Wall clock time and date at job start Tue Mar 31 2020 20:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47501 * 2 1 4 4 C 1.53000 * 109.46889 * 119.99892 * 2 1 3 5 5 C 1.52998 * 109.47438 * 174.99841 * 4 2 1 6 6 C 1.53000 * 109.47438 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47126 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99897 * 359.72195 * 7 6 5 9 9 N 1.34773 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00240 * 179.72093 * 9 7 6 11 11 C 1.50709 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75281 * 94.71435 * 11 10 9 13 13 N 1.35307 * 106.17571 * 179.85248 * 12 11 10 14 14 C 1.46498 * 125.87256 * 180.18707 * 13 12 11 15 15 C 1.53953 * 113.74065 * 14.03254 * 14 13 12 16 16 N 1.47814 * 86.03550 * 222.08605 * 15 14 13 17 17 C 1.36938 * 134.45258 * 204.63848 * 16 15 14 18 18 H 1.08004 * 119.99809 * 173.35146 * 17 16 15 19 19 C 1.38814 * 120.00108 * 353.35646 * 17 16 15 20 20 N 1.31619 * 119.99894 * 5.05940 * 19 17 16 21 21 Si 1.86797 * 119.99680 * 185.06207 * 19 17 16 22 22 H 1.48500 * 109.47256 * 94.98917 * 21 19 17 23 23 H 1.48502 * 109.47006 * 214.98490 * 21 19 17 24 24 H 1.48496 * 109.47407 * 334.98304 * 21 19 17 25 25 C 1.47575 * 91.05321 * 24.54975 * 16 15 14 26 26 N 1.28722 * 108.26411 * 0.41697 * 13 12 11 27 27 N 1.28630 * 110.17555 * 359.73383 * 26 13 12 28 28 H 1.09003 * 109.46906 * 300.00795 * 1 2 3 29 29 H 1.09006 * 109.46965 * 60.00100 * 1 2 3 30 30 H 1.08994 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47100 * 239.99498 * 2 1 3 32 32 H 1.08995 * 109.47354 * 59.99654 * 3 2 1 33 33 H 1.09002 * 109.47082 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.46929 * 299.99922 * 3 2 1 35 35 H 1.09003 * 109.47038 * 54.99712 * 4 2 1 36 36 H 1.09003 * 109.47386 * 294.99715 * 4 2 1 37 37 H 1.09003 * 109.47112 * 59.99916 * 5 4 2 38 38 H 1.09000 * 109.47056 * 299.99859 * 5 4 2 39 39 H 1.09003 * 109.47038 * 59.99871 * 6 5 4 40 40 H 1.09000 * 109.46882 * 299.99965 * 6 5 4 41 41 H 0.97006 * 119.99964 * 359.72386 * 9 7 6 42 42 H 1.08999 * 109.47211 * 299.99637 * 10 9 7 43 43 H 1.09003 * 109.47239 * 60.00387 * 10 9 7 44 44 H 1.08006 * 126.91079 * 359.97438 * 12 11 10 45 45 H 1.09001 * 112.94786 * 145.62660 * 14 13 12 46 46 H 1.09004 * 113.76439 * 336.35129 * 15 14 13 47 47 H 1.08994 * 113.76870 * 107.74630 * 15 14 13 48 48 H 0.97004 * 119.99723 * 180.02562 * 20 19 17 49 49 H 1.08996 * 113.77255 * 221.15145 * 25 16 15 50 50 H 1.09005 * 113.87280 * 89.76648 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.8311 1.1881 6 6 4.0746 -1.5529 2.4371 7 6 5.5766 -1.6606 2.3771 8 8 6.1793 -1.2093 1.4263 9 7 6.2495 -2.2637 3.3770 10 6 7.7090 -2.3738 3.3157 11 6 8.2112 -3.0847 4.5460 12 6 8.4719 -4.4073 4.6674 13 7 8.9012 -4.5919 5.9372 14 6 9.3061 -5.8692 6.5295 15 6 9.5369 -6.9862 5.4955 16 7 8.8308 -7.8711 6.4460 17 6 8.8317 -9.2199 6.6823 18 1 8.2902 -9.6205 7.5266 19 6 9.5287 -10.0723 5.8370 20 7 10.2694 -9.5774 4.8680 21 14 9.4153 -11.9216 6.0746 22 1 8.3633 -12.4717 5.1824 23 1 10.7217 -12.5444 5.7420 24 1 9.0708 -12.2189 7.4881 25 6 8.1268 -6.7176 7.0390 26 7 8.8883 -3.4530 6.5370 27 7 8.4816 -2.5336 5.7346 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6768 1.9563 0.8899 33 1 3.1301 1.4423 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6052 -1.7198 1.2952 36 1 1.7516 -0.1583 2.1370 37 1 3.9995 0.1674 1.1422 38 1 3.8531 -1.3941 0.3004 39 1 3.6399 -2.5515 2.4825 40 1 3.7862 -0.9903 3.3250 41 1 5.7673 -2.6250 4.1372 42 1 7.9938 -2.9390 2.4283 43 1 8.1469 -1.3768 3.2677 44 1 8.3614 -5.1630 3.9037 45 1 10.1160 -5.7652 7.2514 46 1 9.0030 -6.8338 4.5575 47 1 10.5867 -7.2420 5.3522 48 1 10.7561 -10.1730 4.2771 49 1 8.0528 -6.7593 8.1256 50 1 7.1774 -6.4848 6.5567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107213462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:08 Heat of formation + Delta-G solvation = 89.458889 kcal Electronic energy + Delta-G solvation = -27709.706790 eV Core-core repulsion = 23775.258131 eV Total energy + Delta-G solvation = -3934.448660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.09864 -39.81556 -38.39704 -37.31640 -35.25347 -33.44466 -33.09300 -32.00988 -31.25256 -28.20720 -27.92076 -27.48002 -26.17970 -25.27889 -24.40931 -22.52894 -21.95243 -21.09082 -20.42960 -20.24321 -19.65622 -17.63057 -17.14679 -16.67073 -16.37446 -16.21577 -15.61400 -15.35928 -15.13274 -14.80281 -14.52761 -14.33452 -14.09827 -13.93835 -13.51696 -13.35371 -13.08159 -12.93589 -12.57278 -12.42023 -12.16185 -12.15580 -11.98891 -11.91160 -11.86691 -11.41447 -11.27836 -11.20539 -11.00827 -10.97978 -10.96575 -10.89529 -10.70859 -10.55880 -10.24968 -10.05673 -9.93400 -9.58047 -9.17525 -9.11905 -9.06952 -7.28199 -6.09435 -3.44059 1.79021 2.41658 2.55887 2.61335 3.23813 3.29716 3.31603 3.34758 4.19453 4.33488 4.40407 4.51788 4.54920 4.68217 4.70482 4.71735 4.85545 4.90432 4.98307 5.12533 5.17641 5.23743 5.26474 5.30309 5.35989 5.38982 5.44486 5.50365 5.54343 5.55503 5.61860 5.64378 5.73743 5.83160 5.87250 5.93139 6.02226 6.08644 6.10974 6.13436 6.14824 6.26700 6.29137 6.51100 6.74137 6.99524 7.13742 7.38932 7.64023 8.11707 8.70649 8.72091 9.38136 10.16300 11.08294 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.001821 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.639363 B =15372.338631 C =16615.934701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.513 3.487 8 O -0.543 6.543 9 N -0.725 5.725 10 C 0.215 3.785 11 C -0.063 4.063 12 C -0.015 4.015 13 N -0.265 5.265 14 C 0.076 3.924 15 C 0.166 3.834 16 N -0.598 5.598 17 C -0.235 4.235 18 H 0.088 0.912 19 C 0.001 3.999 20 N -0.917 5.917 21 Si 0.918 3.082 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.268 5.268 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.403 0.597 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.191 0.809 45 H 0.132 0.868 46 H 0.043 0.957 47 H 0.088 0.912 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.117 16.241 -6.306 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.154 4.154 5 C -0.143 4.143 6 C -0.181 4.181 7 C 0.300 3.700 8 O -0.421 6.421 9 N -0.377 5.377 10 C 0.089 3.911 11 C -0.202 4.202 12 C -0.169 4.169 13 N -0.057 5.057 14 C -0.026 4.026 15 C 0.039 3.961 16 N -0.325 5.325 17 C -0.361 4.361 18 H 0.106 0.894 19 C -0.197 4.197 20 N -0.562 5.562 21 Si 0.747 3.253 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.008 4.008 26 N -0.068 5.068 27 N -0.134 5.134 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.237 0.763 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.208 0.792 45 H 0.150 0.850 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.256 16.930 -5.682 22.240 hybrid contribution -0.398 -2.012 -0.440 2.098 sum -13.654 14.918 -6.122 21.129 Atomic orbital electron populations 1.21850 0.95393 1.01637 1.01642 1.21113 0.95479 0.96534 0.98526 1.21907 1.01554 0.95844 1.01484 1.21681 0.95260 1.00525 0.97891 1.21406 0.94695 1.01417 0.96813 1.21705 0.91766 1.03356 1.01301 1.20735 0.90213 0.77170 0.81920 1.90705 1.70499 1.47762 1.33103 1.46112 1.07576 1.60094 1.23968 1.19271 0.79562 1.00253 0.91964 1.21741 1.10195 0.91747 0.96491 1.23505 1.04761 0.98690 0.89899 1.47912 1.39820 1.09448 1.08544 1.25317 1.00890 0.75481 1.00887 1.22694 1.00300 0.82112 0.90948 1.45651 1.46530 1.01823 1.38467 1.19008 1.28889 0.78774 1.09458 0.89448 1.24884 0.99161 0.98683 0.96994 1.69782 1.32227 1.34232 1.19959 0.86019 0.77320 0.84072 0.77870 1.21282 1.21404 1.20267 1.22931 0.93174 0.86004 0.98651 1.78273 1.19321 0.87756 1.21468 1.75018 1.14295 1.23803 1.00310 0.92767 0.92846 0.92752 0.91170 0.92813 0.92122 0.92984 0.91897 0.91914 0.90923 0.91195 0.88857 0.88938 0.76321 0.89705 0.89847 0.79226 0.85050 0.93907 0.89418 0.93063 0.92010 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.50 16 2 C -0.10 -0.63 2.92 -90.62 -0.26 -0.90 16 3 C -0.15 -0.98 8.95 37.15 0.33 -0.64 16 4 C -0.12 -0.74 4.68 -26.73 -0.13 -0.87 16 5 C -0.11 -0.84 4.26 -26.73 -0.11 -0.96 16 6 C -0.14 -1.08 5.70 -27.88 -0.16 -1.23 16 7 C 0.51 5.68 7.83 -10.99 -0.09 5.60 16 8 O -0.54 -8.01 15.98 5.56 0.09 -7.92 16 9 N -0.73 -7.62 5.55 -61.47 -0.34 -7.97 16 10 C 0.21 2.55 6.23 -5.19 -0.03 2.52 16 11 C -0.06 -0.87 6.62 -82.77 -0.55 -1.42 16 12 C -0.01 -0.21 10.72 -17.05 -0.18 -0.40 16 13 N -0.26 -4.25 3.54 -56.29 -0.20 -4.45 16 14 C 0.08 1.29 5.14 -70.13 -0.36 0.93 16 15 C 0.17 3.36 6.81 -2.83 -0.02 3.34 16 16 N -0.60 -13.61 3.70 -177.86 -0.66 -14.27 16 17 C -0.23 -5.98 10.70 -15.06 -0.16 -6.14 16 18 H 0.09 2.15 7.83 -52.48 -0.41 1.74 16 19 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 20 N -0.92 -24.83 11.51 55.49 0.64 -24.19 16 21 Si 0.92 20.51 29.56 -169.99 -5.02 15.48 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.12 2.17 8.74 -2.97 -0.03 2.15 16 26 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 27 N -0.27 -4.40 12.41 33.29 0.41 -3.99 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.65 6.52 -51.93 -0.34 0.32 16 38 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.40 3.68 8.46 -40.82 -0.35 3.33 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.19 2.41 6.74 -52.48 -0.35 2.06 16 45 H 0.13 2.15 8.14 -51.93 -0.42 1.73 16 46 H 0.04 0.85 6.31 -51.93 -0.33 0.52 16 47 H 0.09 1.97 7.37 -51.93 -0.38 1.59 16 48 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 409.05 15.07 6.16 6.16 Total: -1.00 -30.31 409.05 -8.02 -38.33 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.40 Total: 2.14 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.50 Total: 1.40 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.65 Total: -55.60 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.31 -8.02 -38.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107213462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.785 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds