Wall clock time and date at job start Tue Mar 31 2020 20:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47019 * 2 1 4 4 C 1.53002 * 109.47418 * 60.00325 * 3 2 1 5 5 C 1.52995 * 109.47244 * 299.99741 * 3 2 1 6 6 C 1.53000 * 109.47019 * 180.02562 * 3 2 1 7 7 C 1.50700 * 109.47172 * 180.02562 * 6 3 2 8 8 O 1.21285 * 120.00120 * 359.97438 * 7 6 3 9 9 N 1.34780 * 119.99926 * 179.97438 * 7 6 3 10 10 C 1.46501 * 120.00090 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.63923 * 34.29306 * 10 9 7 12 12 C 1.54323 * 110.71901 * 271.15854 * 10 9 7 13 13 N 1.47021 * 107.27045 * 219.43836 * 12 10 9 14 14 C 1.36940 * 125.64723 * 178.90578 * 13 12 10 15 15 H 1.07995 * 119.99976 * 174.91280 * 14 13 12 16 16 C 1.38818 * 120.00228 * 354.90714 * 14 13 12 17 17 N 1.31615 * 119.99771 * 7.06657 * 16 14 13 18 18 Si 1.86793 * 120.00129 * 187.06574 * 16 14 13 19 19 H 1.48502 * 109.47300 * 94.98666 * 18 16 14 20 20 H 1.48500 * 109.47350 * 214.98758 * 18 16 14 21 21 H 1.48500 * 109.47143 * 334.98728 * 18 16 14 22 22 C 1.47421 * 108.70520 * 358.94451 * 13 12 10 23 23 C 1.55123 * 104.94056 * 23.99749 * 22 13 12 24 24 H 1.08999 * 111.16439 * 205.12931 * 23 22 13 25 25 N 1.46500 * 110.93467 * 81.21805 * 23 22 13 26 26 C 1.35317 * 125.86857 * 332.95835 * 25 23 22 27 27 C 1.35347 * 106.17671 * 180.02562 * 26 25 23 28 28 N 1.33776 * 106.49864 * 359.97438 * 27 26 25 29 29 N 1.28638 * 108.88437 * 359.74170 * 28 27 26 30 30 H 1.09005 * 109.47385 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47348 * 299.99522 * 1 2 3 32 32 H 1.08995 * 109.47030 * 60.00291 * 1 2 3 33 33 H 1.09004 * 109.47259 * 239.99712 * 2 1 3 34 34 H 1.09004 * 109.46820 * 120.00252 * 2 1 3 35 35 H 1.09002 * 109.47451 * 180.02562 * 4 3 2 36 36 H 1.09007 * 109.46476 * 299.99598 * 4 3 2 37 37 H 1.08995 * 109.47077 * 59.99449 * 4 3 2 38 38 H 1.08996 * 109.47124 * 299.99952 * 5 3 2 39 39 H 1.08996 * 109.47232 * 60.00584 * 5 3 2 40 40 H 1.09002 * 109.47346 * 179.97438 * 5 3 2 41 41 H 1.09008 * 109.47328 * 299.99710 * 6 3 2 42 42 H 1.08996 * 109.47423 * 60.00003 * 6 3 2 43 43 H 0.96998 * 120.00161 * 0.02562 * 9 7 6 44 44 H 1.08992 * 109.88452 * 338.86054 * 12 10 9 45 45 H 1.09004 * 109.88223 * 100.02662 * 12 10 9 46 46 H 0.96999 * 120.00071 * 179.97438 * 17 16 14 47 47 H 1.08994 * 110.36694 * 142.96215 * 22 13 12 48 48 H 1.09004 * 110.36750 * 265.28938 * 22 13 12 49 49 H 1.07998 * 126.91043 * 0.02562 * 26 25 23 50 50 H 1.08000 * 126.75151 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1637 -1.2492 6 6 3.5699 1.4424 -0.0006 7 6 4.0723 2.8632 0.0000 8 8 3.2842 3.7851 0.0004 9 7 5.3974 3.1095 0.0001 10 6 5.8858 4.4907 0.0002 11 1 5.2193 5.1339 0.5748 12 6 6.0404 5.0152 -1.4430 13 7 7.2701 5.8198 -1.4855 14 6 7.7763 6.4459 -2.5933 15 1 8.6440 7.0827 -2.5044 16 6 7.1741 6.2620 -3.8305 17 7 6.0392 5.6013 -3.9182 18 14 7.9744 6.9523 -5.3706 19 1 8.8018 5.8996 -6.0129 20 1 6.9216 7.4006 -6.3172 21 1 8.8361 8.1056 -5.0063 22 6 7.8687 5.8402 -0.1384 23 6 7.3322 4.5616 0.5569 24 1 7.3284 4.6753 1.6410 25 7 8.1069 3.3842 0.1574 26 6 8.7732 3.2324 -1.0106 27 6 9.3439 2.0061 -0.9626 28 7 9.0039 1.4748 0.2171 29 7 8.2757 2.3185 0.8594 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.8930 3.1916 1.2491 36 1 0.4400 2.1637 1.2492 37 1 1.8933 1.6499 2.1392 38 1 1.8934 1.6499 -2.1392 39 1 0.4401 2.1638 -1.2492 40 1 1.8930 3.1915 -1.2490 41 1 3.9337 0.9285 0.8892 42 1 3.9329 0.9288 -0.8908 43 1 6.0277 2.3722 -0.0006 44 1 6.1215 4.1773 -2.1352 45 1 5.1829 5.6346 -1.7062 46 1 5.6182 5.4731 -4.7826 47 1 8.9561 5.8086 -0.2060 48 1 7.5471 6.7280 0.4061 49 1 8.8367 3.9462 -1.8186 50 1 9.9545 1.5472 -1.7261 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129014809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:30 Heat of formation + Delta-G solvation = 89.632829 kcal Electronic energy + Delta-G solvation = -31017.865173 eV Core-core repulsion = 27083.424055 eV Total energy + Delta-G solvation = -3934.441117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.94315 -40.08678 -38.31649 -36.82524 -34.17382 -33.41354 -31.79164 -30.92336 -30.53320 -29.14514 -28.09026 -27.09895 -27.01856 -24.90940 -23.92147 -22.62505 -22.19941 -20.92661 -20.18579 -19.87674 -18.58404 -17.61348 -17.15430 -16.80821 -15.87652 -15.37451 -15.22449 -14.82268 -14.73312 -14.63591 -14.46169 -14.11594 -14.03314 -13.53040 -13.28974 -13.21119 -12.76967 -12.51508 -12.37804 -12.21304 -11.96902 -11.74153 -11.70105 -11.51771 -11.35182 -11.11125 -11.09017 -11.01519 -10.85913 -10.78932 -10.60989 -10.54205 -10.46693 -10.43547 -10.24403 -10.00905 -9.75118 -9.21738 -8.96146 -8.84210 -8.63408 -7.16130 -5.94704 -3.33035 1.99726 2.64339 2.91830 2.92907 3.27264 3.33197 3.36252 3.40475 4.27897 4.51123 4.71311 4.74067 4.78757 4.85619 4.96301 5.06571 5.18080 5.22957 5.30945 5.41937 5.44266 5.50401 5.60241 5.61560 5.68771 5.71180 5.73911 5.79645 5.83325 5.91173 5.96028 6.01533 6.05425 6.05676 6.14143 6.17364 6.20246 6.24358 6.35271 6.52154 6.54275 6.65573 6.83349 7.04857 7.26667 7.34051 7.60423 7.74801 7.95621 8.52543 8.85824 8.93550 9.53631 10.13753 11.15325 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.004083 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.159865 B = 6856.746115 C = 8335.816289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.043 4.043 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.133 4.133 7 C 0.519 3.481 8 O -0.527 6.527 9 N -0.718 5.718 10 C 0.112 3.888 11 H 0.110 0.890 12 C 0.168 3.832 13 N -0.601 5.601 14 C -0.247 4.247 15 H 0.083 0.917 16 C 0.005 3.995 17 N -0.909 5.909 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.128 3.872 23 C 0.113 3.887 24 H 0.119 0.881 25 N -0.276 5.276 26 C -0.005 4.005 27 C -0.076 4.076 28 N -0.278 5.278 29 N -0.111 5.111 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.396 0.604 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.256 0.744 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.204 0.796 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 -7.982 8.083 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.044 4.044 4 C -0.211 4.211 5 C -0.212 4.212 6 C -0.173 4.173 7 C 0.306 3.694 8 O -0.404 6.404 9 N -0.370 5.370 10 C 0.005 3.995 11 H 0.128 0.872 12 C 0.043 3.957 13 N -0.329 5.329 14 C -0.374 4.374 15 H 0.101 0.899 16 C -0.194 4.194 17 N -0.554 5.554 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.001 3.999 23 C 0.009 3.991 24 H 0.136 0.864 25 N -0.069 5.069 26 C -0.156 4.156 27 C -0.233 4.233 28 N -0.144 5.144 29 N -0.090 5.090 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.232 0.768 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.220 0.780 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.663 -8.001 9.187 13.045 hybrid contribution 0.947 0.573 -1.974 2.263 sum -3.716 -7.428 7.213 11.001 Atomic orbital electron populations 1.21867 0.95875 1.01095 1.02262 1.21592 0.96130 0.95843 1.01642 1.20242 0.92001 0.94955 0.97190 1.22149 1.00650 1.02788 0.95508 1.22153 1.00493 1.03078 0.95492 1.21770 0.97275 0.94212 1.04040 1.20548 0.81808 0.91644 0.75415 1.90575 1.54346 1.46555 1.48973 1.45943 1.07395 1.08192 1.75487 1.22815 0.91486 0.83942 1.01304 0.87220 1.21641 0.89939 0.95654 0.88498 1.44488 1.24639 1.60065 1.03721 1.18997 1.10658 1.23629 0.84142 0.89925 1.24856 0.96953 0.99811 0.97757 1.69962 1.16786 1.44793 1.23889 0.86116 0.78365 0.78428 0.82925 1.21332 1.21634 1.20479 1.21968 0.97973 0.91756 0.88244 1.23397 0.91331 0.83495 1.00891 0.86361 1.47271 1.33361 1.13847 1.12396 1.24195 0.97793 1.00940 0.92687 1.23543 1.07086 0.94508 0.98136 1.75009 1.10917 1.22929 1.05589 1.78216 1.18040 0.92225 1.20486 0.93239 0.92442 0.92317 0.92114 0.92217 0.89693 0.92925 0.93824 0.93608 0.93004 0.89455 0.89276 0.89194 0.76844 0.92324 0.92492 0.93333 0.92263 0.92964 0.77960 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.21 37.16 0.34 -1.09 16 2 C -0.11 -1.16 4.99 -26.73 -0.13 -1.29 16 3 C -0.04 -0.53 0.54 -154.51 -0.08 -0.61 16 4 C -0.15 -1.91 7.82 37.16 0.29 -1.62 16 5 C -0.16 -2.13 7.82 37.16 0.29 -1.84 16 6 C -0.13 -1.70 4.77 -27.88 -0.13 -1.83 16 7 C 0.52 8.31 7.24 -10.98 -0.08 8.23 16 8 O -0.53 -9.74 11.03 5.55 0.06 -9.68 16 9 N -0.72 -11.62 5.07 -52.03 -0.26 -11.88 16 10 C 0.11 1.91 3.14 -66.10 -0.21 1.71 16 11 H 0.11 1.89 7.62 -51.93 -0.40 1.49 16 12 C 0.17 3.64 4.77 -3.06 -0.01 3.63 16 13 N -0.60 -12.89 2.25 -169.94 -0.38 -13.27 16 14 C -0.25 -5.97 10.07 -15.06 -0.15 -6.12 16 15 H 0.08 1.93 7.84 -52.49 -0.41 1.52 16 16 C 0.00 0.11 5.48 -17.43 -0.10 0.02 16 17 N -0.91 -24.56 10.36 55.49 0.57 -23.99 16 18 Si 0.91 20.31 29.56 -169.99 -5.02 15.28 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.13 2.16 6.20 -2.42 -0.01 2.14 16 23 C 0.11 1.72 4.07 -65.67 -0.27 1.46 16 24 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 25 N -0.28 -4.45 2.44 -52.58 -0.13 -4.58 16 26 C 0.00 -0.08 10.02 -17.05 -0.17 -0.25 16 27 C -0.08 -1.18 12.05 -17.74 -0.21 -1.40 16 28 N -0.28 -4.76 12.41 30.24 0.38 -4.38 16 29 N -0.11 -1.87 12.25 60.35 0.74 -1.13 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 32 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.26 5.51 -51.93 -0.29 0.98 16 36 H 0.05 0.60 6.43 -51.93 -0.33 0.26 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16 40 H 0.09 1.47 5.51 -51.93 -0.29 1.19 16 41 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.40 6.35 6.77 -40.82 -0.28 6.08 16 44 H 0.06 1.45 7.18 -51.93 -0.37 1.07 16 45 H 0.06 1.47 7.61 -51.93 -0.40 1.07 16 46 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.20 3.73 6.83 -52.49 -0.36 3.37 16 50 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -27.81 382.98 -6.81 -34.61 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.89 Total: 12.11 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.64 Total: 1.14 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.92 Total: -59.23 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.06 Total: -9.68 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.81 -6.81 -34.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129014809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.246 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds