Wall clock time and date at job start Tue Mar 31 2020 20:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46559 * 2 1 4 4 C 1.53011 * 109.46747 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46913 * 179.97438 * 4 3 2 6 6 O 1.21288 * 120.00185 * 0.02562 * 5 4 3 7 7 N 1.34769 * 120.00175 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00499 * 179.97438 * 7 5 4 9 9 H 1.09005 * 107.87401 * 31.55960 * 8 7 5 10 10 C 1.50946 * 108.03152 * 275.00283 * 8 7 5 11 11 C 1.53683 * 110.95470 * 165.75097 * 10 8 7 12 12 C 1.51884 * 106.90053 * 79.08553 * 11 10 8 13 13 N 1.29896 * 127.80051 * 114.81251 * 12 11 10 14 14 N 1.29025 * 109.22384 * 180.25796 * 13 12 11 15 15 C 1.30974 * 109.70960 * 359.94927 * 14 13 12 16 16 C 1.50698 * 126.61655 * 179.90302 * 15 14 13 17 17 N 1.46490 * 109.47266 * 90.02065 * 16 15 14 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 N 1.34593 * 124.57851 * 295.20934 * 12 11 10 27 27 C 1.47505 * 125.02617 * 358.85839 * 26 12 11 28 28 C 1.50862 * 107.99835 * 148.08428 * 8 7 5 29 29 H 1.08996 * 109.47689 * 299.99998 * 1 2 3 30 30 H 1.08999 * 109.47596 * 60.00590 * 1 2 3 31 31 H 1.09010 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47228 * 240.00149 * 2 1 3 33 33 H 1.08997 * 109.46904 * 119.99664 * 2 1 3 34 34 H 1.09000 * 109.47229 * 60.00150 * 3 2 1 35 35 H 1.09000 * 109.47582 * 299.99826 * 3 2 1 36 36 H 1.09000 * 109.47120 * 60.00100 * 4 3 2 37 37 H 1.08997 * 109.46824 * 299.99730 * 4 3 2 38 38 H 0.97009 * 120.00180 * 0.02562 * 7 5 4 39 39 H 1.09004 * 109.18264 * 45.37378 * 10 8 7 40 40 H 1.09001 * 109.18576 * 286.13141 * 10 8 7 41 41 H 1.09001 * 109.96269 * 319.73527 * 11 10 8 42 42 H 1.09000 * 109.96464 * 198.43547 * 11 10 8 43 43 H 1.09003 * 109.46558 * 330.01942 * 16 15 14 44 44 H 1.08999 * 109.47347 * 210.02982 * 16 15 14 45 45 H 0.97000 * 120.00577 * 0.02562 * 17 16 15 46 46 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 47 47 H 1.08999 * 110.11905 * 307.08340 * 27 26 12 48 48 H 1.09002 * 109.95377 * 185.73666 * 27 26 12 49 49 H 1.09002 * 109.15308 * 314.85033 * 28 8 7 50 50 H 1.09007 * 109.14416 * 74.06115 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8634 0.0000 6 8 3.2840 3.7853 -0.0004 7 7 5.3971 3.1098 0.0009 8 6 5.8855 4.4910 -0.0002 9 1 5.1630 5.1018 0.5413 10 6 5.9245 4.9716 -1.4306 11 6 6.0828 6.4990 -1.4932 12 6 7.5508 6.8012 -1.2470 13 7 8.4049 7.3264 -2.0729 14 7 9.5544 7.4178 -1.4941 15 6 9.4721 6.9526 -0.2725 16 6 10.5881 6.8765 0.7374 17 7 10.6209 8.1125 1.5230 18 6 11.5580 8.2726 2.5086 19 1 12.2731 7.4879 2.7064 20 6 11.5888 9.4436 3.2534 21 7 10.7170 10.3998 3.0126 22 14 12.8676 9.6623 4.5974 23 1 12.6886 10.9891 5.2398 24 1 12.7033 8.5937 5.6155 25 1 14.2270 9.5776 4.0059 26 7 8.1996 6.5501 -0.0949 27 6 7.5855 5.9670 1.1129 28 6 7.1884 4.5255 0.7595 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.9337 0.9287 -0.8891 37 1 3.9329 0.9290 0.8909 38 1 6.0276 2.3726 0.0016 39 1 4.9981 4.6869 -1.9295 40 1 6.7648 4.5032 -1.9431 41 1 5.4717 6.9683 -0.7222 42 1 5.7875 6.8638 -2.4770 43 1 11.5388 6.7498 0.2193 44 1 10.4203 6.0283 1.4011 45 1 9.9785 8.8172 1.3456 46 1 10.0532 10.2863 2.3145 47 1 6.7009 6.5373 1.3963 48 1 8.3050 5.9642 1.9317 49 1 7.0821 3.9485 1.6781 50 1 7.9717 4.0799 0.1461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127944034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:49 Heat of formation + Delta-G solvation = 9.303801 kcal Electronic energy + Delta-G solvation = -28910.702995 eV Core-core repulsion = 24972.778550 eV Total energy + Delta-G solvation = -3937.924445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.44151 -41.09654 -38.65637 -37.23677 -36.25628 -35.75247 -34.71751 -33.30488 -32.48614 -31.19823 -30.74034 -27.75601 -27.16855 -25.43611 -25.21591 -24.90376 -22.51689 -22.11260 -21.70209 -21.43342 -21.07851 -19.54465 -18.45882 -17.94015 -17.49053 -17.11979 -16.90384 -16.89175 -16.11150 -15.86301 -15.73976 -15.22943 -15.14293 -15.10829 -14.67505 -14.53469 -14.50173 -14.25321 -13.92751 -13.74882 -13.40767 -13.22276 -13.17693 -12.83541 -12.73497 -12.61871 -12.54534 -12.24149 -12.17760 -12.08170 -11.91773 -11.89037 -11.82946 -11.46900 -11.43675 -11.39053 -11.27550 -11.01266 -10.79844 -10.26801 -10.12328 -9.24932 -8.44110 -5.41722 0.71370 1.42546 1.60595 1.66931 1.70808 1.71171 1.86896 2.10233 2.71289 3.07157 3.26931 3.36976 3.39163 3.56862 3.67049 3.77322 3.78411 3.87346 3.93544 3.98914 4.08239 4.13064 4.19891 4.23867 4.35711 4.46617 4.48736 4.50217 4.56758 4.66778 4.73862 4.79728 4.81903 4.92365 4.94733 4.96712 4.97371 5.00518 5.05771 5.11608 5.12798 5.29414 5.40263 5.42591 5.52601 5.53285 5.82972 6.40912 6.55830 6.94716 7.28379 7.62903 7.84015 7.98064 9.06286 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002122 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.952454 B =13189.023358 C =14134.056344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.134 4.134 5 C 0.509 3.491 6 O -0.583 6.583 7 N -0.719 5.719 8 C 0.145 3.855 9 H 0.078 0.922 10 C -0.113 4.113 11 C -0.022 4.022 12 C 0.179 3.821 13 N -0.337 5.337 14 N -0.334 5.334 15 C 0.177 3.823 16 C 0.248 3.752 17 N -0.747 5.747 18 C -0.335 4.335 19 H 0.081 0.919 20 C -0.101 4.101 21 N -0.972 5.972 22 Si 1.132 2.868 23 H -0.297 1.297 24 H -0.269 1.269 25 H -0.278 1.278 26 N -0.453 5.453 27 C 0.100 3.900 28 C -0.127 4.127 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.416 0.584 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.357 0.643 46 H 0.239 0.761 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.123 0.877 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.930 -26.960 -4.232 32.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.143 4.143 4 C -0.174 4.174 5 C 0.297 3.703 6 O -0.462 6.462 7 N -0.371 5.371 8 C 0.040 3.960 9 H 0.097 0.903 10 C -0.153 4.153 11 C -0.063 4.063 12 C -0.090 4.090 13 N -0.176 5.176 14 N -0.174 5.174 15 C -0.093 4.093 16 C 0.120 3.880 17 N -0.393 5.393 18 C -0.466 4.466 19 H 0.099 0.901 20 C -0.292 4.292 21 N -0.620 5.620 22 Si 0.956 3.044 23 H -0.224 1.224 24 H -0.194 1.194 25 H -0.204 1.204 26 N -0.143 5.143 27 C -0.021 4.021 28 C -0.165 4.165 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.253 0.747 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.188 0.812 46 H 0.050 0.950 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.141 0.859 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.163 -24.925 -4.270 30.562 hybrid contribution -0.865 -0.875 -0.495 1.326 sum -18.028 -25.799 -4.765 31.832 Atomic orbital electron populations 1.21798 0.96141 1.01955 1.01553 1.21523 0.95825 0.95501 1.02948 1.21340 0.93654 0.97327 1.01959 1.21747 0.97201 0.91803 1.06623 1.21383 0.81968 0.92709 0.74238 1.90716 1.56340 1.48090 1.51101 1.46128 1.07265 1.08417 1.75267 1.20211 0.95820 0.84401 0.95585 0.90342 1.21589 1.03365 0.93249 0.97054 1.20626 0.82780 0.97243 1.05602 1.25380 0.99329 1.00436 0.83842 1.74105 0.96812 1.19521 1.27163 1.74464 1.17087 1.20175 1.05711 1.24907 0.87491 1.00696 0.96180 1.18978 0.90783 0.90318 0.87948 1.42453 1.39191 1.16632 1.40997 1.20396 1.10769 1.03970 1.11467 0.90119 1.27354 1.04357 0.92389 1.05111 1.71013 1.20661 1.35648 1.34651 0.82587 0.72785 0.75850 0.73168 1.22364 1.19428 1.20416 1.46235 1.08181 1.45873 1.14053 1.22680 1.00221 0.94783 0.84450 1.21836 0.96910 0.94708 1.03085 0.93210 0.93205 0.91913 0.90957 0.90940 0.93002 0.92979 0.86599 0.86477 0.74677 0.89537 0.91577 0.88040 0.86998 0.93222 0.91466 0.81167 0.95022 0.87310 0.87089 0.85854 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.12 -0.89 5.93 30.59 0.18 -0.70 16 3 C -0.10 -1.16 4.50 30.60 0.14 -1.02 16 4 C -0.13 -0.96 5.70 29.85 0.17 -0.79 16 5 C 0.51 7.13 7.58 87.66 0.66 7.79 16 6 O -0.58 -13.71 15.54 -3.05 -0.05 -13.76 16 7 N -0.72 -7.15 4.89 -449.06 -2.20 -9.35 16 8 C 0.14 2.02 1.95 43.63 0.08 2.11 16 9 H 0.08 1.35 6.90 -2.38 -0.02 1.34 16 10 C -0.11 -1.86 5.14 30.16 0.16 -1.71 16 11 C -0.02 -0.46 6.02 30.46 0.18 -0.28 16 12 C 0.18 5.46 7.03 138.83 0.98 6.44 16 13 N -0.34 -13.31 12.23 -50.00 -0.61 -13.93 16 14 N -0.33 -14.63 12.24 -50.43 -0.62 -15.25 16 15 C 0.18 6.78 7.45 138.12 1.03 7.81 16 16 C 0.25 9.99 6.48 85.63 0.56 10.55 16 17 N -0.75 -37.79 5.59 -347.20 -1.94 -39.73 16 18 C -0.34 -18.32 9.99 84.03 0.84 -17.48 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.10 -5.78 5.50 84.86 0.47 -5.31 16 21 N -0.97 -61.24 13.70 21.65 0.30 -60.95 16 22 Si 1.13 50.54 29.92 68.60 2.05 52.59 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 26 N -0.45 -13.51 2.70 -500.60 -1.35 -14.86 16 27 C 0.10 2.08 6.48 86.40 0.56 2.64 16 28 C -0.13 -1.67 5.09 30.12 0.15 -1.51 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 35 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 36 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.42 1.66 8.61 -92.70 -0.80 0.86 16 39 H 0.09 1.44 7.92 -2.39 -0.02 1.42 16 40 H 0.07 1.17 7.91 -2.39 -0.02 1.15 16 41 H 0.10 1.88 7.89 -2.39 -0.02 1.87 16 42 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.07 2.33 7.46 -2.39 -0.02 2.31 16 45 H 0.36 19.69 6.49 -92.71 -0.60 19.08 16 46 H 0.24 15.34 6.77 -92.71 -0.63 14.71 16 47 H 0.11 2.05 7.87 -2.39 -0.02 2.03 16 48 H 0.11 2.47 7.16 -2.39 -0.02 2.45 16 49 H 0.12 1.03 8.12 -2.39 -0.02 1.01 16 50 H 0.08 1.12 8.07 -2.38 -0.02 1.10 16 Total: -1.00 -81.69 401.39 2.14 -79.54 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.31 Total: 27.83 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.87 Total: 7.86 kcal Atomic # 7 Polarization: -147.64 SS G_CDS: -6.42 Total: -154.06 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.05 Total: -13.76 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.05 Total: 52.59 kcal Total: -81.69 2.14 -79.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127944034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.849 kcal (2) G-P(sol) polarization free energy of solvation -81.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds