Wall clock time and date at job start Tue Mar 31 2020 20:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 C 1.53007 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.52990 * 109.47023 * 300.00181 * 3 2 1 6 6 C 1.52995 * 109.47353 * 299.99476 * 5 3 2 7 7 C 1.50703 * 109.46771 * 60.00244 * 3 2 1 8 8 O 1.21283 * 119.99488 * 239.99768 * 7 3 2 9 9 N 1.34777 * 120.00290 * 60.00208 * 7 3 2 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 3 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.36935 * 134.45249 * 204.64331 * 16 15 14 18 18 H 1.08003 * 120.00142 * 179.86840 * 17 16 15 19 19 C 1.38809 * 120.00476 * 359.86834 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46957 * 90.00147 * 21 19 17 23 23 H 1.48500 * 109.47111 * 209.99709 * 21 19 17 24 24 H 1.48494 * 109.46926 * 329.99957 * 21 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 1.09001 * 109.47225 * 60.00182 * 1 2 3 29 29 H 1.09005 * 109.47444 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47413 * 299.99855 * 1 2 3 31 31 H 1.08998 * 109.47413 * 240.00145 * 2 1 3 32 32 H 1.09008 * 109.47425 * 120.00179 * 2 1 3 33 33 H 1.09001 * 109.46852 * 300.00098 * 4 3 2 34 34 H 1.08993 * 109.46731 * 60.00335 * 4 3 2 35 35 H 1.09003 * 109.46582 * 180.02562 * 4 3 2 36 36 H 1.08998 * 109.47508 * 59.99879 * 5 3 2 37 37 H 1.09011 * 109.47182 * 179.97438 * 5 3 2 38 38 H 1.09001 * 109.47549 * 179.97438 * 6 5 3 39 39 H 1.08999 * 109.47616 * 300.00389 * 6 5 3 40 40 H 1.09003 * 109.47280 * 60.00024 * 6 5 3 41 41 H 0.97001 * 119.99727 * 359.97438 * 9 7 3 42 42 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 43 43 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 44 44 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 45 45 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 46 46 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 47 47 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 48 48 H 0.96996 * 120.00067 * 180.02562 * 20 19 17 49 49 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 50 50 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 1.5300 2.1637 -1.2491 6 6 2.0400 1.4426 -2.4984 7 6 1.5376 2.1528 1.2305 8 8 0.8404 3.1389 1.1192 9 7 1.8633 1.6924 2.4546 10 6 1.3699 2.3794 3.6508 11 6 1.8678 1.6658 4.8812 12 6 2.9753 1.9659 5.5991 13 7 3.0236 1.0683 6.6105 14 6 4.0513 1.0038 7.6525 15 6 4.9342 2.2625 7.7311 16 7 6.0685 1.3310 7.9051 17 6 7.3100 1.4275 8.4748 18 1 7.9724 0.5745 8.4739 19 6 7.7173 2.6217 9.0534 20 7 6.9098 3.6612 9.0550 21 14 9.4111 2.7536 9.8299 22 1 10.3905 3.2026 8.8079 23 1 9.3706 3.7367 10.9421 24 1 9.8188 1.4265 10.3568 25 6 5.3253 0.2551 7.2210 26 7 2.0141 0.2779 6.4969 27 7 1.3052 0.6076 5.4754 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9329 0.9287 0.8909 34 1 3.9336 0.9286 -0.8891 35 1 3.9333 2.4702 0.0011 36 1 0.4400 2.1637 -1.2492 37 1 1.8929 3.1916 -1.2489 38 1 1.6762 1.9561 -3.3884 39 1 3.1300 1.4426 -2.4985 40 1 1.6767 0.4149 -2.4985 41 1 2.4207 0.9035 2.5436 42 1 1.7328 3.4073 3.6550 43 1 0.2800 2.3789 3.6466 44 1 3.6778 2.7630 5.4050 45 1 3.6587 0.6822 8.6172 46 1 4.9716 2.8316 6.8022 47 1 4.7365 2.8839 8.6045 48 1 7.1945 4.4958 9.4590 49 1 5.4394 -0.7232 7.6879 50 1 5.4768 0.2316 6.1419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107238291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:26 Heat of formation + Delta-G solvation = 101.417289 kcal Electronic energy + Delta-G solvation = -29164.798373 eV Core-core repulsion = 25230.868269 eV Total energy + Delta-G solvation = -3933.930105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.09315 -40.54199 -38.40411 -37.00523 -35.24776 -33.43732 -32.04914 -31.63882 -31.22868 -29.89820 -27.99586 -26.83349 -25.37881 -25.15162 -24.40479 -23.60302 -21.99522 -21.75417 -21.05461 -19.65951 -19.06894 -17.51541 -17.07622 -16.63593 -16.43445 -15.82806 -15.78034 -15.20921 -15.15052 -14.75405 -14.62798 -14.13884 -13.96669 -13.77191 -13.42693 -13.15950 -13.02702 -12.86560 -12.69254 -12.34937 -12.23512 -12.15325 -12.12059 -11.88396 -11.80464 -11.53061 -11.40824 -11.24953 -11.20824 -10.98962 -10.97212 -10.72586 -10.65024 -10.55192 -10.26170 -9.93481 -9.84930 -9.57556 -9.14825 -9.12041 -9.05507 -7.29073 -6.07530 -3.43101 1.79399 2.42133 2.58207 2.61774 3.24274 3.29615 3.31566 3.34105 4.19467 4.32372 4.35055 4.40680 4.55184 4.69095 4.71107 4.82915 4.92539 4.95774 5.10460 5.12735 5.14519 5.17685 5.27183 5.33506 5.37479 5.39889 5.49563 5.54033 5.56829 5.62939 5.69110 5.73015 5.74004 5.85123 5.90732 5.96267 6.01662 6.02269 6.07792 6.13820 6.22708 6.27237 6.30840 6.50873 6.76689 7.00196 7.13363 7.41023 7.64743 8.13555 8.71279 8.72797 9.38920 10.16158 11.09695 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016179 B = 0.002314 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.229333 B =12098.925312 C =12912.222112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.079 4.079 4 C -0.145 4.145 5 C -0.101 4.101 6 C -0.156 4.156 7 C 0.527 3.473 8 O -0.542 6.542 9 N -0.722 5.722 10 C 0.215 3.785 11 C -0.062 4.062 12 C -0.015 4.015 13 N -0.265 5.265 14 C 0.077 3.923 15 C 0.164 3.836 16 N -0.598 5.598 17 C -0.233 4.233 18 H 0.087 0.913 19 C -0.001 4.001 20 N -0.919 5.919 21 Si 0.920 3.080 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.267 5.267 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.402 0.598 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.190 0.810 45 H 0.132 0.868 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.945 -4.999 -17.800 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.082 4.082 4 C -0.202 4.202 5 C -0.139 4.139 6 C -0.213 4.213 7 C 0.313 3.687 8 O -0.418 6.418 9 N -0.374 5.374 10 C 0.090 3.910 11 C -0.201 4.201 12 C -0.169 4.169 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.359 4.359 18 H 0.105 0.895 19 C -0.199 4.199 20 N -0.565 5.565 21 Si 0.749 3.251 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.007 4.007 26 N -0.068 5.068 27 N -0.134 5.134 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.236 0.764 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.207 0.793 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.900 -5.341 -17.014 20.396 hybrid contribution 1.923 0.716 0.240 2.066 sum -7.977 -4.625 -16.775 19.142 Atomic orbital electron populations 1.21864 0.95271 1.01868 1.02464 1.21640 0.96655 0.93870 1.02932 1.20884 0.97123 0.96476 0.93689 1.21932 0.92508 1.02906 1.02868 1.21383 1.01545 0.99113 0.91833 1.21919 1.01384 1.00688 0.97329 1.20495 0.79716 0.84213 0.84285 1.90693 1.37937 1.26421 1.86796 1.46069 1.53737 1.32347 1.05224 1.19272 0.99450 0.94169 0.78155 1.21732 0.96797 0.99877 1.01705 1.23503 1.01787 0.99687 0.91923 1.47908 1.18564 1.19122 1.20130 1.25283 0.83446 1.04612 0.89143 1.22744 0.82163 0.90199 1.01194 1.45671 1.14481 1.08107 1.64253 1.18998 0.89099 0.97666 1.30180 0.89492 1.24858 0.98940 0.95467 1.00596 1.69761 1.35856 1.02287 1.48575 0.86012 0.82755 0.77678 0.78668 1.21266 1.21340 1.20324 1.22926 0.86638 0.94406 0.96751 1.78274 0.96550 1.16405 1.15567 1.75020 1.22775 1.12268 1.03306 0.92092 0.92437 0.92548 0.90481 0.91531 0.92096 0.91023 0.91859 0.90921 0.91319 0.92634 0.92365 0.92372 0.76390 0.89716 0.89875 0.79264 0.85036 0.94109 0.89024 0.93073 0.91974 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.31 37.15 0.35 -0.96 16 2 C -0.11 -0.85 4.54 -26.73 -0.12 -0.97 16 3 C -0.08 -0.68 0.43 -155.66 -0.07 -0.75 16 4 C -0.14 -1.09 8.02 37.16 0.30 -0.79 16 5 C -0.10 -0.87 3.93 -26.74 -0.10 -0.98 16 6 C -0.16 -1.01 9.21 37.16 0.34 -0.66 16 7 C 0.53 6.08 5.22 -10.98 -0.06 6.03 16 8 O -0.54 -8.11 15.98 5.55 0.09 -8.02 16 9 N -0.72 -7.85 5.33 -61.47 -0.33 -8.18 16 10 C 0.21 2.58 6.23 -5.19 -0.03 2.55 16 11 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 12 C -0.02 -0.22 10.72 -17.04 -0.18 -0.40 16 13 N -0.26 -4.26 3.54 -56.31 -0.20 -4.46 16 14 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 15 C 0.16 3.32 6.90 -2.84 -0.02 3.30 16 16 N -0.60 -13.65 3.70 -177.90 -0.66 -14.31 16 17 C -0.23 -5.93 10.70 -15.06 -0.16 -6.09 16 18 H 0.09 2.14 7.83 -52.48 -0.41 1.73 16 19 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 20 N -0.92 -24.94 11.39 55.49 0.63 -24.31 16 21 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.12 2.19 8.74 -2.97 -0.03 2.16 16 26 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 27 N -0.27 -4.39 12.41 33.29 0.41 -3.97 16 28 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.58 7.22 -51.93 -0.37 0.20 16 31 H 0.08 0.48 6.43 -51.93 -0.33 0.14 16 32 H 0.07 0.50 7.56 -51.92 -0.39 0.11 16 33 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 34 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.69 6.39 -51.93 -0.33 0.36 16 37 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 40 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 41 H 0.40 3.96 7.30 -40.82 -0.30 3.66 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.19 2.41 6.74 -52.49 -0.35 2.06 16 45 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 46 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 47 H 0.09 2.08 7.16 -51.93 -0.37 1.70 16 48 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -30.01 395.35 -6.97 -36.99 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.86 Total: 3.68 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.79 Total: 1.84 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.65 Total: -55.97 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.01 -6.97 -36.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107238291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.404 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds