Wall clock time and date at job start Tue Mar 31 2020 20:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 2 1 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 2 1 8 8 C 1.46504 * 119.99735 * 179.97438 * 7 5 2 9 9 H 1.08997 * 107.88098 * 321.54628 * 8 7 5 10 10 C 1.50948 * 108.03340 * 78.06628 * 8 7 5 11 11 C 1.53667 * 110.95899 * 194.29132 * 10 8 7 12 12 C 1.51887 * 106.89866 * 280.90447 * 11 10 8 13 13 N 1.29896 * 127.80730 * 245.28897 * 12 11 10 14 14 N 1.29030 * 109.22715 * 179.62608 * 13 12 11 15 15 C 1.30973 * 109.70143 * 0.06825 * 14 13 12 16 16 C 1.50708 * 126.60782 * 180.08746 * 15 14 13 17 17 N 1.46492 * 109.46970 * 270.00143 * 16 15 14 18 18 C 1.36940 * 119.99790 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00267 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99996 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00303 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47156 * 89.99866 * 22 20 18 24 24 H 1.48502 * 109.47202 * 209.99525 * 22 20 18 25 25 H 1.48504 * 109.47242 * 329.99678 * 22 20 18 26 26 N 1.34597 * 124.57296 * 65.08208 * 12 11 10 27 27 C 1.47494 * 125.03535 * 0.53414 * 26 12 11 28 28 C 1.50868 * 108.02257 * 204.99906 * 8 7 5 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 36 36 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 38 38 H 0.96998 * 119.99962 * 359.97438 * 7 5 2 39 39 H 1.09010 * 109.17645 * 314.67379 * 10 8 7 40 40 H 1.09001 * 109.18467 * 73.90318 * 10 8 7 41 41 H 1.09003 * 109.96556 * 161.56168 * 11 10 8 42 42 H 1.08994 * 109.96823 * 40.24978 * 11 10 8 43 43 H 1.08998 * 109.46760 * 29.99841 * 16 15 14 44 44 H 1.09001 * 109.46873 * 149.99750 * 16 15 14 45 45 H 0.96998 * 120.00570 * 359.97438 * 17 16 15 46 46 H 0.96994 * 120.00133 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.93095 * 174.63680 * 27 26 12 48 48 H 1.08997 * 109.93855 * 53.42389 * 27 26 12 49 49 H 1.09008 * 109.14521 * 285.97851 * 28 8 7 50 50 H 1.08993 * 109.15274 * 45.13706 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 8 1.2443 -1.1715 -2.0287 7 7 3.3575 -0.8338 -1.4435 8 6 3.8458 -1.5248 -2.6396 9 1 3.1912 -2.3765 -2.8247 10 6 3.7222 -0.5786 -3.8091 11 6 3.8749 -1.3287 -5.1416 12 6 5.3619 -1.5540 -5.3535 13 7 6.1174 -1.0580 -6.2865 14 7 7.3260 -1.4792 -6.1233 15 6 7.3827 -2.2635 -5.0759 16 6 8.6068 -2.9602 -4.5399 17 7 8.7337 -4.2772 -5.1689 18 6 9.7782 -5.0975 -4.8351 19 1 10.5086 -4.7735 -4.1086 20 6 9.8987 -6.3452 -5.4315 21 7 9.0089 -6.7400 -6.3173 22 14 11.3239 -7.4639 -4.9767 23 1 10.9319 -8.3244 -3.8317 24 1 11.6739 -8.3177 -6.1403 25 1 12.4989 -6.6392 -4.5966 26 7 6.1365 -2.3273 -4.5701 27 6 5.6646 -3.0833 -3.3949 28 6 5.2270 -2.0536 -2.3419 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -0.2075 2.1392 38 1 3.9878 -0.4653 -0.8050 39 1 2.7444 -0.0976 -3.7788 40 1 4.4976 0.1840 -3.7364 41 1 3.4698 -0.7276 -5.9556 42 1 3.3568 -2.2863 -5.0911 43 1 9.4914 -2.3640 -4.7637 44 1 8.5132 -3.0804 -3.4606 45 1 8.0776 -4.5685 -5.8212 46 1 9.0930 -7.6120 -6.7337 47 1 6.4730 -3.6985 -2.9996 48 1 4.8192 -3.7128 -3.6728 49 1 5.9342 -1.2240 -2.3378 50 1 5.2252 -2.5256 -1.3595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128059005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:30 Heat of formation + Delta-G solvation = 39.914471 kcal Electronic energy + Delta-G solvation = -29686.408872 eV Core-core repulsion = 25749.811805 eV Total energy + Delta-G solvation = -3936.597067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.86 seconds Orbital eigenvalues (eV) -43.00705 -40.73771 -37.92472 -35.96765 -35.20544 -34.58096 -33.41150 -31.49417 -31.17833 -29.39138 -27.86686 -27.62957 -26.49450 -25.84082 -24.25903 -23.22859 -22.88021 -21.28395 -20.57605 -20.13244 -19.58459 -17.50857 -17.15836 -17.10158 -16.62980 -15.76954 -15.52623 -15.03142 -14.87223 -14.76984 -14.63027 -14.36664 -14.02384 -13.84409 -13.53041 -13.30529 -12.94997 -12.87636 -12.80123 -12.74130 -12.56067 -12.45574 -12.24577 -12.19011 -11.93949 -11.74674 -11.54799 -11.44422 -11.42076 -11.13829 -11.05572 -10.92328 -10.87288 -10.19000 -10.08540 -9.93844 -9.90690 -9.79661 -9.46472 -9.01402 -8.68259 -7.08507 -5.85058 -3.17469 2.14264 2.31512 2.70149 2.71623 3.23437 3.38428 3.44423 3.46487 4.07166 4.14234 4.26491 4.34346 4.37652 4.44117 4.51244 4.55432 4.71471 4.78862 4.88044 4.94267 5.03484 5.07557 5.09904 5.14491 5.20801 5.29816 5.33162 5.33624 5.40901 5.41342 5.44237 5.52209 5.59844 5.66608 5.71303 5.73619 5.77785 5.85720 5.89364 5.95025 6.09759 6.18686 6.28986 6.53687 6.57860 7.11162 7.16067 7.59593 7.87892 8.30095 9.13643 9.42648 9.93431 10.29612 11.37005 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.002469 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.379733 B =11338.412136 C =12191.076850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.523 3.477 6 O -0.534 6.534 7 N -0.729 5.729 8 C 0.144 3.856 9 H 0.085 0.915 10 C -0.124 4.124 11 C -0.023 4.023 12 C 0.159 3.841 13 N -0.296 5.296 14 N -0.294 5.294 15 C 0.193 3.807 16 C 0.237 3.763 17 N -0.724 5.724 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.008 4.008 21 N -0.928 5.928 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 N -0.462 5.462 27 C 0.111 3.889 28 C -0.142 4.142 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.399 0.601 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.117 0.883 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.981 14.977 18.028 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.309 3.691 6 O -0.410 6.410 7 N -0.380 5.380 8 C 0.040 3.960 9 H 0.103 0.897 10 C -0.164 4.164 11 C -0.063 4.063 12 C -0.109 4.109 13 N -0.136 5.136 14 N -0.134 5.134 15 C -0.075 4.075 16 C 0.107 3.893 17 N -0.370 5.370 18 C -0.378 4.378 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.576 5.576 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 N -0.153 5.153 27 C -0.013 4.013 28 C -0.181 4.181 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.233 0.767 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.221 0.779 46 H 0.067 0.933 47 H 0.135 0.865 48 H 0.116 0.884 49 H 0.098 0.902 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.948 15.352 16.298 28.081 hybrid contribution 0.536 -1.377 1.334 1.991 sum -16.412 13.975 17.632 27.849 Atomic orbital electron populations 1.21666 0.91832 1.02944 1.02109 1.20839 0.98192 0.96419 0.93624 1.21873 1.01178 0.93747 1.03055 1.21874 1.01177 1.00743 0.96061 1.20601 0.82085 0.79219 0.87198 1.90713 1.55259 1.48010 1.47027 1.46273 1.07237 1.59282 1.25238 1.20371 0.95192 0.95698 0.84729 0.89699 1.21681 1.03518 0.98506 0.92685 1.20355 0.85460 1.02107 0.98394 1.24625 0.96996 0.97031 0.92234 1.74189 0.97538 1.22041 1.19851 1.74577 1.12045 1.12680 1.14055 1.25249 0.87610 1.00277 0.94358 1.19050 0.88076 0.87328 0.94820 1.42295 1.31856 1.12374 1.50513 1.19175 1.02823 0.95899 1.19903 0.90739 1.24795 0.98846 0.97953 0.98931 1.69680 1.36354 1.20826 1.30694 0.86135 0.81762 0.80584 0.77320 1.21636 1.21655 1.20556 1.46034 1.08454 1.36394 1.24438 1.22297 1.02408 0.93500 0.83072 1.21926 0.96287 0.99928 0.99956 0.91873 0.91867 0.92017 0.91256 0.92149 0.91939 0.91919 0.92130 0.91268 0.76654 0.89769 0.91264 0.87817 0.89413 0.92582 0.94614 0.77923 0.93290 0.86467 0.88440 0.90205 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 7.76 37.16 0.29 -0.55 16 2 C -0.09 -0.53 0.87 -155.66 -0.14 -0.66 16 3 C -0.14 -0.65 8.37 37.16 0.31 -0.34 16 4 C -0.14 -0.64 8.37 37.16 0.31 -0.33 16 5 C 0.52 4.55 6.09 -10.99 -0.07 4.49 16 6 O -0.53 -6.73 15.10 5.56 0.08 -6.65 16 7 N -0.73 -5.08 4.78 -55.87 -0.27 -5.34 16 8 C 0.14 1.22 1.90 -70.03 -0.13 1.08 16 9 H 0.08 0.83 7.13 -51.93 -0.37 0.46 16 10 C -0.12 -1.20 5.09 -27.42 -0.14 -1.34 16 11 C -0.02 -0.26 6.02 -26.95 -0.16 -0.42 16 12 C 0.16 2.50 7.03 -155.74 -1.09 1.41 16 13 N -0.30 -5.84 12.23 32.84 0.40 -5.44 16 14 N -0.29 -6.33 12.25 32.71 0.40 -5.93 16 15 C 0.19 3.70 7.45 -155.38 -1.16 2.54 16 16 C 0.24 4.75 6.48 -5.19 -0.03 4.72 16 17 N -0.72 -18.16 5.59 -61.09 -0.34 -18.50 16 18 C -0.25 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 22 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 N -0.46 -7.12 2.72 -109.58 -0.30 -7.42 16 27 C 0.11 1.25 6.47 -3.17 -0.02 1.23 16 28 C -0.14 -1.14 5.05 -27.47 -0.14 -1.28 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.23 7.56 -51.93 -0.39 -0.17 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 37 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.40 1.88 7.37 -40.82 -0.30 1.58 16 39 H 0.08 0.84 7.23 -51.92 -0.38 0.47 16 40 H 0.07 0.72 7.91 -51.93 -0.41 0.30 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 0.91 7.89 -51.93 -0.41 0.50 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.64 7.46 -51.93 -0.39 0.25 16 45 H 0.39 10.66 7.66 -40.82 -0.31 10.35 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.12 1.39 7.16 -51.93 -0.37 1.02 16 48 H 0.10 1.01 7.87 -51.93 -0.41 0.60 16 49 H 0.08 0.69 8.08 -51.92 -0.42 0.27 16 50 H 0.10 0.57 8.12 -51.93 -0.42 0.15 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -35.33 397.38 -9.07 -44.40 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -8.32 Total: 5.88 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.42 Total: 3.36 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: 0.62 Total: -69.84 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: 0.08 Total: -6.65 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.33 -9.07 -44.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128059005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.318 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.86 seconds