Wall clock time and date at job start Tue Mar 31 2020 20:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47208 * 120.00353 * 2 1 3 5 5 C 1.53003 * 109.47427 * 64.99673 * 4 2 1 6 6 C 1.52998 * 109.46917 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46653 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00424 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00038 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00419 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.77895 * 36.78888 * 10 9 7 12 12 C 1.54330 * 110.72220 * 273.55342 * 10 9 7 13 13 N 1.47026 * 107.26840 * 219.44076 * 12 10 9 14 14 C 1.36935 * 125.64362 * 178.90400 * 13 12 10 15 15 H 1.08001 * 119.99939 * 180.02562 * 14 13 12 16 16 C 1.38813 * 120.00563 * 0.02562 * 14 13 12 17 17 N 1.31620 * 119.99425 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00494 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47178 * 59.99909 * 18 16 14 20 20 H 1.48495 * 109.47293 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46818 * 300.00219 * 18 16 14 22 22 C 1.47420 * 108.70428 * 358.94103 * 13 12 10 23 23 C 1.54907 * 104.83524 * 24.12518 * 22 13 12 24 24 H 1.09000 * 111.00618 * 204.91301 * 23 22 13 25 25 N 1.46499 * 111.00010 * 81.06591 * 23 22 13 26 26 C 1.35311 * 125.87301 * 326.45278 * 25 23 22 27 27 C 1.35345 * 106.17897 * 180.02562 * 26 25 23 28 28 N 1.33771 * 106.49623 * 0.02562 * 27 26 25 29 29 N 1.28633 * 108.88531 * 359.73735 * 28 27 26 30 30 H 1.09000 * 109.47012 * 60.00159 * 1 2 3 31 31 H 1.09000 * 109.47193 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46739 * 299.99712 * 1 2 3 33 33 H 1.09002 * 109.47182 * 239.99726 * 2 1 3 34 34 H 1.09001 * 109.46905 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47078 * 299.99800 * 3 2 1 36 36 H 1.08996 * 109.47110 * 60.00514 * 3 2 1 37 37 H 1.09001 * 109.46935 * 305.00061 * 4 2 1 38 38 H 1.08996 * 109.47205 * 184.99887 * 4 2 1 39 39 H 1.09001 * 109.46746 * 60.00273 * 5 4 2 40 40 H 1.08996 * 109.47103 * 300.00276 * 5 4 2 41 41 H 1.09001 * 109.47258 * 60.00502 * 6 5 4 42 42 H 1.08996 * 109.47391 * 300.00016 * 6 5 4 43 43 H 0.97005 * 119.99651 * 0.02562 * 9 7 6 44 44 H 1.08998 * 109.88224 * 100.02395 * 12 10 9 45 45 H 1.08998 * 109.88221 * 338.85788 * 12 10 9 46 46 H 0.97001 * 119.99700 * 179.97438 * 17 16 14 47 47 H 1.08997 * 110.36858 * 142.96748 * 22 13 12 48 48 H 1.08999 * 110.36307 * 265.28963 * 22 13 12 49 49 H 1.07997 * 126.90905 * 0.02562 * 26 25 23 50 50 H 1.08005 * 126.75596 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1879 6 6 2.1448 -2.9166 2.4375 7 6 1.7455 -4.3685 2.3774 8 8 1.1159 -4.7856 1.4284 9 7 2.0890 -5.2039 3.3778 10 6 1.7004 -6.6151 3.3197 11 1 1.7539 -6.9892 2.2973 12 6 0.2851 -6.8162 3.9013 13 7 0.3046 -8.0664 4.6747 14 6 -0.7522 -8.5918 5.3691 15 1 -0.6359 -9.5201 5.9086 16 6 -1.9731 -7.9314 5.3795 17 7 -2.1150 -6.8003 4.7215 18 14 -3.4146 -8.6477 6.3272 19 1 -3.0555 -8.7605 7.7638 20 1 -4.5948 -7.7586 6.1798 21 1 -3.7395 -9.9939 5.7910 22 6 1.6506 -8.6601 4.5797 23 6 2.5884 -7.4684 4.2635 24 1 3.4902 -7.8057 3.7525 25 7 2.9239 -6.7267 5.4815 26 6 2.1110 -6.5438 6.5477 27 6 2.8163 -5.8073 7.4376 28 7 4.0102 -5.5782 6.8796 29 7 4.0441 -6.1406 5.7232 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2619 2.1369 38 1 3.1263 -0.6444 1.2951 39 1 2.0699 -2.6550 0.3002 40 1 0.5490 -2.2725 1.1420 41 1 1.7098 -2.4570 3.3250 42 1 3.2310 -2.8397 2.4838 43 1 2.5929 -4.8704 4.1366 44 1 -0.4409 -6.8924 3.0918 45 1 0.0301 -5.9808 4.5533 46 1 -2.9682 -6.3389 4.7285 47 1 1.9296 -9.1214 5.5271 48 1 1.6854 -9.3942 3.7747 49 1 1.1023 -6.9115 6.6649 50 1 2.4811 -5.4707 8.4076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129279848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:43 Heat of formation + Delta-G solvation = 74.252312 kcal Electronic energy + Delta-G solvation = -30038.356497 eV Core-core repulsion = 26103.248431 eV Total energy + Delta-G solvation = -3935.108067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.94015 -39.69061 -37.99579 -36.98609 -34.17537 -33.39007 -32.81203 -31.73345 -30.53194 -29.07007 -27.96537 -27.31809 -26.79759 -24.86373 -22.86717 -22.25178 -22.16213 -20.65914 -20.13550 -20.11050 -19.77541 -17.69672 -17.10930 -16.81929 -15.89644 -15.73874 -15.41930 -15.08570 -14.69600 -14.45950 -14.26507 -14.15812 -13.95024 -13.62265 -13.44708 -13.34154 -12.96570 -12.50975 -12.38682 -12.35881 -12.21028 -11.78295 -11.75732 -11.68179 -11.38762 -11.32046 -11.08700 -11.05712 -10.84567 -10.76210 -10.69760 -10.64762 -10.55134 -10.47833 -10.26200 -10.00191 -9.77326 -9.54397 -8.95981 -8.84915 -8.68919 -7.15829 -5.92417 -3.32033 2.00110 2.64467 2.92298 2.93612 3.28571 3.33572 3.35946 3.38764 4.28922 4.53227 4.62130 4.71433 4.73973 4.75852 4.95530 4.98270 5.08475 5.11244 5.20288 5.30559 5.42964 5.44417 5.45461 5.52012 5.60642 5.62342 5.66016 5.73095 5.73766 5.76934 5.81138 5.84386 5.84710 6.04482 6.06599 6.07617 6.12953 6.15350 6.19143 6.32192 6.39714 6.54342 6.58862 7.06049 7.28478 7.31999 7.60765 7.72488 7.96546 8.48803 8.86476 8.94784 9.54527 10.14174 11.17087 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003389 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.620524 B = 8260.190184 C = 9929.750687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.140 4.140 7 C 0.515 3.485 8 O -0.536 6.536 9 N -0.719 5.719 10 C 0.111 3.889 11 H 0.109 0.891 12 C 0.168 3.832 13 N -0.602 5.602 14 C -0.246 4.246 15 H 0.082 0.918 16 C 0.003 3.997 17 N -0.912 5.912 18 Si 0.915 3.085 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.128 3.872 23 C 0.114 3.886 24 H 0.120 0.880 25 N -0.276 5.276 26 C -0.005 4.005 27 C -0.077 4.077 28 N -0.278 5.278 29 N -0.110 5.110 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.396 0.604 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.257 0.743 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.205 0.795 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.897 9.060 -4.077 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.142 4.142 6 C -0.180 4.180 7 C 0.302 3.698 8 O -0.412 6.412 9 N -0.371 5.371 10 C 0.004 3.996 11 H 0.127 0.873 12 C 0.043 3.957 13 N -0.329 5.329 14 C -0.373 4.373 15 H 0.100 0.900 16 C -0.195 4.195 17 N -0.557 5.557 18 Si 0.744 3.256 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.210 1.210 22 C 0.000 4.000 23 C 0.010 3.990 24 H 0.137 0.863 25 N -0.070 5.070 26 C -0.156 4.156 27 C -0.233 4.233 28 N -0.145 5.145 29 N -0.089 5.089 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.231 0.769 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.222 0.778 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.607 9.153 -5.290 14.284 hybrid contribution -1.755 -0.566 1.269 2.238 sum 7.852 8.586 -4.021 12.310 Atomic orbital electron populations 1.21913 0.95186 1.02351 1.01423 1.21108 0.96086 0.95874 0.98499 1.21846 1.00773 0.96227 1.01596 1.21679 1.00649 0.95096 0.97882 1.21390 1.02330 0.93815 0.96646 1.21680 1.02749 0.92296 1.01288 1.20644 0.78971 0.88214 0.82005 1.90705 1.39231 1.77885 1.33367 1.45899 1.57868 1.09438 1.23916 1.22826 0.96966 0.80203 0.99588 0.87325 1.21649 0.89050 0.89441 0.95577 1.44488 1.06186 1.23483 1.58786 1.18946 0.88271 1.05413 1.24719 0.90000 1.24851 0.97812 0.97056 0.99823 1.69940 1.24682 1.16566 1.44523 0.86174 0.81806 0.78143 0.79444 1.20925 1.21505 1.21005 1.21936 0.85737 0.91783 1.00536 1.23339 1.00036 0.93874 0.81787 0.86253 1.47267 1.09872 1.35284 1.14540 1.24256 1.01069 1.02785 0.87533 1.23550 0.92107 1.04985 1.02693 1.75004 1.19896 1.18087 1.01484 1.78227 1.06122 1.11559 1.13012 0.93048 0.91964 0.92770 0.91252 0.92852 0.92901 0.92769 0.91902 0.92045 0.91332 0.90746 0.89110 0.89249 0.76910 0.92268 0.92380 0.93268 0.92336 0.92888 0.77825 0.79883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.95 37.16 0.33 -1.10 16 2 C -0.10 -0.88 2.92 -90.62 -0.26 -1.14 16 3 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 4 C -0.12 -1.10 4.68 -26.73 -0.13 -1.22 16 5 C -0.10 -1.23 4.26 -26.73 -0.11 -1.35 16 6 C -0.14 -1.74 5.70 -27.88 -0.16 -1.89 16 7 C 0.52 8.52 7.83 -10.98 -0.09 8.43 16 8 O -0.54 -10.74 15.71 5.56 0.09 -10.65 16 9 N -0.72 -11.74 5.08 -52.03 -0.26 -12.00 16 10 C 0.11 1.94 3.10 -66.10 -0.20 1.73 16 11 H 0.11 1.91 7.70 -51.93 -0.40 1.51 16 12 C 0.17 3.69 4.54 -3.06 -0.01 3.67 16 13 N -0.60 -13.04 2.14 -170.07 -0.36 -13.40 16 14 C -0.25 -5.99 10.09 -15.06 -0.15 -6.15 16 15 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 16 C 0.00 0.07 5.49 -17.43 -0.10 -0.03 16 17 N -0.91 -24.75 10.31 55.49 0.57 -24.18 16 18 Si 0.91 20.48 29.55 -169.99 -5.02 15.45 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.13 2.19 6.30 -2.53 -0.02 2.17 16 23 C 0.11 1.76 4.06 -65.78 -0.27 1.49 16 24 H 0.12 1.56 8.14 -51.93 -0.42 1.13 16 25 N -0.28 -4.50 2.27 -52.69 -0.12 -4.62 16 26 C 0.00 -0.08 10.01 -17.05 -0.17 -0.25 16 27 C -0.08 -1.20 12.05 -17.74 -0.21 -1.41 16 28 N -0.28 -4.77 12.41 30.23 0.38 -4.40 16 29 N -0.11 -1.87 12.57 60.35 0.76 -1.11 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.07 1.00 6.52 -51.93 -0.34 0.66 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.40 6.27 7.01 -40.82 -0.29 5.98 16 44 H 0.06 1.55 7.51 -51.93 -0.39 1.16 16 45 H 0.06 1.43 7.27 -51.93 -0.38 1.05 16 46 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.06 0.98 8.02 -51.93 -0.42 0.57 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.20 3.86 6.78 -52.49 -0.36 3.50 16 50 H 0.18 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -28.82 397.91 -7.56 -36.37 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.37 Total: 10.38 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.21 Total: 2.15 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.96 Total: -59.71 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.82 -7.56 -36.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129279848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.626 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds