Wall clock time and date at job start Tue Mar 31 2020 20:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46559 * 2 1 4 4 C 1.53011 * 109.46747 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46913 * 179.97438 * 4 3 2 6 6 O 1.21288 * 120.00185 * 0.02562 * 5 4 3 7 7 N 1.34769 * 120.00175 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00499 * 179.97438 * 7 5 4 9 9 H 1.09005 * 107.87401 * 31.55960 * 8 7 5 10 10 C 1.50946 * 108.03152 * 275.00283 * 8 7 5 11 11 C 1.53683 * 110.95470 * 165.75097 * 10 8 7 12 12 C 1.51884 * 106.90053 * 79.08553 * 11 10 8 13 13 N 1.29896 * 127.80051 * 114.81251 * 12 11 10 14 14 N 1.29025 * 109.22384 * 180.25796 * 13 12 11 15 15 C 1.30974 * 109.70960 * 359.94927 * 14 13 12 16 16 C 1.50698 * 126.61655 * 179.90302 * 15 14 13 17 17 N 1.46490 * 109.47266 * 90.02065 * 16 15 14 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 N 1.34593 * 124.57851 * 295.20934 * 12 11 10 27 27 C 1.47505 * 125.02617 * 358.85839 * 26 12 11 28 28 C 1.50862 * 107.99835 * 148.08428 * 8 7 5 29 29 H 1.08996 * 109.47689 * 299.99998 * 1 2 3 30 30 H 1.08999 * 109.47596 * 60.00590 * 1 2 3 31 31 H 1.09010 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47228 * 240.00149 * 2 1 3 33 33 H 1.08997 * 109.46904 * 119.99664 * 2 1 3 34 34 H 1.09000 * 109.47229 * 60.00150 * 3 2 1 35 35 H 1.09000 * 109.47582 * 299.99826 * 3 2 1 36 36 H 1.09000 * 109.47120 * 60.00100 * 4 3 2 37 37 H 1.08997 * 109.46824 * 299.99730 * 4 3 2 38 38 H 0.97009 * 120.00180 * 0.02562 * 7 5 4 39 39 H 1.09004 * 109.18264 * 45.37378 * 10 8 7 40 40 H 1.09001 * 109.18576 * 286.13141 * 10 8 7 41 41 H 1.09001 * 109.96269 * 319.73527 * 11 10 8 42 42 H 1.09000 * 109.96464 * 198.43547 * 11 10 8 43 43 H 1.09003 * 109.46558 * 330.01942 * 16 15 14 44 44 H 1.08999 * 109.47347 * 210.02982 * 16 15 14 45 45 H 0.97000 * 120.00577 * 0.02562 * 17 16 15 46 46 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 47 47 H 1.08999 * 110.11905 * 307.08340 * 27 26 12 48 48 H 1.09002 * 109.95377 * 185.73666 * 27 26 12 49 49 H 1.09002 * 109.15308 * 314.85033 * 28 8 7 50 50 H 1.09007 * 109.14416 * 74.06115 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8634 0.0000 6 8 3.2840 3.7853 -0.0004 7 7 5.3971 3.1098 0.0009 8 6 5.8855 4.4910 -0.0002 9 1 5.1630 5.1018 0.5413 10 6 5.9245 4.9716 -1.4306 11 6 6.0828 6.4990 -1.4932 12 6 7.5508 6.8012 -1.2470 13 7 8.4049 7.3264 -2.0729 14 7 9.5544 7.4178 -1.4941 15 6 9.4721 6.9526 -0.2725 16 6 10.5881 6.8765 0.7374 17 7 10.6209 8.1125 1.5230 18 6 11.5580 8.2726 2.5086 19 1 12.2731 7.4879 2.7064 20 6 11.5888 9.4436 3.2534 21 7 10.7170 10.3998 3.0126 22 14 12.8676 9.6623 4.5974 23 1 12.6886 10.9891 5.2398 24 1 12.7033 8.5937 5.6155 25 1 14.2270 9.5776 4.0059 26 7 8.1996 6.5501 -0.0949 27 6 7.5855 5.9670 1.1129 28 6 7.1884 4.5255 0.7595 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.9337 0.9287 -0.8891 37 1 3.9329 0.9290 0.8909 38 1 6.0276 2.3726 0.0016 39 1 4.9981 4.6869 -1.9295 40 1 6.7648 4.5032 -1.9431 41 1 5.4717 6.9683 -0.7222 42 1 5.7875 6.8638 -2.4770 43 1 11.5388 6.7498 0.2193 44 1 10.4203 6.0283 1.4011 45 1 9.9785 8.8172 1.3456 46 1 10.0532 10.2863 2.3145 47 1 6.7009 6.5373 1.3963 48 1 8.3050 5.9642 1.9317 49 1 7.0821 3.9485 1.6781 50 1 7.9717 4.0799 0.1461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127944034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:50 Heat of formation + Delta-G solvation = 33.237236 kcal Electronic energy + Delta-G solvation = -28909.665164 eV Core-core repulsion = 24972.778550 eV Total energy + Delta-G solvation = -3936.886614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.09901 -40.42862 -37.83428 -35.76411 -35.40939 -34.68489 -33.59676 -31.73328 -31.51029 -30.56549 -29.29379 -26.62151 -25.75493 -24.66092 -24.26494 -22.97257 -21.71072 -21.34416 -20.75080 -20.66565 -20.02739 -17.62158 -17.38640 -17.12436 -16.69245 -16.43137 -15.77134 -15.24035 -15.18135 -15.00195 -14.51434 -14.47912 -14.17710 -13.80577 -13.70175 -13.32841 -13.26915 -13.12067 -12.93318 -12.78748 -12.73211 -12.44017 -12.08676 -11.89279 -11.79753 -11.66041 -11.57619 -11.44193 -11.19797 -11.03338 -11.02454 -10.77721 -10.76483 -10.25296 -10.05681 -10.03273 -9.94239 -9.53081 -9.34927 -9.02218 -8.75459 -7.16415 -6.19280 -3.22163 2.04723 2.27593 2.62130 2.68037 3.14203 3.47380 3.51614 3.69002 4.03157 4.22955 4.27155 4.36207 4.37779 4.47537 4.50156 4.59506 4.70641 4.77109 4.80620 4.82716 4.87049 5.00361 5.01416 5.05297 5.18752 5.24271 5.27798 5.36056 5.37444 5.38909 5.49623 5.51734 5.60143 5.66020 5.69883 5.71197 5.73779 5.80117 5.82087 5.92084 6.04580 6.10051 6.20998 6.44509 6.48933 7.06147 7.07136 7.68087 7.83985 8.65475 9.04302 9.07290 9.94822 10.08196 11.28285 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002122 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.952454 B =13189.023358 C =14134.056344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.142 4.142 5 C 0.512 3.488 6 O -0.537 6.537 7 N -0.732 5.732 8 C 0.141 3.859 9 H 0.089 0.911 10 C -0.124 4.124 11 C -0.024 4.024 12 C 0.160 3.840 13 N -0.296 5.296 14 N -0.293 5.293 15 C 0.189 3.811 16 C 0.243 3.757 17 N -0.735 5.735 18 C -0.340 4.340 19 H 0.069 0.931 20 C -0.040 4.040 21 N -0.937 5.937 22 Si 1.083 2.917 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.293 1.293 26 N -0.462 5.462 27 C 0.110 3.890 28 C -0.142 4.142 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.400 0.600 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.057 0.943 44 H 0.038 0.962 45 H 0.370 0.630 46 H 0.255 0.745 47 H 0.098 0.902 48 H 0.116 0.884 49 H 0.095 0.905 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.760 -23.851 -5.181 30.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.182 4.182 5 C 0.298 3.702 6 O -0.413 6.413 7 N -0.384 5.384 8 C 0.037 3.963 9 H 0.107 0.893 10 C -0.163 4.163 11 C -0.064 4.064 12 C -0.108 4.108 13 N -0.136 5.136 14 N -0.133 5.133 15 C -0.079 4.079 16 C 0.113 3.887 17 N -0.382 5.382 18 C -0.470 4.470 19 H 0.087 0.913 20 C -0.238 4.238 21 N -0.581 5.581 22 Si 0.913 3.087 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.220 1.220 26 N -0.153 5.153 27 C -0.014 4.014 28 C -0.180 4.180 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.203 0.797 46 H 0.067 0.933 47 H 0.116 0.884 48 H 0.134 0.866 49 H 0.114 0.886 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.010 -21.717 -5.205 28.072 hybrid contribution -0.829 -1.775 -0.127 1.963 sum -17.838 -23.492 -5.332 29.975 Atomic orbital electron populations 1.21763 0.95622 1.01598 1.02098 1.21549 0.96256 0.96509 1.01970 1.21386 0.92532 0.96706 1.03730 1.21723 0.98353 0.93657 1.04421 1.20813 0.82056 0.91910 0.75377 1.90727 1.55160 1.46507 1.48896 1.46288 1.07297 1.08672 1.76143 1.20374 0.95987 0.83446 0.96472 0.89284 1.21689 1.03454 0.94933 0.96261 1.20376 0.85745 0.95588 1.04688 1.24648 0.98255 1.03237 0.84680 1.74199 0.96540 1.17171 1.25652 1.74582 1.15486 1.18907 1.04314 1.25277 0.86202 0.99590 0.96816 1.18973 0.90414 0.91487 0.87799 1.42291 1.39836 1.15374 1.40721 1.19983 1.11004 1.04082 1.11921 0.91311 1.25866 1.02984 0.92312 1.02623 1.70882 1.19260 1.34145 1.33860 0.83210 0.74462 0.75926 0.75090 1.20969 1.22171 1.22033 1.46066 1.09442 1.46785 1.13024 1.22324 1.00259 0.92722 0.86082 1.21935 0.97336 0.96901 1.01871 0.92609 0.92628 0.92751 0.92000 0.91985 0.91148 0.91154 0.88895 0.88871 0.76580 0.89884 0.91212 0.89364 0.87734 0.92510 0.94495 0.79687 0.93341 0.88406 0.86570 0.88618 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.13 -0.59 5.93 -26.73 -0.16 -0.75 16 3 C -0.11 -0.65 4.50 -26.73 -0.12 -0.77 16 4 C -0.14 -0.71 5.70 -27.88 -0.16 -0.87 16 5 C 0.51 4.16 7.58 -10.99 -0.08 4.07 16 6 O -0.54 -6.56 15.54 5.55 0.09 -6.48 16 7 N -0.73 -4.76 4.89 -55.87 -0.27 -5.04 16 8 C 0.14 1.17 1.95 -70.03 -0.14 1.03 16 9 H 0.09 0.87 6.90 -51.93 -0.36 0.51 16 10 C -0.12 -1.14 5.14 -27.41 -0.14 -1.28 16 11 C -0.02 -0.26 6.02 -26.94 -0.16 -0.42 16 12 C 0.16 2.48 7.03 -155.75 -1.09 1.38 16 13 N -0.30 -5.77 12.23 32.84 0.40 -5.37 16 14 N -0.29 -6.27 12.24 32.71 0.40 -5.87 16 15 C 0.19 3.62 7.45 -155.38 -1.16 2.46 16 16 C 0.24 4.94 6.48 -5.20 -0.03 4.90 16 17 N -0.73 -18.47 5.59 -61.09 -0.34 -18.81 16 18 C -0.34 -9.35 9.99 -15.06 -0.15 -9.50 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 21 N -0.94 -28.96 13.70 55.49 0.76 -28.20 16 22 Si 1.08 25.37 29.92 -169.99 -5.09 20.29 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 N -0.46 -7.06 2.70 -109.58 -0.30 -7.35 16 27 C 0.11 1.23 6.48 -3.16 -0.02 1.21 16 28 C -0.14 -1.14 5.09 -27.47 -0.14 -1.28 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.23 8.14 -51.92 -0.42 -0.19 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.40 1.59 8.61 -40.82 -0.35 1.24 16 39 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 40 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 41 H 0.09 0.89 7.89 -51.93 -0.41 0.48 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.04 0.68 7.46 -51.93 -0.39 0.29 16 45 H 0.37 9.92 6.49 -40.82 -0.26 9.65 16 46 H 0.26 7.90 6.77 -40.82 -0.28 7.63 16 47 H 0.10 1.01 7.87 -51.93 -0.41 0.60 16 48 H 0.12 1.40 7.16 -51.93 -0.37 1.03 16 49 H 0.10 0.60 8.12 -51.93 -0.42 0.17 16 50 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -36.43 401.39 -9.93 -46.36 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -8.34 Total: 5.86 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -3.28 Total: -1.43 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: 0.65 Total: -70.64 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: 0.09 Total: -6.48 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.09 Total: 20.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.43 -9.93 -46.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127944034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.598 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds