Wall clock time and date at job start Tue Mar 31 2020 20:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 C 1.53000 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47383 * 304.99713 * 4 3 2 6 6 C 1.52995 * 109.47252 * 65.00238 * 4 3 2 7 7 C 1.52997 * 109.47199 * 58.90857 * 6 4 3 8 8 C 1.50701 * 109.47262 * 185.00246 * 4 3 2 9 9 O 1.21287 * 119.99719 * 335.79871 * 8 4 3 10 10 N 1.34777 * 120.00269 * 155.79462 * 8 4 3 11 11 C 1.46498 * 119.99841 * 175.40326 * 10 8 4 12 12 C 1.50710 * 109.46808 * 180.02562 * 11 10 8 13 13 C 1.35346 * 126.74884 * 94.70938 * 12 11 10 14 14 N 1.35313 * 106.17051 * 179.85003 * 13 12 11 15 15 C 1.46506 * 125.86655 * 180.18510 * 14 13 12 16 16 C 1.53939 * 113.74299 * 14.04316 * 15 14 13 17 17 N 1.47815 * 86.03778 * 222.08339 * 16 15 14 18 18 C 1.36933 * 134.45849 * 204.64929 * 17 16 15 19 19 H 1.07999 * 119.99928 * 179.86224 * 18 17 16 20 20 C 1.38811 * 119.99821 * 359.85473 * 18 17 16 21 21 N 1.31619 * 120.00221 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99719 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47381 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46953 * 120.00509 * 22 20 18 25 25 H 1.48502 * 109.47098 * 240.00379 * 22 20 18 26 26 C 1.47586 * 91.04653 * 24.54678 * 17 16 15 27 27 N 1.28714 * 108.26550 * 0.41898 * 14 13 12 28 28 N 1.28632 * 110.17518 * 359.73345 * 27 14 13 29 29 H 1.09007 * 109.47003 * 59.99945 * 1 2 3 30 30 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47370 * 300.00214 * 1 2 3 32 32 H 1.09001 * 109.46904 * 240.00274 * 2 1 3 33 33 H 1.08993 * 109.46913 * 120.00258 * 2 1 3 34 34 H 1.09001 * 109.46986 * 60.00324 * 3 2 1 35 35 H 1.09002 * 109.47666 * 299.99971 * 3 2 1 36 36 H 1.09003 * 109.47174 * 178.91175 * 6 4 3 37 37 H 1.09005 * 109.47094 * 298.90977 * 6 4 3 38 38 H 1.08995 * 109.47062 * 50.51191 * 7 6 4 39 39 H 1.08999 * 109.46936 * 170.51137 * 7 6 4 40 40 H 1.09004 * 109.47185 * 290.51093 * 7 6 4 41 41 H 0.97001 * 119.99859 * 355.40304 * 10 8 4 42 42 H 1.09005 * 109.47154 * 299.99521 * 11 10 8 43 43 H 1.09001 * 109.47527 * 60.00017 * 11 10 8 44 44 H 1.08000 * 126.91926 * 0.02562 * 13 12 11 45 45 H 1.09007 * 112.94068 * 145.63293 * 15 14 13 46 46 H 1.09004 * 113.76645 * 336.34533 * 16 15 14 47 47 H 1.08997 * 113.77584 * 107.74306 * 16 15 14 48 48 H 0.96995 * 120.00080 * 179.97438 * 21 20 18 49 49 H 1.09009 * 113.76751 * 221.15303 * 26 17 16 50 50 H 1.08994 * 113.87355 * 89.77386 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0806 0.8327 -1.3064 7 6 3.5488 1.6440 -2.4896 8 6 4.0723 2.8579 0.1245 9 8 3.3713 3.7831 -0.2272 10 7 5.3004 3.0957 0.6262 11 6 5.8286 4.4619 0.6535 12 6 7.2092 4.4547 1.2577 13 6 8.3850 4.3929 0.5902 14 7 9.3553 4.4157 1.5330 15 6 10.7979 4.3717 1.2814 16 6 11.1794 4.6366 -0.1863 17 7 12.1493 3.5327 -0.0263 18 6 13.3230 3.1903 -0.6430 19 1 13.8601 2.3074 -0.3295 20 6 13.8222 3.9780 -1.6712 21 7 13.1678 5.0542 -2.0530 22 14 15.4229 3.5104 -2.5130 23 1 15.9580 2.2666 -1.9033 24 1 15.1739 3.2847 -3.9594 25 1 16.4091 4.6081 -2.3458 26 6 11.3465 2.9496 1.0662 27 7 8.7930 4.4775 2.6892 28 7 7.5135 4.5023 2.5595 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 5.1704 0.8504 -1.3142 37 1 3.7333 -0.1974 -1.3868 38 1 3.7512 2.7022 -2.3247 39 1 4.0426 1.3178 -3.4049 40 1 2.4737 1.4897 -2.5820 41 1 5.8346 2.3622 0.9692 42 1 5.8793 4.8522 -0.3630 43 1 5.1726 5.0932 1.2529 44 1 8.5215 4.3394 -0.4798 45 1 11.3722 4.9600 1.9971 46 1 10.3795 4.4194 -0.8942 47 1 11.6425 5.6094 -0.3513 48 1 13.5168 5.6048 -2.7712 49 1 11.9428 2.5779 1.8996 50 1 10.5954 2.2353 0.7290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107225258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:13 Heat of formation + Delta-G solvation = 76.071915 kcal Electronic energy + Delta-G solvation = -28603.418426 eV Core-core repulsion = 24668.389263 eV Total energy + Delta-G solvation = -3935.029163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.85 seconds Orbital eigenvalues (eV) -44.36091 -41.08613 -39.94606 -37.47364 -36.20167 -34.95963 -33.81453 -33.58907 -32.40645 -29.91124 -29.69629 -28.01476 -26.85053 -26.04960 -25.61998 -23.77739 -23.41968 -22.38930 -21.86005 -21.13802 -20.35052 -19.02614 -18.42229 -17.76670 -17.52859 -17.00370 -16.92158 -16.74484 -16.25729 -16.03032 -15.75803 -15.09797 -14.90323 -14.79699 -14.73196 -14.40656 -14.14166 -13.94211 -13.64713 -13.51780 -13.47392 -13.39515 -12.96947 -12.90117 -12.80479 -12.71694 -12.63613 -12.43780 -12.13417 -12.06728 -11.86865 -11.82081 -11.78832 -11.72711 -11.49053 -11.29667 -11.05951 -10.91730 -10.76693 -10.23745 -10.09770 -9.10940 -8.01230 -5.36403 0.56209 1.24036 1.28989 1.47864 1.49737 1.58317 1.67934 2.40717 2.43381 3.07350 3.11870 3.31224 3.33532 3.70183 3.74337 3.81805 3.90788 3.95781 3.99896 4.15319 4.27571 4.31030 4.38629 4.45050 4.48681 4.57199 4.59868 4.69038 4.70546 4.76968 4.84041 4.91500 4.95410 5.00275 5.01509 5.04938 5.09958 5.12390 5.20517 5.22686 5.28273 5.36796 5.39091 5.42225 5.46811 5.59820 5.65728 5.77202 6.54565 6.80431 7.25415 7.45295 7.48759 8.33549 9.15748 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002172 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.880807 B =12889.847289 C =13949.802742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.102 4.102 5 H 0.111 0.889 6 C -0.110 4.110 7 C -0.158 4.158 8 C 0.519 3.481 9 O -0.576 6.576 10 N -0.718 5.718 11 C 0.219 3.781 12 C -0.048 4.048 13 C -0.013 4.013 14 N -0.268 5.268 15 C 0.104 3.896 16 C 0.165 3.835 17 N -0.627 5.627 18 C -0.236 4.236 19 H 0.092 0.908 20 C -0.057 4.057 21 N -0.949 5.949 22 Si 0.979 3.021 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.126 3.874 27 N -0.108 5.108 28 N -0.282 5.282 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.037 0.963 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.410 0.590 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.207 0.793 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.076 0.924 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.357 -9.857 2.897 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.138 4.138 4 C -0.123 4.123 5 H 0.129 0.871 6 C -0.147 4.147 7 C -0.215 4.215 8 C 0.307 3.693 9 O -0.456 6.456 10 N -0.370 5.370 11 C 0.093 3.907 12 C -0.188 4.188 13 C -0.167 4.167 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.039 3.961 17 N -0.355 5.355 18 C -0.364 4.364 19 H 0.109 0.891 20 C -0.251 4.251 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.000 4.000 27 N -0.087 5.087 28 N -0.148 5.148 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.246 0.754 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.224 0.776 45 H 0.155 0.845 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.295 -9.098 3.982 21.701 hybrid contribution 1.230 0.040 -1.559 1.986 sum -18.065 -9.058 2.423 20.353 Atomic orbital electron populations 1.21776 0.95765 1.01997 1.01613 1.21564 0.95996 0.95303 1.02959 1.21449 0.92215 0.97895 1.02257 1.21441 0.97815 0.91499 1.01565 0.87092 1.21507 1.00966 1.00522 0.91732 1.21864 1.01660 0.99639 0.98364 1.21170 0.80361 0.92342 0.75441 1.90681 1.56955 1.47305 1.50625 1.46054 1.17827 1.09692 1.63400 1.19226 0.86269 0.84698 1.00465 1.21919 0.96305 1.10486 0.90053 1.23817 0.87116 1.06597 0.99124 1.47720 1.09417 1.44283 1.04643 1.24704 0.72762 1.01282 1.01064 1.22616 0.90492 0.94397 0.88620 1.45909 1.21379 1.27927 1.40238 1.19376 0.96161 1.08225 1.12639 0.89068 1.25597 1.02287 0.97573 0.99599 1.69918 1.40829 1.17167 1.31720 0.85007 0.78839 0.77693 0.77738 1.18848 1.21962 1.21936 1.23017 0.93133 0.92422 0.91447 1.78280 1.02067 1.20801 1.07516 1.75006 1.04620 1.16920 1.18283 0.93059 0.91847 0.93149 0.90742 0.91156 0.93000 0.91870 0.91165 0.88503 0.94376 0.92086 0.92045 0.75412 0.88901 0.90575 0.77623 0.84458 0.93493 0.91845 0.93808 0.90585 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.98 16 2 C -0.12 -1.31 5.69 30.59 0.17 -1.14 16 3 C -0.10 -1.55 3.88 30.59 0.12 -1.43 16 4 C -0.10 -1.51 2.50 -11.54 -0.03 -1.54 16 5 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 6 C -0.11 -1.42 5.43 30.59 0.17 -1.25 16 7 C -0.16 -2.58 9.16 71.98 0.66 -1.92 16 8 C 0.52 11.13 5.98 87.66 0.52 11.65 16 9 O -0.58 -16.70 15.37 -3.05 -0.05 -16.74 16 10 N -0.72 -14.25 5.55 -466.76 -2.59 -16.84 16 11 C 0.22 4.96 6.24 85.64 0.53 5.50 16 12 C -0.05 -1.27 6.61 41.60 0.28 -1.00 16 13 C -0.01 -0.36 10.72 83.49 0.89 0.54 16 14 N -0.27 -8.20 3.54 -332.04 -1.18 -9.37 16 15 C 0.10 3.40 5.13 46.74 0.24 3.64 16 16 C 0.17 6.62 6.90 86.44 0.60 7.21 16 17 N -0.63 -28.03 3.70 -716.71 -2.65 -30.69 16 18 C -0.24 -11.88 10.70 84.03 0.90 -10.98 16 19 H 0.09 4.39 7.83 -2.91 -0.02 4.36 16 20 C -0.06 -2.93 5.50 84.86 0.47 -2.47 16 21 N -0.95 -52.00 11.39 21.65 0.25 -51.76 16 22 Si 0.98 42.13 29.55 68.60 2.03 44.16 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 24 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 26 C 0.13 4.33 8.74 86.48 0.76 5.09 16 27 N -0.11 -3.57 13.17 37.02 0.49 -3.09 16 28 N -0.28 -8.92 12.41 -48.60 -0.60 -9.52 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.69 6.59 -2.39 -0.02 0.67 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.17 6.26 -2.39 -0.01 1.15 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 0.89 6.62 -2.38 -0.02 0.87 16 38 H 0.04 0.81 6.38 -2.39 -0.02 0.80 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 0.95 6.84 -2.39 -0.02 0.93 16 41 H 0.41 6.88 8.47 -92.71 -0.78 6.10 16 42 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.21 4.78 6.74 -2.91 -0.02 4.76 16 45 H 0.14 4.37 8.14 -2.38 -0.02 4.35 16 46 H 0.05 1.82 6.31 -2.38 -0.02 1.80 16 47 H 0.06 2.92 7.16 -2.39 -0.02 2.90 16 48 H 0.25 13.56 8.31 -92.71 -0.77 12.78 16 49 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 50 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -64.09 402.43 2.84 -61.24 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.16 Total: 21.68 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.99 Total: 10.93 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -6.29 Total: -121.27 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.05 Total: -16.74 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -64.09 2.84 -61.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107225258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.316 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.86 seconds