Wall clock time and date at job start Tue Mar 31 2020 20:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47214 * 2 1 4 4 C 1.53004 * 109.47449 * 174.86513 * 3 2 1 5 5 H 1.09006 * 109.46997 * 306.50602 * 4 3 2 6 6 C 1.52996 * 109.47280 * 186.50294 * 4 3 2 7 7 C 1.52999 * 109.47299 * 65.78500 * 6 4 3 8 8 C 1.50700 * 109.46805 * 66.50225 * 4 3 2 9 9 O 1.21282 * 120.00296 * 0.02562 * 8 4 3 10 10 N 1.34778 * 119.99536 * 180.02562 * 8 4 3 11 11 C 1.46504 * 119.99629 * 179.97438 * 10 8 4 12 12 H 1.09005 * 110.88747 * 34.30324 * 11 10 8 13 13 C 1.54904 * 111.00910 * 270.41971 * 11 10 8 14 14 N 1.47463 * 104.81439 * 204.94751 * 13 11 10 15 15 C 1.36941 * 125.63180 * 204.04593 * 14 13 11 16 16 H 1.07998 * 120.00044 * 180.02562 * 15 14 13 17 17 C 1.38806 * 119.99762 * 0.02837 * 15 14 13 18 18 N 1.31621 * 120.00170 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99815 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47165 * 90.00017 * 19 17 15 21 21 H 1.48503 * 109.47472 * 210.00055 * 19 17 15 22 22 H 1.48502 * 109.47352 * 330.00188 * 19 17 15 23 23 C 1.47021 * 108.71944 * 24.07352 * 14 13 11 24 24 C 1.54325 * 107.27258 * 358.97245 * 23 14 13 25 25 H 1.09003 * 110.71728 * 219.44686 * 24 23 14 26 26 N 1.46498 * 110.72076 * 96.17330 * 24 23 14 27 27 C 1.35316 * 125.86868 * 331.19407 * 26 24 23 28 28 C 1.35347 * 106.17548 * 179.91014 * 27 26 24 29 29 N 1.33769 * 106.49652 * 0.34585 * 28 27 26 30 30 N 1.28635 * 108.88437 * 359.77910 * 29 28 27 31 31 H 1.09003 * 109.46482 * 299.99817 * 1 2 3 32 32 H 1.09000 * 109.47239 * 59.99296 * 1 2 3 33 33 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46963 * 240.00407 * 2 1 3 35 35 H 1.09000 * 109.47239 * 120.00704 * 2 1 3 36 36 H 1.09005 * 109.46986 * 54.86831 * 3 2 1 37 37 H 1.09000 * 109.47886 * 294.86703 * 3 2 1 38 38 H 1.09000 * 109.47094 * 305.78157 * 6 4 3 39 39 H 1.09008 * 109.46937 * 185.77707 * 6 4 3 40 40 H 1.09003 * 109.47541 * 54.83423 * 7 6 4 41 41 H 1.08996 * 109.47595 * 174.84236 * 7 6 4 42 42 H 1.09003 * 109.46876 * 294.84198 * 7 6 4 43 43 H 0.96999 * 120.00295 * 0.02562 * 10 8 4 44 44 H 1.09001 * 110.36722 * 323.75717 * 13 11 10 45 45 H 1.09008 * 110.36906 * 86.07309 * 13 11 10 46 46 H 0.97000 * 119.99911 * 180.02562 * 18 17 15 47 47 H 1.08998 * 109.88343 * 239.55448 * 23 14 13 48 48 H 1.09003 * 110.01487 * 118.46038 * 23 14 13 49 49 H 1.07999 * 126.91063 * 0.02562 * 27 26 24 50 50 H 1.08003 * 126.75418 * 180.12849 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5646 1.4444 0.1291 5 1 3.8562 0.8584 1.0008 6 6 4.0608 2.8825 0.2921 7 6 3.5582 3.4478 1.6220 8 6 4.1743 0.8400 -1.1094 9 8 3.4599 0.4467 -2.0071 10 7 5.5136 0.7363 -1.2194 11 6 6.1064 0.1482 -2.4231 12 1 5.5150 0.3911 -3.3060 13 6 6.2706 -1.3844 -2.2693 14 7 7.3675 -1.7402 -3.1885 15 6 7.5718 -2.9737 -3.7470 16 1 8.4086 -3.1340 -4.4108 17 6 6.7035 -4.0180 -3.4601 18 7 5.6835 -3.8224 -2.6516 19 14 6.9819 -5.7004 -4.2226 20 1 7.8530 -6.5092 -3.3326 21 1 5.6769 -6.3876 -4.3956 22 1 7.6371 -5.5420 -5.5458 23 6 8.2055 -0.5519 -3.4054 24 6 7.5791 0.6042 -2.5976 25 1 7.6299 1.5379 -3.1577 26 7 8.2365 0.7427 -1.2957 27 6 8.8242 -0.2541 -0.5943 28 6 9.3013 0.3125 0.5385 29 7 8.9796 1.6096 0.4791 30 7 8.3493 1.8323 -0.6199 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.6036 1.9821 0.8405 37 1 1.7538 1.9292 -0.9323 38 1 3.6825 3.4925 -0.5282 39 1 5.1507 2.8942 0.2811 40 1 3.8595 2.7869 2.4349 41 1 3.9860 4.4376 1.7810 42 1 2.4710 3.5214 1.5978 43 1 6.0850 1.0505 -0.5012 44 1 6.5391 -1.6361 -1.2433 45 1 5.3520 -1.8953 -2.5581 46 1 5.0769 -4.5523 -2.4509 47 1 8.2212 -0.2977 -4.4652 48 1 9.2200 -0.7418 -3.0549 49 1 8.8993 -1.2924 -0.8816 50 1 9.8337 -0.1853 1.3355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129353532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:08 Heat of formation + Delta-G solvation = 79.412452 kcal Electronic energy + Delta-G solvation = -30981.372743 eV Core-core repulsion = 27046.488437 eV Total energy + Delta-G solvation = -3934.884306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -43.08840 -39.95459 -38.10875 -35.87996 -34.30063 -33.68522 -32.95181 -31.76375 -30.70082 -29.24413 -28.56793 -27.58360 -25.32914 -24.66322 -22.75606 -22.39858 -21.88265 -21.35105 -20.34962 -20.16865 -19.66224 -17.78345 -17.32361 -16.96549 -15.93641 -15.46481 -15.10131 -14.91332 -14.69314 -14.62540 -14.32754 -14.07761 -13.88397 -13.56275 -13.35532 -13.06851 -12.99577 -12.65523 -12.44079 -12.40761 -12.01996 -11.99591 -11.80288 -11.50383 -11.41915 -11.32792 -11.16581 -11.04704 -10.82662 -10.74195 -10.69511 -10.53602 -10.43785 -10.38743 -10.21208 -9.98532 -9.84716 -9.32656 -9.10974 -8.85889 -8.63828 -7.14408 -5.84878 -3.31842 1.85895 2.53210 2.79861 2.94071 3.29658 3.34760 3.37967 3.39664 4.28925 4.52865 4.66281 4.68711 4.77114 4.85325 4.88539 5.05480 5.17275 5.27205 5.29559 5.31139 5.37134 5.40342 5.47207 5.48338 5.53916 5.64928 5.69984 5.76594 5.79456 5.84797 5.89167 5.98918 6.01454 6.05787 6.08102 6.10446 6.17050 6.18708 6.25694 6.39058 6.45066 6.57222 6.71058 6.90514 7.15263 7.38525 7.63190 7.76143 8.10933 8.53503 8.73566 8.96647 9.57397 10.14930 11.17900 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.004798 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.954083 B = 5834.100423 C = 8244.217893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.096 4.096 4 C -0.108 4.108 5 H 0.093 0.907 6 C -0.116 4.116 7 C -0.150 4.150 8 C 0.520 3.480 9 O -0.528 6.528 10 N -0.718 5.718 11 C 0.111 3.889 12 H 0.114 0.886 13 C 0.146 3.854 14 N -0.598 5.598 15 C -0.238 4.238 16 H 0.082 0.918 17 C -0.001 4.001 18 N -0.913 5.913 19 Si 0.918 3.082 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.130 3.870 24 C 0.116 3.884 25 H 0.119 0.881 26 N -0.275 5.275 27 C -0.017 4.017 28 C -0.068 4.068 29 N -0.277 5.277 30 N -0.103 5.103 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.395 0.605 44 H 0.020 0.980 45 H 0.122 0.878 46 H 0.256 0.744 47 H 0.055 0.945 48 H 0.041 0.959 49 H 0.194 0.806 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 10.803 6.695 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.134 4.134 4 C -0.129 4.129 5 H 0.111 0.889 6 C -0.154 4.154 7 C -0.207 4.207 8 C 0.306 3.694 9 O -0.403 6.403 10 N -0.370 5.370 11 C 0.004 3.996 12 H 0.131 0.869 13 C 0.020 3.980 14 N -0.326 5.326 15 C -0.365 4.365 16 H 0.100 0.900 17 C -0.198 4.198 18 N -0.560 5.560 19 Si 0.748 3.252 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.002 3.998 24 C 0.013 3.987 25 H 0.137 0.863 26 N -0.069 5.069 27 C -0.168 4.168 28 C -0.225 4.225 29 N -0.143 5.143 30 N -0.082 5.082 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.230 0.770 44 H 0.038 0.962 45 H 0.140 0.860 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.211 0.789 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.882 11.821 6.053 13.590 hybrid contribution 0.827 -2.026 -0.077 2.189 sum -2.054 9.796 5.975 11.657 Atomic orbital electron populations 1.21720 0.96278 1.01327 1.01090 1.21670 0.95501 0.96712 1.03221 1.21450 0.91969 0.97803 1.02170 1.21468 0.97460 0.97336 0.96684 0.88859 1.21509 1.01079 0.94085 0.98726 1.21800 1.01290 1.00856 0.96781 1.20547 0.81838 0.78317 0.88731 1.90689 1.60344 1.48172 1.41120 1.45861 1.07148 1.63206 1.20828 1.23022 0.89395 0.97911 0.89308 0.86854 1.22405 0.96033 0.86774 0.92808 1.44408 1.27804 1.06067 1.54276 1.19008 1.09949 0.84477 1.23068 0.89987 1.24830 0.97226 0.98501 0.99215 1.69756 1.16475 1.31230 1.38518 0.86039 0.77108 0.83386 0.78693 1.21436 1.21492 1.20520 1.21647 0.94951 0.86058 0.97119 1.23219 0.93814 1.02220 0.79447 0.86273 1.47446 1.36372 1.06239 1.16826 1.23888 1.00977 0.97871 0.94112 1.23535 1.07305 0.91578 1.00110 1.75037 1.12019 1.15835 1.11408 1.78233 1.18848 1.09702 1.01462 0.93433 0.92895 0.92980 0.89689 0.92779 0.91539 0.91264 0.91381 0.91404 0.92549 0.92480 0.92362 0.76984 0.96209 0.86047 0.93292 0.92756 0.94130 0.78942 0.79709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.13 -1.82 5.63 -26.73 -0.15 -1.97 16 3 C -0.10 -1.18 4.23 -26.73 -0.11 -1.30 16 4 C -0.11 -1.39 2.17 -91.77 -0.20 -1.59 16 5 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 6 C -0.12 -1.29 5.34 -26.73 -0.14 -1.43 16 7 C -0.15 -1.37 9.57 37.16 0.36 -1.01 16 8 C 0.52 8.64 6.90 -10.98 -0.08 8.56 16 9 O -0.53 -10.54 13.75 5.56 0.08 -10.46 16 10 N -0.72 -11.75 5.03 -51.73 -0.26 -12.01 16 11 C 0.11 1.98 3.23 -65.78 -0.21 1.77 16 12 H 0.11 2.14 7.63 -51.93 -0.40 1.75 16 13 C 0.15 3.21 5.17 -2.51 -0.01 3.20 16 14 N -0.60 -13.30 3.40 -170.04 -0.58 -13.88 16 15 C -0.24 -5.94 10.27 -15.06 -0.15 -6.10 16 16 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 17 C 0.00 -0.02 5.49 -17.43 -0.10 -0.11 16 18 N -0.91 -25.11 10.09 55.49 0.56 -24.55 16 19 Si 0.92 20.79 29.55 -169.99 -5.02 15.76 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.13 2.26 6.27 -3.06 -0.02 2.24 16 24 C 0.12 1.81 3.97 -66.10 -0.26 1.55 16 25 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 26 N -0.28 -4.30 2.40 -52.98 -0.13 -4.42 16 27 C -0.02 -0.26 9.34 -17.05 -0.16 -0.42 16 28 C -0.07 -0.97 12.05 -17.74 -0.21 -1.19 16 29 N -0.28 -4.47 12.41 30.23 0.38 -4.09 16 30 N -0.10 -1.67 12.22 60.35 0.74 -0.93 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.45 6.19 -51.93 -0.32 1.13 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 37 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.81 7.41 -51.92 -0.38 0.42 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.49 6.70 -51.93 -0.35 0.14 16 43 H 0.39 6.21 6.09 -40.82 -0.25 5.96 16 44 H 0.02 0.47 7.58 -51.93 -0.39 0.08 16 45 H 0.12 3.24 5.88 -51.92 -0.31 2.94 16 46 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.04 0.70 7.18 -51.93 -0.37 0.33 16 49 H 0.19 3.12 7.71 -52.49 -0.40 2.72 16 50 H 0.19 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -28.82 392.05 -7.54 -36.35 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -8.12 Total: 11.47 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.09 Total: 0.86 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.71 Total: -59.89 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.82 -7.54 -36.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129353532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.766 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.67 seconds