Wall clock time and date at job start Tue Mar 31 2020 20:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46784 * 2 1 4 4 C 1.52999 * 109.46561 * 240.00286 * 2 1 3 5 5 C 1.52995 * 109.47086 * 120.00357 * 2 1 3 6 6 C 1.52990 * 109.47353 * 60.00147 * 5 2 1 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 2 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.36935 * 134.45249 * 204.64331 * 16 15 14 18 18 H 1.08003 * 120.00142 * 179.86840 * 17 16 15 19 19 C 1.38809 * 120.00476 * 359.86834 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47196 * 120.00235 * 21 19 17 24 24 H 1.48503 * 109.47010 * 239.99921 * 21 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 1.08998 * 109.46738 * 299.99876 * 1 2 3 29 29 H 1.08993 * 109.47049 * 59.99541 * 1 2 3 30 30 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46800 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47500 * 300.00050 * 3 2 1 33 33 H 1.08998 * 109.47382 * 60.00518 * 3 2 1 34 34 H 1.08994 * 109.47589 * 299.99709 * 4 2 1 35 35 H 1.09007 * 109.47406 * 60.00144 * 4 2 1 36 36 H 1.09005 * 109.47141 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47142 * 299.99520 * 5 2 1 38 38 H 1.09011 * 109.46657 * 180.02562 * 5 2 1 39 39 H 1.08998 * 109.47508 * 59.99597 * 6 5 2 40 40 H 1.09002 * 109.47337 * 299.99883 * 6 5 2 41 41 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 42 42 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 43 43 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 44 44 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 45 45 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 46 46 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 47 47 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 48 48 H 0.96996 * 120.00067 * 180.02562 * 20 19 17 49 49 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 50 50 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1637 1.2491 7 6 2.0330 -2.8744 2.4792 8 8 2.7310 -2.2852 3.2771 9 7 1.7080 -4.1650 2.6921 10 6 2.1918 -4.8540 3.8910 11 6 1.6855 -6.2734 3.8934 12 6 2.3380 -7.3667 3.4342 13 7 1.5083 -8.4155 3.6412 14 6 1.7905 -9.8128 3.3040 15 6 3.2715 -10.0866 2.9852 16 7 2.7714 -10.9272 1.8770 17 6 3.2765 -11.9892 1.1756 18 1 2.6930 -12.4429 0.3880 19 6 4.5384 -12.4829 1.4767 20 7 5.2493 -11.9305 2.4368 21 14 5.2277 -13.9313 0.5193 22 1 4.2387 -14.3673 -0.4989 23 1 6.4868 -13.5248 -0.1550 24 1 5.5054 -15.0536 1.4513 25 6 1.5090 -10.1641 1.8318 26 7 0.4265 -7.9735 4.1809 27 7 0.5005 -6.6997 4.3445 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7209 -1.2496 37 1 1.6768 -0.2075 2.1392 38 1 3.1302 -0.7209 1.2493 39 1 1.8934 -2.6775 0.3591 40 1 0.4401 -2.1638 1.2491 41 1 1.1500 -4.6362 2.0538 42 1 3.2818 -4.8570 3.8933 43 1 1.8281 -4.3370 4.7790 44 1 3.3235 -7.3965 2.9934 45 1 1.3568 -10.5172 4.0139 46 1 3.8201 -9.2046 2.6547 47 1 3.7919 -10.6463 3.7625 48 1 6.1313 -12.2752 2.6470 49 1 0.6249 -10.7857 1.6897 50 1 1.5368 -9.3047 1.1620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107221400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:12 Heat of formation + Delta-G solvation = 76.827728 kcal Electronic energy + Delta-G solvation = -28195.272743 eV Core-core repulsion = 24260.276355 eV Total energy + Delta-G solvation = -3934.996388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.35556 -40.82353 -39.94316 -38.58001 -36.27199 -34.95527 -33.67243 -32.76854 -31.79531 -29.71282 -28.09559 -28.07607 -28.04182 -26.84442 -26.03092 -24.94893 -23.42187 -22.32964 -21.40905 -21.13312 -19.42526 -19.05632 -18.55502 -17.87997 -17.51133 -16.97976 -16.77415 -16.71428 -16.01994 -15.77228 -15.57967 -15.36092 -14.95918 -14.82587 -14.65493 -14.49844 -14.08350 -13.98050 -13.65503 -13.52988 -13.40625 -13.31906 -12.97033 -12.80703 -12.68867 -12.64229 -12.61506 -12.49014 -12.43260 -12.06753 -11.96520 -11.79016 -11.72946 -11.45203 -11.37825 -11.36060 -11.09382 -10.97651 -10.86458 -10.26971 -10.10657 -9.10973 -8.01312 -5.36522 0.56432 1.24514 1.29216 1.47879 1.49662 1.58301 1.68956 2.41651 2.44385 3.07425 3.12154 3.31214 3.33716 3.72403 3.76582 3.86329 3.91529 3.96559 3.99800 4.14545 4.15828 4.33753 4.44323 4.49819 4.57140 4.59598 4.68325 4.72108 4.73638 4.84467 4.88800 4.92173 4.98409 5.00684 5.05212 5.10008 5.10211 5.12265 5.16725 5.22222 5.30324 5.36799 5.38100 5.45371 5.58813 5.59183 5.65955 5.77216 6.54927 6.80370 7.26013 7.45494 7.48690 8.33482 9.15665 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.002004 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.018433 B =13969.952242 C =15065.124262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C -0.142 4.142 4 C -0.146 4.146 5 C -0.088 4.088 6 C -0.137 4.137 7 C 0.512 3.488 8 O -0.584 6.584 9 N -0.718 5.718 10 C 0.218 3.782 11 C -0.049 4.049 12 C -0.014 4.014 13 N -0.268 5.268 14 C 0.104 3.896 15 C 0.165 3.835 16 N -0.628 5.628 17 C -0.236 4.236 18 H 0.092 0.908 19 C -0.057 4.057 20 N -0.949 5.949 21 Si 0.979 3.021 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.126 3.874 26 N -0.108 5.108 27 N -0.281 5.281 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.412 0.588 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.207 0.793 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.076 0.924 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 20.694 -5.456 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.199 4.199 4 C -0.203 4.203 5 C -0.126 4.126 6 C -0.177 4.177 7 C 0.300 3.700 8 O -0.464 6.464 9 N -0.370 5.370 10 C 0.093 3.907 11 C -0.188 4.188 12 C -0.167 4.167 13 N -0.061 5.061 14 C 0.002 3.998 15 C 0.038 3.962 16 N -0.355 5.355 17 C -0.364 4.364 18 H 0.109 0.891 19 C -0.251 4.251 20 N -0.597 5.597 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.219 1.219 25 C 0.000 4.000 26 N -0.087 5.087 27 N -0.148 5.148 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.247 0.753 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.224 0.776 45 H 0.156 0.844 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.890 20.428 -4.417 22.712 hybrid contribution 1.576 -1.029 -0.791 2.041 sum -7.314 19.399 -5.208 21.376 Atomic orbital electron populations 1.21958 0.93938 1.02422 1.01914 1.20562 0.96178 0.95481 0.94666 1.21865 1.00859 0.95282 1.01909 1.21964 1.00902 1.00729 0.96711 1.21326 1.00382 0.93288 0.97619 1.21868 1.03853 0.96631 0.95307 1.21336 0.79281 0.81169 0.88204 1.90692 1.39923 1.66848 1.48973 1.46036 1.53896 1.12169 1.24948 1.19227 0.99020 0.83520 0.88971 1.21927 0.93210 0.97105 1.06536 1.23828 1.00907 0.86146 1.05809 1.47716 1.10956 1.09931 1.37479 1.24697 1.00478 0.75643 0.98977 1.22619 0.89586 0.93205 0.90741 1.45909 1.16467 1.32931 1.40172 1.19377 0.99255 1.04783 1.12980 0.89062 1.25604 0.97160 1.02310 1.00022 1.69922 1.12304 1.44064 1.33364 0.85003 0.77992 0.78435 0.77823 1.18840 1.21956 1.21939 1.23018 0.90909 0.94921 0.91173 1.78283 1.08427 1.05863 1.16098 1.75008 1.19078 1.02156 1.18535 0.92930 0.92133 0.91673 0.93019 0.91911 0.92923 0.91670 0.92141 0.93032 0.92647 0.92685 0.86748 0.86766 0.75269 0.88900 0.90517 0.77627 0.84449 0.93493 0.91848 0.93809 0.90570 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.12 71.98 0.58 -0.88 16 2 C -0.07 -0.81 0.80 -52.18 -0.04 -0.85 16 3 C -0.14 -1.68 8.47 71.98 0.61 -1.07 16 4 C -0.15 -1.54 8.12 71.98 0.58 -0.95 16 5 C -0.09 -1.37 3.56 30.59 0.11 -1.26 16 6 C -0.14 -1.87 4.99 29.85 0.15 -1.72 16 7 C 0.51 10.74 7.83 87.66 0.69 11.42 16 8 O -0.58 -17.12 15.98 -3.04 -0.05 -17.17 16 9 N -0.72 -13.84 5.55 -466.79 -2.59 -16.43 16 10 C 0.22 4.88 6.23 85.63 0.53 5.42 16 11 C -0.05 -1.27 6.61 41.60 0.28 -0.99 16 12 C -0.01 -0.36 10.72 83.49 0.89 0.53 16 13 N -0.27 -8.18 3.54 -332.06 -1.18 -9.35 16 14 C 0.10 3.40 5.14 46.75 0.24 3.64 16 15 C 0.16 6.61 6.90 86.44 0.60 7.21 16 16 N -0.63 -28.06 3.70 -716.75 -2.65 -30.71 16 17 C -0.24 -11.89 10.70 84.03 0.90 -10.99 16 18 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.06 -2.96 5.50 84.86 0.47 -2.49 16 20 N -0.95 -52.08 11.39 21.65 0.25 -51.83 16 21 Si 0.98 42.17 29.55 68.60 2.03 44.19 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 25 C 0.13 4.33 8.74 86.49 0.76 5.08 16 26 N -0.11 -3.56 13.17 37.02 0.49 -3.07 16 27 N -0.28 -8.82 12.41 -48.60 -0.60 -9.43 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.57 6.43 -2.39 -0.02 0.55 16 31 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.60 6.43 -2.39 -0.02 0.58 16 35 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 38 H 0.05 1.02 8.10 -2.38 -0.02 1.00 16 39 H 0.11 1.17 6.43 -2.39 -0.02 1.16 16 40 H 0.11 1.16 6.43 -2.39 -0.02 1.15 16 41 H 0.41 6.53 8.46 -92.71 -0.78 5.74 16 42 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.21 4.77 6.74 -2.91 -0.02 4.75 16 45 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 46 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 47 H 0.06 2.91 7.16 -2.39 -0.02 2.90 16 48 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -64.69 403.49 3.19 -61.50 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.16 Total: 20.19 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 7.34 Total: 12.10 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -6.29 Total: -120.82 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.05 Total: -17.17 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.69 3.19 -61.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107221400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.326 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds