Wall clock time and date at job start Tue Mar 31 2020 20:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46784 * 2 1 4 4 C 1.52999 * 109.46561 * 240.00286 * 2 1 3 5 5 C 1.52995 * 109.47086 * 120.00357 * 2 1 3 6 6 C 1.52990 * 109.47353 * 60.00147 * 5 2 1 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 2 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.36935 * 134.45249 * 204.64331 * 16 15 14 18 18 H 1.08003 * 120.00142 * 179.86840 * 17 16 15 19 19 C 1.38809 * 120.00476 * 359.86834 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47196 * 120.00235 * 21 19 17 24 24 H 1.48503 * 109.47010 * 239.99921 * 21 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 1.08998 * 109.46738 * 299.99876 * 1 2 3 29 29 H 1.08993 * 109.47049 * 59.99541 * 1 2 3 30 30 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46800 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47500 * 300.00050 * 3 2 1 33 33 H 1.08998 * 109.47382 * 60.00518 * 3 2 1 34 34 H 1.08994 * 109.47589 * 299.99709 * 4 2 1 35 35 H 1.09007 * 109.47406 * 60.00144 * 4 2 1 36 36 H 1.09005 * 109.47141 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47142 * 299.99520 * 5 2 1 38 38 H 1.09011 * 109.46657 * 180.02562 * 5 2 1 39 39 H 1.08998 * 109.47508 * 59.99597 * 6 5 2 40 40 H 1.09002 * 109.47337 * 299.99883 * 6 5 2 41 41 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 42 42 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 43 43 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 44 44 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 45 45 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 46 46 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 47 47 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 48 48 H 0.96996 * 120.00067 * 180.02562 * 20 19 17 49 49 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 50 50 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1637 1.2491 7 6 2.0330 -2.8744 2.4792 8 8 2.7310 -2.2852 3.2771 9 7 1.7080 -4.1650 2.6921 10 6 2.1918 -4.8540 3.8910 11 6 1.6855 -6.2734 3.8934 12 6 2.3380 -7.3667 3.4342 13 7 1.5083 -8.4155 3.6412 14 6 1.7905 -9.8128 3.3040 15 6 3.2715 -10.0866 2.9852 16 7 2.7714 -10.9272 1.8770 17 6 3.2765 -11.9892 1.1756 18 1 2.6930 -12.4429 0.3880 19 6 4.5384 -12.4829 1.4767 20 7 5.2493 -11.9305 2.4368 21 14 5.2277 -13.9313 0.5193 22 1 4.2387 -14.3673 -0.4989 23 1 6.4868 -13.5248 -0.1550 24 1 5.5054 -15.0536 1.4513 25 6 1.5090 -10.1641 1.8318 26 7 0.4265 -7.9735 4.1809 27 7 0.5005 -6.6997 4.3445 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7209 -1.2496 37 1 1.6768 -0.2075 2.1392 38 1 3.1302 -0.7209 1.2493 39 1 1.8934 -2.6775 0.3591 40 1 0.4401 -2.1638 1.2491 41 1 1.1500 -4.6362 2.0538 42 1 3.2818 -4.8570 3.8933 43 1 1.8281 -4.3370 4.7790 44 1 3.3235 -7.3965 2.9934 45 1 1.3568 -10.5172 4.0139 46 1 3.8201 -9.2046 2.6547 47 1 3.7919 -10.6463 3.7625 48 1 6.1313 -12.2752 2.6470 49 1 0.6249 -10.7857 1.6897 50 1 1.5368 -9.3047 1.1620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107221400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:13 Heat of formation + Delta-G solvation = 95.559377 kcal Electronic energy + Delta-G solvation = -28194.460478 eV Core-core repulsion = 24260.276355 eV Total energy + Delta-G solvation = -3934.184123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.09747 -39.94449 -38.40976 -37.95891 -35.23069 -33.43673 -32.10621 -31.74370 -30.89153 -28.00676 -27.61047 -27.59129 -27.00974 -25.32847 -24.48060 -24.14649 -21.96306 -21.11733 -20.53494 -19.65359 -18.86824 -17.69568 -17.20295 -16.68102 -16.36121 -15.97184 -15.60680 -15.16077 -14.93286 -14.85004 -14.62197 -14.33828 -14.14033 -13.89793 -13.51503 -13.29993 -12.98738 -12.86972 -12.77545 -12.28245 -12.16233 -12.12052 -12.07809 -11.97616 -11.87133 -11.43030 -11.38749 -11.21026 -11.01229 -10.97694 -10.88117 -10.84037 -10.78609 -10.55243 -10.23588 -10.04807 -9.91965 -9.58550 -9.17160 -9.13303 -9.07098 -7.29193 -6.07932 -3.43438 1.78957 2.41778 2.56517 2.61408 3.23723 3.29638 3.32051 3.35213 4.19089 4.33410 4.41337 4.42610 4.51006 4.68511 4.70942 4.77668 4.89837 4.93118 5.03134 5.12579 5.17405 5.23217 5.30041 5.31793 5.37326 5.38967 5.47132 5.50809 5.58577 5.60614 5.62585 5.72042 5.73842 5.74480 5.87887 5.97607 6.01888 6.07549 6.10269 6.12343 6.13407 6.26735 6.29297 6.50558 6.76544 6.99830 7.13333 7.39347 7.64594 8.12357 8.70776 8.72514 9.38623 10.15843 11.09360 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.002004 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.018433 B =13969.952242 C =15065.124262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.091 4.091 6 C -0.145 4.145 7 C 0.513 3.487 8 O -0.544 6.544 9 N -0.725 5.725 10 C 0.214 3.786 11 C -0.063 4.063 12 C -0.015 4.015 13 N -0.265 5.265 14 C 0.077 3.923 15 C 0.163 3.837 16 N -0.598 5.598 17 C -0.232 4.232 18 H 0.088 0.912 19 C -0.001 4.001 20 N -0.919 5.919 21 Si 0.920 3.080 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.287 1.287 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.268 5.268 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.402 0.598 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.191 0.809 45 H 0.132 0.868 46 H 0.042 0.958 47 H 0.092 0.908 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 20.213 -3.993 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.129 4.129 6 C -0.185 4.185 7 C 0.300 3.700 8 O -0.421 6.421 9 N -0.378 5.378 10 C 0.089 3.911 11 C -0.202 4.202 12 C -0.169 4.169 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.359 4.359 18 H 0.106 0.894 19 C -0.199 4.199 20 N -0.565 5.565 21 Si 0.749 3.251 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.214 1.214 25 C -0.007 4.007 26 N -0.068 5.068 27 N -0.134 5.134 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.236 0.764 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.208 0.792 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.723 19.938 -2.936 21.582 hybrid contribution 1.277 -0.989 -1.274 2.057 sum -6.446 18.949 -4.210 20.453 Atomic orbital electron populations 1.21957 0.94639 1.01925 1.01742 1.20592 0.95679 0.95629 0.95331 1.21852 1.01097 0.95209 1.01644 1.21960 1.01181 1.00345 0.96819 1.21382 1.01379 0.92837 0.97344 1.21837 1.02829 0.97349 0.96462 1.20760 0.80134 0.81350 0.87797 1.90704 1.38000 1.66024 1.47374 1.46110 1.54081 1.12233 1.25339 1.19268 0.98615 0.84666 0.88505 1.21741 0.94205 0.96418 1.07789 1.23507 1.00532 0.86625 1.06224 1.47913 1.10602 1.10171 1.37044 1.25289 1.03050 0.74915 0.99244 1.22748 0.87870 0.93747 0.91962 1.45675 1.14563 1.32631 1.39644 1.19049 0.99284 1.04276 1.13283 0.89426 1.24862 0.96489 0.99747 0.98804 1.69771 1.12303 1.42609 1.31778 0.85942 0.78835 0.81357 0.78969 1.20202 1.21417 1.21363 1.22927 0.92270 0.95021 0.90501 1.78274 1.07957 1.05459 1.15114 1.75019 1.17961 1.02312 1.18131 0.92579 0.92773 0.92345 0.92583 0.92750 0.92614 0.92323 0.92767 0.92527 0.91163 0.91110 0.88629 0.88674 0.76352 0.89706 0.89858 0.79239 0.85027 0.94092 0.89013 0.93124 0.91967 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.12 37.16 0.30 -0.58 16 2 C -0.07 -0.48 0.80 -154.51 -0.12 -0.60 16 3 C -0.14 -0.89 8.47 37.16 0.31 -0.58 16 4 C -0.15 -0.91 8.12 37.16 0.30 -0.61 16 5 C -0.09 -0.75 3.56 -26.74 -0.10 -0.84 16 6 C -0.15 -1.13 4.99 -27.89 -0.14 -1.27 16 7 C 0.51 5.71 7.83 -10.98 -0.09 5.62 16 8 O -0.54 -8.04 15.98 5.55 0.09 -7.95 16 9 N -0.73 -7.64 5.55 -61.47 -0.34 -7.98 16 10 C 0.21 2.56 6.23 -5.19 -0.03 2.52 16 11 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 12 C -0.02 -0.22 10.72 -17.04 -0.18 -0.40 16 13 N -0.26 -4.26 3.54 -56.31 -0.20 -4.46 16 14 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 15 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 16 N -0.60 -13.63 3.70 -177.90 -0.66 -14.29 16 17 C -0.23 -5.92 10.70 -15.06 -0.16 -6.08 16 18 H 0.09 2.16 7.83 -52.48 -0.41 1.75 16 19 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 20 N -0.92 -24.92 11.39 55.49 0.63 -24.29 16 21 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.12 2.18 8.74 -2.97 -0.03 2.16 16 26 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 27 N -0.27 -4.40 12.41 33.29 0.41 -3.99 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.07 0.66 8.10 -51.92 -0.42 0.24 16 39 H 0.10 0.62 6.43 -51.93 -0.33 0.29 16 40 H 0.10 0.61 6.43 -51.93 -0.33 0.28 16 41 H 0.40 3.68 8.46 -40.82 -0.35 3.33 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.19 2.40 6.74 -52.49 -0.35 2.05 16 45 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 46 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 47 H 0.09 2.08 7.16 -51.93 -0.37 1.70 16 48 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -30.35 403.49 -7.36 -37.71 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.19 Total: 2.35 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -0.95 Total: 2.03 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.64 Total: -55.74 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.35 -7.36 -37.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107221400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.268 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds