Wall clock time and date at job start Tue Mar 31 2020 20:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 C 1.53000 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47383 * 304.99713 * 4 3 2 6 6 C 1.52995 * 109.47252 * 65.00238 * 4 3 2 7 7 C 1.52997 * 109.47199 * 58.90857 * 6 4 3 8 8 C 1.50701 * 109.47262 * 185.00246 * 4 3 2 9 9 O 1.21287 * 119.99719 * 335.79871 * 8 4 3 10 10 N 1.34777 * 120.00269 * 155.79462 * 8 4 3 11 11 C 1.46498 * 119.99841 * 175.40326 * 10 8 4 12 12 C 1.50710 * 109.46808 * 180.02562 * 11 10 8 13 13 C 1.35346 * 126.74884 * 94.70938 * 12 11 10 14 14 N 1.35313 * 106.17051 * 179.85003 * 13 12 11 15 15 C 1.46506 * 125.86655 * 180.18510 * 14 13 12 16 16 C 1.53939 * 113.74299 * 14.04316 * 15 14 13 17 17 N 1.47815 * 86.03778 * 222.08339 * 16 15 14 18 18 C 1.36933 * 134.45849 * 204.64929 * 17 16 15 19 19 H 1.07999 * 119.99928 * 179.86224 * 18 17 16 20 20 C 1.38811 * 119.99821 * 359.85473 * 18 17 16 21 21 N 1.31619 * 120.00221 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99719 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47381 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46953 * 120.00509 * 22 20 18 25 25 H 1.48502 * 109.47098 * 240.00379 * 22 20 18 26 26 C 1.47586 * 91.04653 * 24.54678 * 17 16 15 27 27 N 1.28714 * 108.26550 * 0.41898 * 14 13 12 28 28 N 1.28632 * 110.17518 * 359.73345 * 27 14 13 29 29 H 1.09007 * 109.47003 * 59.99945 * 1 2 3 30 30 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47370 * 300.00214 * 1 2 3 32 32 H 1.09001 * 109.46904 * 240.00274 * 2 1 3 33 33 H 1.08993 * 109.46913 * 120.00258 * 2 1 3 34 34 H 1.09001 * 109.46986 * 60.00324 * 3 2 1 35 35 H 1.09002 * 109.47666 * 299.99971 * 3 2 1 36 36 H 1.09003 * 109.47174 * 178.91175 * 6 4 3 37 37 H 1.09005 * 109.47094 * 298.90977 * 6 4 3 38 38 H 1.08995 * 109.47062 * 50.51191 * 7 6 4 39 39 H 1.08999 * 109.46936 * 170.51137 * 7 6 4 40 40 H 1.09004 * 109.47185 * 290.51093 * 7 6 4 41 41 H 0.97001 * 119.99859 * 355.40304 * 10 8 4 42 42 H 1.09005 * 109.47154 * 299.99521 * 11 10 8 43 43 H 1.09001 * 109.47527 * 60.00017 * 11 10 8 44 44 H 1.08000 * 126.91926 * 0.02562 * 13 12 11 45 45 H 1.09007 * 112.94068 * 145.63293 * 15 14 13 46 46 H 1.09004 * 113.76645 * 336.34533 * 16 15 14 47 47 H 1.08997 * 113.77584 * 107.74306 * 16 15 14 48 48 H 0.96995 * 120.00080 * 179.97438 * 21 20 18 49 49 H 1.09009 * 113.76751 * 221.15303 * 26 17 16 50 50 H 1.08994 * 113.87355 * 89.77386 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0806 0.8327 -1.3064 7 6 3.5488 1.6440 -2.4896 8 6 4.0723 2.8579 0.1245 9 8 3.3713 3.7831 -0.2272 10 7 5.3004 3.0957 0.6262 11 6 5.8286 4.4619 0.6535 12 6 7.2092 4.4547 1.2577 13 6 8.3850 4.3929 0.5902 14 7 9.3553 4.4157 1.5330 15 6 10.7979 4.3717 1.2814 16 6 11.1794 4.6366 -0.1863 17 7 12.1493 3.5327 -0.0263 18 6 13.3230 3.1903 -0.6430 19 1 13.8601 2.3074 -0.3295 20 6 13.8222 3.9780 -1.6712 21 7 13.1678 5.0542 -2.0530 22 14 15.4229 3.5104 -2.5130 23 1 15.9580 2.2666 -1.9033 24 1 15.1739 3.2847 -3.9594 25 1 16.4091 4.6081 -2.3458 26 6 11.3465 2.9496 1.0662 27 7 8.7930 4.4775 2.6892 28 7 7.5135 4.5023 2.5595 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 5.1704 0.8504 -1.3142 37 1 3.7333 -0.1974 -1.3868 38 1 3.7512 2.7022 -2.3247 39 1 4.0426 1.3178 -3.4049 40 1 2.4737 1.4897 -2.5820 41 1 5.8346 2.3622 0.9692 42 1 5.8793 4.8522 -0.3630 43 1 5.1726 5.0932 1.2529 44 1 8.5215 4.3394 -0.4798 45 1 11.3722 4.9600 1.9971 46 1 10.3795 4.4194 -0.8942 47 1 11.6425 5.6094 -0.3513 48 1 13.5168 5.6048 -2.7712 49 1 11.9428 2.5779 1.8996 50 1 10.5954 2.2353 0.7290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107225258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:16 Heat of formation + Delta-G solvation = 94.389479 kcal Electronic energy + Delta-G solvation = -28602.624117 eV Core-core repulsion = 24668.389263 eV Total energy + Delta-G solvation = -3934.234853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.09881 -40.21422 -38.40421 -36.75465 -35.16824 -33.46038 -33.14019 -32.00447 -31.26064 -29.19797 -28.00373 -27.01499 -25.36033 -24.93655 -24.39973 -23.09617 -21.96676 -21.31518 -20.99624 -19.69337 -19.53800 -17.54484 -17.09861 -16.69869 -16.44079 -16.09190 -15.77695 -15.42736 -15.14935 -14.82895 -14.25076 -14.19356 -14.09466 -13.95109 -13.51283 -13.36193 -12.98110 -12.89144 -12.75662 -12.30735 -12.20981 -12.14238 -12.07642 -11.87520 -11.52776 -11.41313 -11.28396 -11.21532 -11.20933 -11.01116 -10.96729 -10.86670 -10.68697 -10.55064 -10.23524 -9.94557 -9.86708 -9.58036 -9.15983 -9.12850 -9.06154 -7.29267 -6.08015 -3.43472 1.79035 2.41663 2.55817 2.61457 3.23621 3.29575 3.31954 3.33887 4.19020 4.33473 4.42102 4.46141 4.59967 4.68775 4.70911 4.84127 4.87737 4.90659 4.97097 5.08495 5.12470 5.17406 5.30441 5.36230 5.37867 5.42099 5.49514 5.52572 5.58286 5.60158 5.66912 5.73986 5.78107 5.83525 5.90645 5.99771 6.01938 6.04498 6.07556 6.13249 6.21754 6.26895 6.29974 6.50485 6.76429 6.99810 7.13247 7.40017 7.64498 8.12479 8.70961 8.72504 9.38566 10.15802 11.09286 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002172 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.880807 B =12889.847289 C =13949.802742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.107 4.107 5 H 0.089 0.911 6 C -0.113 4.113 7 C -0.159 4.159 8 C 0.521 3.479 9 O -0.540 6.540 10 N -0.724 5.724 11 C 0.215 3.785 12 C -0.062 4.062 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.164 3.836 17 N -0.598 5.598 18 C -0.232 4.232 19 H 0.088 0.912 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.267 5.267 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.402 0.598 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.190 0.810 45 H 0.132 0.868 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.984 -7.847 2.608 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.129 4.129 5 H 0.108 0.892 6 C -0.151 4.151 7 C -0.216 4.216 8 C 0.307 3.693 9 O -0.417 6.417 10 N -0.376 5.376 11 C 0.090 3.910 12 C -0.201 4.201 13 C -0.169 4.169 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.359 4.359 19 H 0.106 0.894 20 C -0.199 4.199 21 N -0.565 5.565 22 Si 0.749 3.251 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.236 0.764 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.207 0.793 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.911 -7.051 3.647 20.510 hybrid contribution 1.231 -0.593 -1.509 2.035 sum -17.680 -7.644 2.138 19.380 Atomic orbital electron populations 1.21760 0.95800 1.01460 1.01952 1.21589 0.95963 0.96670 1.02109 1.21494 0.92194 0.96829 1.03601 1.21395 0.97917 0.93327 1.00231 0.89232 1.21487 1.00845 0.99812 0.92959 1.21884 1.01261 1.01037 0.97429 1.20614 0.80799 0.91429 0.76461 1.90695 1.55998 1.45905 1.49069 1.46119 1.17792 1.10020 1.63653 1.19273 0.87521 0.83919 1.00331 1.21735 0.95625 1.11805 0.90958 1.23499 0.87480 1.07356 0.98570 1.47915 1.09755 1.43730 1.04326 1.25290 0.72059 1.02056 1.03090 1.22746 0.90916 0.96226 0.86430 1.45677 1.21174 1.26494 1.39162 1.19048 0.95208 1.08574 1.13057 0.89427 1.24858 0.99354 0.97231 0.98446 1.69767 1.39424 1.16114 1.31151 0.85944 0.82184 0.77837 0.79151 1.20202 1.21426 1.21358 1.22928 0.93441 0.91821 0.92530 1.78274 1.01717 1.19622 1.07184 1.75018 1.04822 1.16537 1.17027 0.92690 0.92850 0.92745 0.91654 0.92066 0.91700 0.90379 0.91434 0.90606 0.91845 0.92683 0.92313 0.76369 0.89789 0.89796 0.79259 0.85030 0.94102 0.89017 0.93126 0.91971 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -0.82 5.69 -26.73 -0.15 -0.97 16 3 C -0.10 -0.85 3.88 -26.73 -0.10 -0.96 16 4 C -0.11 -0.89 2.50 -91.77 -0.23 -1.12 16 5 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 6 C -0.11 -0.86 5.43 -26.74 -0.15 -1.00 16 7 C -0.16 -1.38 9.16 37.16 0.34 -1.04 16 8 C 0.52 5.83 5.98 -10.98 -0.07 5.76 16 9 O -0.54 -7.81 15.37 5.55 0.09 -7.72 16 10 N -0.72 -7.71 5.55 -61.46 -0.34 -8.05 16 11 C 0.21 2.55 6.24 -5.19 -0.03 2.52 16 12 C -0.06 -0.87 6.61 -82.78 -0.55 -1.41 16 13 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 14 N -0.26 -4.26 3.54 -56.30 -0.20 -4.45 16 15 C 0.08 1.31 5.13 -70.15 -0.36 0.95 16 16 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 17 N -0.60 -13.61 3.70 -177.89 -0.66 -14.27 16 18 C -0.23 -5.91 10.70 -15.06 -0.16 -6.07 16 19 H 0.09 2.16 7.83 -52.49 -0.41 1.75 16 20 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 21 N -0.92 -24.88 11.39 55.49 0.63 -24.25 16 22 Si 0.92 20.53 29.55 -169.99 -5.02 15.50 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.12 2.18 8.74 -2.97 -0.03 2.15 16 27 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 28 N -0.27 -4.41 12.41 33.29 0.41 -4.00 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.39 6.59 -51.93 -0.34 0.05 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.73 6.26 -51.93 -0.33 0.40 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.47 6.62 -51.93 -0.34 0.13 16 38 H 0.06 0.69 6.38 -51.93 -0.33 0.35 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.48 6.84 -51.93 -0.36 0.12 16 41 H 0.40 3.80 8.47 -40.82 -0.35 3.45 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.19 2.39 6.74 -52.49 -0.35 2.04 16 45 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 46 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 47 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 48 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 49 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -29.95 402.43 -7.78 -37.74 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.14 Total: 3.19 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.41 Total: 0.99 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.64 Total: -55.77 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.09 Total: -7.72 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.95 -7.78 -37.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107225258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.128 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds