Wall clock time and date at job start Tue Mar 31 2020 20:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 2 1 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 2 1 8 8 C 1.46504 * 119.99735 * 179.97438 * 7 5 2 9 9 H 1.08997 * 107.88098 * 321.54628 * 8 7 5 10 10 C 1.50948 * 108.03340 * 78.06628 * 8 7 5 11 11 C 1.53667 * 110.95899 * 194.29132 * 10 8 7 12 12 C 1.51887 * 106.89866 * 280.90447 * 11 10 8 13 13 N 1.29896 * 127.80730 * 245.28897 * 12 11 10 14 14 N 1.29030 * 109.22715 * 179.62608 * 13 12 11 15 15 C 1.30973 * 109.70143 * 0.06825 * 14 13 12 16 16 C 1.50708 * 126.60782 * 180.08746 * 15 14 13 17 17 N 1.46492 * 109.46970 * 270.00143 * 16 15 14 18 18 C 1.36940 * 119.99790 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00267 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99996 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00303 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47156 * 89.99866 * 22 20 18 24 24 H 1.48502 * 109.47202 * 209.99525 * 22 20 18 25 25 H 1.48504 * 109.47242 * 329.99678 * 22 20 18 26 26 N 1.34597 * 124.57296 * 65.08208 * 12 11 10 27 27 C 1.47494 * 125.03535 * 0.53414 * 26 12 11 28 28 C 1.50868 * 108.02257 * 204.99906 * 8 7 5 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 36 36 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 38 38 H 0.96998 * 119.99962 * 359.97438 * 7 5 2 39 39 H 1.09010 * 109.17645 * 314.67379 * 10 8 7 40 40 H 1.09001 * 109.18467 * 73.90318 * 10 8 7 41 41 H 1.09003 * 109.96556 * 161.56168 * 11 10 8 42 42 H 1.08994 * 109.96823 * 40.24978 * 11 10 8 43 43 H 1.08998 * 109.46760 * 29.99841 * 16 15 14 44 44 H 1.09001 * 109.46873 * 149.99750 * 16 15 14 45 45 H 0.96998 * 120.00570 * 359.97438 * 17 16 15 46 46 H 0.96994 * 120.00133 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.93095 * 174.63680 * 27 26 12 48 48 H 1.08997 * 109.93855 * 53.42389 * 27 26 12 49 49 H 1.09008 * 109.14521 * 285.97851 * 28 8 7 50 50 H 1.08993 * 109.15274 * 45.13706 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 8 1.2443 -1.1715 -2.0287 7 7 3.3575 -0.8338 -1.4435 8 6 3.8458 -1.5248 -2.6396 9 1 3.1912 -2.3765 -2.8247 10 6 3.7222 -0.5786 -3.8091 11 6 3.8749 -1.3287 -5.1416 12 6 5.3619 -1.5540 -5.3535 13 7 6.1174 -1.0580 -6.2865 14 7 7.3260 -1.4792 -6.1233 15 6 7.3827 -2.2635 -5.0759 16 6 8.6068 -2.9602 -4.5399 17 7 8.7337 -4.2772 -5.1689 18 6 9.7782 -5.0975 -4.8351 19 1 10.5086 -4.7735 -4.1086 20 6 9.8987 -6.3452 -5.4315 21 7 9.0089 -6.7400 -6.3173 22 14 11.3239 -7.4639 -4.9767 23 1 10.9319 -8.3244 -3.8317 24 1 11.6739 -8.3177 -6.1403 25 1 12.4989 -6.6392 -4.5966 26 7 6.1365 -2.3273 -4.5701 27 6 5.6646 -3.0833 -3.3949 28 6 5.2270 -2.0536 -2.3419 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -0.2075 2.1392 38 1 3.9878 -0.4653 -0.8050 39 1 2.7444 -0.0976 -3.7788 40 1 4.4976 0.1840 -3.7364 41 1 3.4698 -0.7276 -5.9556 42 1 3.3568 -2.2863 -5.0911 43 1 9.4914 -2.3640 -4.7637 44 1 8.5132 -3.0804 -3.4606 45 1 8.0776 -4.5685 -5.8212 46 1 9.0930 -7.6120 -6.7337 47 1 6.4730 -3.6985 -2.9996 48 1 4.8192 -3.7128 -3.6728 49 1 5.9342 -1.2240 -2.3378 50 1 5.2252 -2.5256 -1.3595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128059005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:27 Heat of formation + Delta-G solvation = 16.521697 kcal Electronic energy + Delta-G solvation = -29687.423259 eV Core-core repulsion = 25749.811805 eV Total energy + Delta-G solvation = -3937.611454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.35420 -41.41357 -38.74574 -36.93246 -36.55194 -35.72869 -34.57487 -33.26436 -32.11280 -30.89446 -28.19695 -28.17918 -27.83412 -27.04265 -25.41477 -24.73070 -23.87618 -22.37074 -21.64868 -21.26502 -20.28441 -19.38775 -18.26312 -17.74842 -17.50081 -17.04155 -16.60807 -16.22720 -16.10985 -15.80406 -15.55432 -15.34124 -15.11923 -14.77100 -14.61303 -14.34650 -14.30844 -14.00018 -13.87804 -13.44070 -13.28552 -13.16534 -13.04641 -12.94764 -12.85476 -12.77117 -12.66111 -12.60121 -12.51412 -12.19225 -12.11787 -11.95702 -11.90466 -11.86964 -11.78390 -11.36562 -11.19033 -11.01110 -10.62547 -10.21148 -10.08182 -9.12151 -7.97334 -5.30288 0.80632 1.48933 1.51768 1.52249 1.60552 1.65754 1.78776 2.08682 2.56364 3.13780 3.35096 3.37803 3.44853 3.56034 3.67107 3.76848 3.84487 3.91667 3.96489 3.98899 4.05951 4.18718 4.22512 4.29025 4.33218 4.48272 4.57167 4.64407 4.73048 4.74394 4.81370 4.84975 4.85909 4.95513 4.97264 4.98158 5.00995 5.03136 5.06451 5.08792 5.18364 5.25914 5.35691 5.36507 5.45040 5.48335 5.91709 6.19615 6.54227 7.26034 7.27517 7.71622 7.92527 8.19639 9.26068 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.002469 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.379733 B =11338.412136 C =12191.076850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.519 3.481 6 O -0.578 6.578 7 N -0.715 5.715 8 C 0.147 3.853 9 H 0.076 0.924 10 C -0.113 4.113 11 C -0.021 4.021 12 C 0.178 3.822 13 N -0.338 5.338 14 N -0.336 5.336 15 C 0.181 3.819 16 C 0.242 3.758 17 N -0.737 5.737 18 C -0.244 4.244 19 H 0.090 0.910 20 C -0.074 4.074 21 N -0.972 5.972 22 Si 0.980 3.020 23 H -0.281 1.281 24 H -0.301 1.301 25 H -0.266 1.266 26 N -0.454 5.454 27 C 0.101 3.899 28 C -0.128 4.128 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.413 0.587 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.370 0.630 46 H 0.251 0.749 47 H 0.115 0.885 48 H 0.108 0.892 49 H 0.080 0.920 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.942 15.660 21.261 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.087 4.087 3 C -0.196 4.196 4 C -0.196 4.196 5 C 0.307 3.693 6 O -0.457 6.457 7 N -0.367 5.367 8 C 0.043 3.957 9 H 0.095 0.905 10 C -0.153 4.153 11 C -0.061 4.061 12 C -0.092 4.092 13 N -0.177 5.177 14 N -0.176 5.176 15 C -0.088 4.088 16 C 0.113 3.887 17 N -0.381 5.381 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.266 4.266 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.208 1.208 24 H -0.228 1.228 25 H -0.190 1.190 26 N -0.144 5.144 27 C -0.020 4.020 28 C -0.166 4.166 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.251 0.749 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.201 0.799 46 H 0.060 0.940 47 H 0.133 0.867 48 H 0.126 0.874 49 H 0.098 0.902 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.881 16.085 19.609 30.467 hybrid contribution 0.425 -1.501 0.352 1.599 sum -16.457 14.584 19.961 29.698 Atomic orbital electron populations 1.21673 0.92571 1.01998 1.02339 1.20860 0.97625 0.97232 0.92985 1.21884 1.01969 0.92496 1.03289 1.21886 1.02102 1.00030 0.95607 1.21141 0.82088 0.78584 0.87491 1.90697 1.56391 1.49948 1.48675 1.46113 1.07105 1.58604 1.24864 1.20232 0.95366 0.95233 0.84895 0.90548 1.21568 1.03209 0.98342 0.92155 1.20581 0.82532 1.03252 0.99756 1.25312 0.98219 0.95032 0.90594 1.74092 0.97558 1.24063 1.22006 1.74458 1.13499 1.14169 1.15498 1.24952 0.88732 1.00554 0.94561 1.19091 0.88503 0.85031 0.96030 1.42448 1.31096 1.14018 1.50489 1.19648 1.02938 0.95897 1.19030 0.89225 1.25667 1.01622 0.99845 0.99489 1.69857 1.38640 1.21039 1.32631 0.85051 0.79027 0.78502 0.76582 1.20802 1.22849 1.19041 1.46216 1.07142 1.35972 1.25078 1.22665 1.02639 0.94324 0.82408 1.21831 0.95556 0.99133 1.00079 0.93457 0.93409 0.89937 0.89667 0.90876 0.93122 0.92976 0.90655 0.89749 0.74932 0.89879 0.91671 0.87225 0.88068 0.93051 0.91250 0.79856 0.94005 0.86706 0.87391 0.90172 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 7.76 71.98 0.56 -1.00 16 2 C -0.08 -0.84 0.87 -52.93 -0.05 -0.89 16 3 C -0.14 -0.91 8.37 71.98 0.60 -0.31 16 4 C -0.14 -0.85 8.37 71.98 0.60 -0.25 16 5 C 0.52 8.20 6.09 87.66 0.53 8.74 16 6 O -0.58 -14.26 15.10 -3.04 -0.05 -14.31 16 7 N -0.71 -8.09 4.78 -449.05 -2.15 -10.24 16 8 C 0.15 2.15 1.90 43.63 0.08 2.23 16 9 H 0.08 1.33 7.13 -2.39 -0.02 1.31 16 10 C -0.11 -2.00 5.09 30.15 0.15 -1.85 16 11 C -0.02 -0.45 6.02 30.45 0.18 -0.27 16 12 C 0.18 5.51 7.03 138.83 0.98 6.48 16 13 N -0.34 -13.53 12.23 -50.00 -0.61 -14.14 16 14 N -0.34 -14.80 12.25 -50.43 -0.62 -15.42 16 15 C 0.18 6.95 7.45 138.12 1.03 7.98 16 16 C 0.24 9.53 6.48 85.64 0.56 10.08 16 17 N -0.74 -36.96 5.59 -347.18 -1.94 -38.90 16 18 C -0.24 -13.04 9.99 84.03 0.84 -12.20 16 19 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 21 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 22 Si 0.98 44.85 29.55 68.60 2.03 46.88 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 N -0.45 -13.60 2.72 -500.62 -1.36 -14.96 16 27 C 0.10 2.08 6.47 86.40 0.56 2.64 16 28 C -0.13 -1.66 5.05 30.12 0.15 -1.51 16 29 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.07 0.30 7.56 -2.39 -0.02 0.28 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 0.24 7.56 -2.39 -0.02 0.22 16 37 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.41 2.40 7.37 -92.71 -0.68 1.72 16 39 H 0.08 1.56 7.23 -2.38 -0.02 1.54 16 40 H 0.06 1.23 7.91 -2.39 -0.02 1.21 16 41 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.10 1.96 7.89 -2.39 -0.02 1.94 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.07 2.30 7.46 -2.39 -0.02 2.28 16 45 H 0.37 20.83 7.66 -92.71 -0.71 20.12 16 46 H 0.25 14.96 8.31 -92.71 -0.77 14.18 16 47 H 0.11 2.47 7.16 -2.38 -0.02 2.45 16 48 H 0.11 2.02 7.87 -2.39 -0.02 2.00 16 49 H 0.08 1.12 8.08 -2.38 -0.02 1.10 16 50 H 0.13 0.96 8.12 -2.39 -0.02 0.94 16 Total: -1.00 -78.94 397.38 2.39 -76.55 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.44 Total: 27.59 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 7.25 Total: 16.18 kcal Atomic # 7 Polarization: -146.49 SS G_CDS: -6.40 Total: -152.89 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.05 Total: -14.31 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -78.94 2.39 -76.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128059005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.068 kcal (2) G-P(sol) polarization free energy of solvation -78.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds