Wall clock time and date at job start Tue Mar 31 2020 20:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47208 * 120.00353 * 2 1 3 5 5 C 1.53003 * 109.47427 * 64.99673 * 4 2 1 6 6 C 1.52998 * 109.46917 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46653 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00424 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00038 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00419 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.77895 * 36.78888 * 10 9 7 12 12 C 1.54330 * 110.72220 * 273.55342 * 10 9 7 13 13 N 1.47026 * 107.26840 * 219.44076 * 12 10 9 14 14 C 1.36935 * 125.64362 * 178.90400 * 13 12 10 15 15 H 1.08001 * 119.99939 * 180.02562 * 14 13 12 16 16 C 1.38813 * 120.00563 * 0.02562 * 14 13 12 17 17 N 1.31620 * 119.99425 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00494 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47178 * 59.99909 * 18 16 14 20 20 H 1.48495 * 109.47293 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46818 * 300.00219 * 18 16 14 22 22 C 1.47420 * 108.70428 * 358.94103 * 13 12 10 23 23 C 1.54907 * 104.83524 * 24.12518 * 22 13 12 24 24 H 1.09000 * 111.00618 * 204.91301 * 23 22 13 25 25 N 1.46499 * 111.00010 * 81.06591 * 23 22 13 26 26 C 1.35311 * 125.87301 * 326.45278 * 25 23 22 27 27 C 1.35345 * 106.17897 * 180.02562 * 26 25 23 28 28 N 1.33771 * 106.49623 * 0.02562 * 27 26 25 29 29 N 1.28633 * 108.88531 * 359.73735 * 28 27 26 30 30 H 1.09000 * 109.47012 * 60.00159 * 1 2 3 31 31 H 1.09000 * 109.47193 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46739 * 299.99712 * 1 2 3 33 33 H 1.09002 * 109.47182 * 239.99726 * 2 1 3 34 34 H 1.09001 * 109.46905 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47078 * 299.99800 * 3 2 1 36 36 H 1.08996 * 109.47110 * 60.00514 * 3 2 1 37 37 H 1.09001 * 109.46935 * 305.00061 * 4 2 1 38 38 H 1.08996 * 109.47205 * 184.99887 * 4 2 1 39 39 H 1.09001 * 109.46746 * 60.00273 * 5 4 2 40 40 H 1.08996 * 109.47103 * 300.00276 * 5 4 2 41 41 H 1.09001 * 109.47258 * 60.00502 * 6 5 4 42 42 H 1.08996 * 109.47391 * 300.00016 * 6 5 4 43 43 H 0.97005 * 119.99651 * 0.02562 * 9 7 6 44 44 H 1.08998 * 109.88224 * 100.02395 * 12 10 9 45 45 H 1.08998 * 109.88221 * 338.85788 * 12 10 9 46 46 H 0.97001 * 119.99700 * 179.97438 * 17 16 14 47 47 H 1.08997 * 110.36858 * 142.96748 * 22 13 12 48 48 H 1.08999 * 110.36307 * 265.28963 * 22 13 12 49 49 H 1.07997 * 126.90905 * 0.02562 * 26 25 23 50 50 H 1.08005 * 126.75596 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1879 6 6 2.1448 -2.9166 2.4375 7 6 1.7455 -4.3685 2.3774 8 8 1.1159 -4.7856 1.4284 9 7 2.0890 -5.2039 3.3778 10 6 1.7004 -6.6151 3.3197 11 1 1.7539 -6.9892 2.2973 12 6 0.2851 -6.8162 3.9013 13 7 0.3046 -8.0664 4.6747 14 6 -0.7522 -8.5918 5.3691 15 1 -0.6359 -9.5201 5.9086 16 6 -1.9731 -7.9314 5.3795 17 7 -2.1150 -6.8003 4.7215 18 14 -3.4146 -8.6477 6.3272 19 1 -3.0555 -8.7605 7.7638 20 1 -4.5948 -7.7586 6.1798 21 1 -3.7395 -9.9939 5.7910 22 6 1.6506 -8.6601 4.5797 23 6 2.5884 -7.4684 4.2635 24 1 3.4902 -7.8057 3.7525 25 7 2.9239 -6.7267 5.4815 26 6 2.1110 -6.5438 6.5477 27 6 2.8163 -5.8073 7.4376 28 7 4.0102 -5.5782 6.8796 29 7 4.0441 -6.1406 5.7232 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2619 2.1369 38 1 3.1263 -0.6444 1.2951 39 1 2.0699 -2.6550 0.3002 40 1 0.5490 -2.2725 1.1420 41 1 1.7098 -2.4570 3.3250 42 1 3.2310 -2.8397 2.4838 43 1 2.5929 -4.8704 4.1366 44 1 -0.4409 -6.8924 3.0918 45 1 0.0301 -5.9808 4.5533 46 1 -2.9682 -6.3389 4.7285 47 1 1.9296 -9.1214 5.5271 48 1 1.6854 -9.3942 3.7747 49 1 1.1023 -6.9115 6.6649 50 1 2.4811 -5.4707 8.4076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129279848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:42 Heat of formation + Delta-G solvation = 57.898402 kcal Electronic energy + Delta-G solvation = -30039.065656 eV Core-core repulsion = 26103.248431 eV Total energy + Delta-G solvation = -3935.817225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.25743 -41.07573 -39.43263 -37.84963 -35.79421 -34.81273 -33.80638 -33.39651 -31.84409 -30.62569 -29.37240 -28.07571 -27.92932 -26.53646 -24.17754 -23.55401 -23.37733 -22.12433 -21.49538 -21.22331 -20.83004 -19.25107 -18.54419 -18.27654 -17.21930 -16.94632 -16.81995 -16.39279 -16.01506 -15.76124 -15.67753 -15.38384 -15.01587 -14.94665 -14.75813 -14.45912 -14.19046 -13.91911 -13.87636 -13.41744 -13.13397 -13.07670 -12.97917 -12.81056 -12.71431 -12.62801 -12.51302 -12.49124 -12.28082 -12.10632 -11.90687 -11.88379 -11.82380 -11.56835 -11.45188 -11.32876 -11.13795 -10.90043 -10.74180 -10.25833 -10.16842 -9.00890 -7.86970 -5.26292 0.65753 1.33319 1.49190 1.50390 1.56693 1.59004 1.65218 2.06427 2.47456 3.17605 3.33112 3.38379 3.52685 3.69050 3.76016 3.80370 3.93129 3.96417 4.10054 4.19429 4.23322 4.26027 4.36606 4.43905 4.46776 4.61024 4.65517 4.68222 4.74349 4.79869 4.82798 4.84927 4.88372 4.96955 5.03740 5.10223 5.12316 5.22152 5.29902 5.30520 5.39925 5.42836 5.50286 5.53472 5.55989 5.68920 5.73834 6.08914 6.37748 7.00969 7.16180 7.54927 7.68438 8.28063 9.21011 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003389 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.620524 B = 8260.190184 C = 9929.750687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.109 4.109 5 C -0.099 4.099 6 C -0.132 4.132 7 C 0.508 3.492 8 O -0.576 6.576 9 N -0.713 5.713 10 C 0.121 3.879 11 H 0.110 0.890 12 C 0.190 3.810 13 N -0.615 5.615 14 C -0.239 4.239 15 H 0.093 0.907 16 C -0.055 4.055 17 N -0.945 5.945 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.303 1.303 21 H -0.281 1.281 22 C 0.127 3.873 23 C 0.128 3.872 24 H 0.158 0.842 25 N -0.273 5.273 26 C -0.019 4.019 27 C -0.063 4.063 28 N -0.291 5.291 29 N -0.109 5.109 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.401 0.599 44 H 0.005 0.995 45 H 0.024 0.976 46 H 0.245 0.755 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.184 0.816 50 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.295 9.247 -3.223 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.137 4.137 6 C -0.172 4.172 7 C 0.297 3.703 8 O -0.456 6.456 9 N -0.365 5.365 10 C 0.013 3.987 11 H 0.128 0.872 12 C 0.063 3.937 13 N -0.342 5.342 14 C -0.367 4.367 15 H 0.111 0.889 16 C -0.249 4.249 17 N -0.593 5.593 18 Si 0.802 3.198 19 H -0.198 1.198 20 H -0.230 1.230 21 H -0.207 1.207 22 C 0.000 4.000 23 C 0.024 3.976 24 H 0.175 0.825 25 N -0.067 5.067 26 C -0.171 4.171 27 C -0.220 4.220 28 N -0.157 5.157 29 N -0.088 5.088 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.120 0.880 42 H 0.136 0.864 43 H 0.237 0.763 44 H 0.023 0.977 45 H 0.042 0.958 46 H 0.054 0.946 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.201 0.799 50 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 12.059 9.317 -4.409 15.864 hybrid contribution -2.479 -0.670 1.005 2.757 sum 9.581 8.648 -3.403 13.347 Atomic orbital electron populations 1.21916 0.95872 1.01264 1.01892 1.21120 0.95528 0.96861 0.98172 1.21811 1.01250 0.95039 1.01986 1.21637 1.01606 0.93072 0.98281 1.21335 1.00754 0.95560 0.96089 1.21737 1.04525 0.89038 1.01878 1.21471 0.77908 0.89765 0.81160 1.90689 1.41018 1.78866 1.34983 1.45869 1.57550 1.08997 1.24081 1.22517 0.94822 0.81548 0.99791 0.87235 1.21146 0.90703 0.88693 0.93123 1.44606 1.07674 1.23653 1.58281 1.19326 0.88778 1.05120 1.23486 0.88923 1.25561 1.00303 0.97644 1.01369 1.70175 1.24236 1.18146 1.46729 0.85242 0.78712 0.77035 0.78845 1.19753 1.23017 1.20685 1.22137 0.83470 0.92577 1.01793 1.23339 1.00764 0.92240 0.81225 0.82459 1.47298 1.09689 1.35238 1.14475 1.24055 1.00559 1.03980 0.88483 1.23977 0.91187 1.03512 1.03318 1.75017 1.20461 1.18535 1.01706 1.78207 1.05979 1.11468 1.13103 0.92279 0.93816 0.92624 0.91559 0.92047 0.92404 0.92538 0.91490 0.90459 0.92242 0.93128 0.88021 0.86374 0.76287 0.97658 0.95766 0.94617 0.91312 0.90656 0.79907 0.77106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.95 71.98 0.64 -2.23 16 2 C -0.10 -1.67 2.92 -10.79 -0.03 -1.70 16 3 C -0.14 -1.96 9.19 71.98 0.66 -1.30 16 4 C -0.11 -1.90 4.68 30.60 0.14 -1.75 16 5 C -0.10 -2.34 4.26 30.59 0.13 -2.21 16 6 C -0.13 -3.13 5.70 29.85 0.17 -2.96 16 7 C 0.51 16.88 7.83 87.66 0.69 17.57 16 8 O -0.58 -23.95 15.71 -3.03 -0.05 -24.00 16 9 N -0.71 -22.96 5.08 -436.92 -2.22 -25.18 16 10 C 0.12 4.19 3.10 46.18 0.14 4.34 16 11 H 0.11 3.85 7.70 -2.39 -0.02 3.83 16 12 C 0.19 8.63 4.54 86.73 0.39 9.02 16 13 N -0.61 -26.79 2.14 -691.99 -1.48 -28.27 16 14 C -0.24 -11.68 10.09 84.03 0.85 -10.83 16 15 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 16 C -0.05 -2.86 5.49 84.86 0.47 -2.39 16 17 N -0.95 -53.86 10.31 21.65 0.22 -53.64 16 18 Si 0.97 42.86 29.55 68.60 2.03 44.89 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 22 C 0.13 4.09 6.30 86.86 0.55 4.64 16 23 C 0.13 3.67 4.06 46.38 0.19 3.86 16 24 H 0.16 3.47 8.14 -2.39 -0.02 3.45 16 25 N -0.27 -8.34 2.27 -320.60 -0.73 -9.07 16 26 C -0.02 -0.62 10.01 83.49 0.84 0.21 16 27 C -0.06 -1.85 12.05 83.73 1.01 -0.84 16 28 N -0.29 -9.24 12.41 -58.26 -0.72 -9.96 16 29 N -0.11 -3.40 12.57 37.02 0.47 -2.93 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.97 6.56 -2.39 -0.02 0.96 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.05 1.43 6.52 -2.39 -0.02 1.41 16 41 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.40 12.15 7.01 -92.70 -0.65 11.51 16 44 H 0.01 0.29 7.51 -2.39 -0.02 0.27 16 45 H 0.02 1.26 7.27 -2.39 -0.02 1.24 16 46 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 47 H 0.07 2.13 8.02 -2.39 -0.02 2.11 16 48 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.18 6.92 6.78 -2.91 -0.02 6.90 16 50 H 0.21 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -65.32 397.91 4.63 -60.69 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.28 Total: 34.04 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.83 Total: 13.43 kcal Atomic # 7 Polarization: -124.59 SS G_CDS: -4.46 Total: -129.05 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -65.32 4.63 -60.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129279848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.585 kcal (2) G-P(sol) polarization free energy of solvation -65.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds