012 1.21144 0.81312 0.92688 0.74701 1.90593 1.55162 1.47858 1.50522 1.46076 1.07447 1.08400 1.75362 1.19210 0.83353 0.84391 1.03583 1.21967 0.97558 1.10322 0.88898 1.23820 0.83382 1.06702 1.02873 1.47714 1.08326 1.44175 1.05893 1.24722 0.83574 1.01372 0.90170 1.22561 0.93659 0.94927 0.84680 1.45889 1.45600 1.22507 1.21470 1.19338 1.12632 1.11451 0.93227 0.89082 1.25626 1.01104 0.97388 1.00834 1.69929 1.43200 1.14868 1.31409 0.85073 0.78282 0.76790 0.79260 1.21407 1.22198 1.19051 1.23017 0.99290 0.92389 0.85375 1.78280 1.15856 1.20713 0.93876 1.75006 0.95834 1.17010 1.26954 0.92667 0.92761 0.92256 0.91356 0.91237 0.92263 0.92607 0.92953 0.93056 0.92634 0.92141 0.87164 0.87188 0.75522 0.88938 0.90484 0.77726 0.84367 0.93479 0.92173 0.93765 0.90576 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.21 71.98 0.66 -1.13 16 2 C -0.11 -1.27 4.99 30.59 0.15 -1.12 16 3 C -0.05 -0.68 0.54 -52.18 -0.03 -0.71 16 4 C -0.15 -2.62 7.82 71.98 0.56 -2.06 16 5 C -0.15 -2.70 7.82 71.98 0.56 -2.14 16 6 C -0.13 -1.76 4.77 29.85 0.14 -1.62 16 7 C 0.51 10.14 7.24 87.66 0.63 10.78 16 8 O -0.56 -14.69 11.35 -3.03 -0.03 -14.72 16 9 N -0.72 -13.51 5.55 -466.78 -2.59 -16.10 16 10 C 0.22 4.80 6.23 85.64 0.53 5.33 16 11 C -0.05 -1.25 6.62 41.60 0.28 -0.98 16 12 C -0.01 -0.39 10.72 83.49 0.89 0.51 16 13 N -0.27 -8.19 3.54 -332.01 -1.18 -9.37 16 14 C 0.10 3.39 5.14 46.75 0.24 3.63 16 15 C 0.17 6.74 6.81 86.44 0.59 7.33 16 16 N -0.63 -28.11 3.70 -716.62 -2.65 -30.76 16 17 C -0.24 -12.04 10.70 84.03 0.90 -11.14 16 18 H 0.09 4.39 7.83 -2.91 -0.02 4.36 16 19 C -0.06 -2.87 5.50 84.86 0.47 -2.40 16 20 N -0.95 -51.94 11.51 21.65 0.25 -51.69 16 21 Si 0.98 42.12 29.56 68.60 2.03 44.15 16 22 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 C 0.13 4.33 8.74 86.49 0.76 5.09 16 26 N -0.11 -3.57 13.17 37.02 0.49 -3.09 16 27 N -0.28 -8.81 12.41 -48.59 -0.60 -9.42 16 28 H 0.05 0.66 6.43 -2.39 -0.02 0.64 16 29 H 0.05 0.66 6.43 -2.39 -0.02 0.65 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.35 5.52 -2.39 -0.01 1.34 16 34 H 0.05 0.91 6.43 -2.39 -0.02 0.89 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.05 0.93 6.43 -2.38 -0.02 0.91 16 38 H 0.06 1.39 5.50 -2.39 -0.01 1.38 16 39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.41 6.52 8.46 -92.70 -0.78 5.74 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.21 4.80 6.74 -2.91 -0.02 4.78 16 45 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 46 H 0.05 1.84 6.31 -2.38 -0.02 1.82 16 47 H 0.06 2.75 7.37 -2.39 -0.02 2.73 16 48 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -62.77 394.41 3.22 -59.55 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.17 Total: 22.06 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 7.34 Total: 9.38 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -6.28 Total: -120.42 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.03 Total: -14.72 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -62.77 3.22 -59.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107174598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.823 kcal (2) G-P(sol) polarization free energy of solvation -62.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds