Wall clock time and date at job start Tue Mar 31 2020 20:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 C 1.53007 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.52990 * 109.47023 * 300.00181 * 3 2 1 6 6 C 1.52995 * 109.47353 * 299.99476 * 5 3 2 7 7 C 1.50703 * 109.46771 * 60.00244 * 3 2 1 8 8 O 1.21283 * 119.99488 * 239.99768 * 7 3 2 9 9 N 1.34777 * 120.00290 * 60.00208 * 7 3 2 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 3 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.36935 * 134.45249 * 204.64331 * 16 15 14 18 18 H 1.08003 * 120.00142 * 179.86840 * 17 16 15 19 19 C 1.38809 * 120.00476 * 359.86834 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46957 * 90.00147 * 21 19 17 23 23 H 1.48500 * 109.47111 * 209.99709 * 21 19 17 24 24 H 1.48494 * 109.46926 * 329.99957 * 21 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 1.09001 * 109.47225 * 60.00182 * 1 2 3 29 29 H 1.09005 * 109.47444 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47413 * 299.99855 * 1 2 3 31 31 H 1.08998 * 109.47413 * 240.00145 * 2 1 3 32 32 H 1.09008 * 109.47425 * 120.00179 * 2 1 3 33 33 H 1.09001 * 109.46852 * 300.00098 * 4 3 2 34 34 H 1.08993 * 109.46731 * 60.00335 * 4 3 2 35 35 H 1.09003 * 109.46582 * 180.02562 * 4 3 2 36 36 H 1.08998 * 109.47508 * 59.99879 * 5 3 2 37 37 H 1.09011 * 109.47182 * 179.97438 * 5 3 2 38 38 H 1.09001 * 109.47549 * 179.97438 * 6 5 3 39 39 H 1.08999 * 109.47616 * 300.00389 * 6 5 3 40 40 H 1.09003 * 109.47280 * 60.00024 * 6 5 3 41 41 H 0.97001 * 119.99727 * 359.97438 * 9 7 3 42 42 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 43 43 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 44 44 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 45 45 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 46 46 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 47 47 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 48 48 H 0.96996 * 120.00067 * 180.02562 * 20 19 17 49 49 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 50 50 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 1.5300 2.1637 -1.2491 6 6 2.0400 1.4426 -2.4984 7 6 1.5376 2.1528 1.2305 8 8 0.8404 3.1389 1.1192 9 7 1.8633 1.6924 2.4546 10 6 1.3699 2.3794 3.6508 11 6 1.8678 1.6658 4.8812 12 6 2.9753 1.9659 5.5991 13 7 3.0236 1.0683 6.6105 14 6 4.0513 1.0038 7.6525 15 6 4.9342 2.2625 7.7311 16 7 6.0685 1.3310 7.9051 17 6 7.3100 1.4275 8.4748 18 1 7.9724 0.5745 8.4739 19 6 7.7173 2.6217 9.0534 20 7 6.9098 3.6612 9.0550 21 14 9.4111 2.7536 9.8299 22 1 10.3905 3.2026 8.8079 23 1 9.3706 3.7367 10.9421 24 1 9.8188 1.4265 10.3568 25 6 5.3253 0.2551 7.2210 26 7 2.0141 0.2779 6.4969 27 7 1.3052 0.6076 5.4754 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9329 0.9287 0.8909 34 1 3.9336 0.9286 -0.8891 35 1 3.9333 2.4702 0.0011 36 1 0.4400 2.1637 -1.2492 37 1 1.8929 3.1916 -1.2489 38 1 1.6762 1.9561 -3.3884 39 1 3.1300 1.4426 -2.4985 40 1 1.6767 0.4149 -2.4985 41 1 2.4207 0.9035 2.5436 42 1 1.7328 3.4073 3.6550 43 1 0.2800 2.3789 3.6466 44 1 3.6778 2.7630 5.4050 45 1 3.6587 0.6822 8.6172 46 1 4.9716 2.8316 6.8022 47 1 4.7365 2.8839 8.6045 48 1 7.1945 4.4958 9.4590 49 1 5.4394 -0.7232 7.6879 50 1 5.4768 0.2316 6.1419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107238291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:25 Heat of formation + Delta-G solvation = 82.692553 kcal Electronic energy + Delta-G solvation = -29165.610339 eV Core-core repulsion = 25230.868269 eV Total energy + Delta-G solvation = -3934.742070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.36151 -41.40806 -39.95133 -37.79642 -36.31435 -34.96601 -33.66807 -32.59967 -32.06121 -30.59571 -29.70838 -27.89273 -26.83962 -26.06476 -25.83797 -24.23389 -23.43377 -22.74193 -22.17502 -21.13984 -19.93579 -19.00728 -18.36907 -17.71813 -17.52520 -16.97348 -16.92884 -16.63821 -16.11270 -15.85875 -15.67748 -15.53990 -14.90982 -14.73279 -14.57332 -14.42779 -13.99680 -13.76393 -13.65640 -13.54610 -13.42039 -13.39591 -12.97816 -12.93949 -12.77724 -12.73852 -12.63491 -12.47698 -12.43608 -12.17661 -12.11081 -11.87738 -11.80054 -11.72448 -11.37696 -11.28362 -11.05603 -10.91178 -10.77937 -10.24396 -10.11959 -9.11223 -8.01165 -5.36509 0.55784 1.23402 1.28568 1.48532 1.49907 1.57488 1.66978 2.38959 2.43063 3.07041 3.11243 3.30991 3.33021 3.64083 3.68914 3.73911 3.87914 3.91678 3.99222 4.15011 4.16440 4.33901 4.47161 4.49972 4.54795 4.55633 4.58521 4.68002 4.69650 4.73631 4.81553 4.90922 4.94948 4.99901 5.00653 5.04328 5.08901 5.09542 5.14884 5.23833 5.27938 5.32365 5.36412 5.37495 5.41774 5.62599 5.65515 5.77059 6.51622 6.80149 7.22569 7.45038 7.48725 8.33452 9.15622 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016179 B = 0.002314 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.229333 B =12098.925312 C =12912.222112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 C -0.074 4.074 4 C -0.143 4.143 5 C -0.100 4.100 6 C -0.151 4.151 7 C 0.525 3.475 8 O -0.580 6.580 9 N -0.715 5.715 10 C 0.218 3.782 11 C -0.048 4.048 12 C -0.013 4.013 13 N -0.268 5.268 14 C 0.105 3.895 15 C 0.165 3.835 16 N -0.628 5.628 17 C -0.237 4.237 18 H 0.091 0.909 19 C -0.056 4.056 20 N -0.949 5.949 21 Si 0.979 3.021 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.126 3.874 26 N -0.107 5.107 27 N -0.280 5.280 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.409 0.591 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.206 0.794 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.076 0.924 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.236 -6.522 -19.197 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C -0.077 4.077 4 C -0.201 4.201 5 C -0.138 4.138 6 C -0.208 4.208 7 C 0.312 3.688 8 O -0.460 6.460 9 N -0.367 5.367 10 C 0.093 3.907 11 C -0.188 4.188 12 C -0.167 4.167 13 N -0.060 5.060 14 C 0.002 3.998 15 C 0.039 3.961 16 N -0.355 5.355 17 C -0.365 4.365 18 H 0.109 0.891 19 C -0.250 4.250 20 N -0.597 5.597 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.192 1.192 25 C 0.000 4.000 26 N -0.086 5.086 27 N -0.147 5.147 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.245 0.755 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.223 0.777 45 H 0.156 0.844 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.200 -6.921 -18.426 21.728 hybrid contribution 1.599 1.176 0.601 2.074 sum -7.601 -5.745 -17.826 20.212 Atomic orbital electron populations 1.21855 0.96049 1.02177 1.01316 1.21664 0.95893 0.93021 1.04168 1.20907 0.97995 0.96796 0.91964 1.21950 0.91241 1.02755 1.04108 1.21358 1.00716 0.98654 0.93059 1.21892 1.01903 1.00921 0.96077 1.21083 0.78879 0.83723 0.85069 1.90674 1.39737 1.28260 1.87312 1.45996 1.53496 1.32377 1.04800 1.19231 0.99082 0.94462 0.77919 1.21894 0.96191 0.98939 1.01738 1.23813 1.02105 0.99553 0.91206 1.47712 1.18378 1.19667 1.20288 1.24698 0.83375 1.02111 0.89597 1.22612 0.82486 0.90851 1.00160 1.45909 1.14381 1.10242 1.64956 1.19336 0.90208 0.97634 1.29319 0.89082 1.25605 1.02100 0.95499 1.01844 1.69916 1.37258 1.02474 1.50006 0.85071 0.79084 0.77674 0.77445 1.21280 1.22155 1.19171 1.23016 0.85938 0.94034 0.97033 1.78282 0.96989 1.17095 1.16202 1.75009 1.23017 1.13181 1.03469 0.91972 0.91362 0.94998 0.88292 0.91192 0.91619 0.89049 0.92726 0.92296 0.92950 0.92281 0.91444 0.91315 0.75549 0.88896 0.90555 0.77677 0.84431 0.93552 0.91848 0.93803 0.90559 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.31 71.98 0.67 -1.76 16 2 C -0.11 -1.42 4.54 30.59 0.14 -1.28 16 3 C -0.07 -1.17 0.43 -52.93 -0.02 -1.19 16 4 C -0.14 -1.84 8.02 71.98 0.58 -1.26 16 5 C -0.10 -1.64 3.93 30.59 0.12 -1.52 16 6 C -0.15 -1.62 9.21 71.98 0.66 -0.95 16 7 C 0.52 11.85 5.22 87.66 0.46 12.31 16 8 O -0.58 -17.59 15.98 -3.04 -0.05 -17.64 16 9 N -0.71 -14.82 5.33 -466.79 -2.49 -17.31 16 10 C 0.22 5.07 6.23 85.63 0.53 5.60 16 11 C -0.05 -1.29 6.61 41.60 0.28 -1.01 16 12 C -0.01 -0.37 10.72 83.49 0.89 0.53 16 13 N -0.27 -8.21 3.54 -332.06 -1.18 -9.39 16 14 C 0.10 3.42 5.14 46.75 0.24 3.66 16 15 C 0.17 6.65 6.90 86.44 0.60 7.25 16 16 N -0.63 -28.16 3.70 -716.75 -2.65 -30.81 16 17 C -0.24 -11.96 10.70 84.03 0.90 -11.06 16 18 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 19 C -0.06 -2.93 5.50 84.86 0.47 -2.47 16 20 N -0.95 -52.17 11.39 21.65 0.25 -51.92 16 21 Si 0.98 42.18 29.55 68.60 2.03 44.20 16 22 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 C 0.13 4.35 8.74 86.49 0.76 5.10 16 26 N -0.11 -3.53 13.17 37.02 0.49 -3.05 16 27 N -0.28 -8.86 12.41 -48.60 -0.60 -9.46 16 28 H 0.06 0.94 6.43 -2.39 -0.02 0.92 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.03 0.64 7.22 -2.39 -0.02 0.62 16 31 H 0.10 0.89 6.43 -2.39 -0.02 0.87 16 32 H 0.07 0.88 7.56 -2.38 -0.02 0.86 16 33 H 0.06 0.79 7.56 -2.39 -0.02 0.77 16 34 H 0.09 0.83 6.43 -2.39 -0.02 0.81 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 1.12 6.39 -2.39 -0.02 1.10 16 37 H 0.05 1.02 8.10 -2.38 -0.02 1.00 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.61 6.43 -2.39 -0.02 0.59 16 40 H 0.07 0.60 6.43 -2.39 -0.02 0.59 16 41 H 0.41 7.37 7.30 -92.71 -0.68 6.69 16 42 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.21 4.85 6.74 -2.91 -0.02 4.83 16 45 H 0.14 4.38 8.14 -2.39 -0.02 4.37 16 46 H 0.05 1.81 6.31 -2.39 -0.02 1.79 16 47 H 0.06 2.92 7.16 -2.39 -0.02 2.91 16 48 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 49 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.39 395.35 3.34 -61.05 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.28 Total: 22.37 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 7.27 Total: 11.95 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -6.19 Total: -121.95 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.05 Total: -17.64 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -64.39 3.34 -61.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107238291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.747 kcal (2) G-P(sol) polarization free energy of solvation -64.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds