Wall clock time and date at job start Tue Mar 31 2020 20:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47214 * 2 1 4 4 C 1.53004 * 109.47449 * 174.86513 * 3 2 1 5 5 H 1.09006 * 109.46997 * 306.50602 * 4 3 2 6 6 C 1.52996 * 109.47280 * 186.50294 * 4 3 2 7 7 C 1.52999 * 109.47299 * 65.78500 * 6 4 3 8 8 C 1.50700 * 109.46805 * 66.50225 * 4 3 2 9 9 O 1.21282 * 120.00296 * 0.02562 * 8 4 3 10 10 N 1.34778 * 119.99536 * 180.02562 * 8 4 3 11 11 C 1.46504 * 119.99629 * 179.97438 * 10 8 4 12 12 H 1.09005 * 110.88747 * 34.30324 * 11 10 8 13 13 C 1.54904 * 111.00910 * 270.41971 * 11 10 8 14 14 N 1.47463 * 104.81439 * 204.94751 * 13 11 10 15 15 C 1.36941 * 125.63180 * 204.04593 * 14 13 11 16 16 H 1.07998 * 120.00044 * 180.02562 * 15 14 13 17 17 C 1.38806 * 119.99762 * 0.02837 * 15 14 13 18 18 N 1.31621 * 120.00170 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99815 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47165 * 90.00017 * 19 17 15 21 21 H 1.48503 * 109.47472 * 210.00055 * 19 17 15 22 22 H 1.48502 * 109.47352 * 330.00188 * 19 17 15 23 23 C 1.47021 * 108.71944 * 24.07352 * 14 13 11 24 24 C 1.54325 * 107.27258 * 358.97245 * 23 14 13 25 25 H 1.09003 * 110.71728 * 219.44686 * 24 23 14 26 26 N 1.46498 * 110.72076 * 96.17330 * 24 23 14 27 27 C 1.35316 * 125.86868 * 331.19407 * 26 24 23 28 28 C 1.35347 * 106.17548 * 179.91014 * 27 26 24 29 29 N 1.33769 * 106.49652 * 0.34585 * 28 27 26 30 30 N 1.28635 * 108.88437 * 359.77910 * 29 28 27 31 31 H 1.09003 * 109.46482 * 299.99817 * 1 2 3 32 32 H 1.09000 * 109.47239 * 59.99296 * 1 2 3 33 33 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46963 * 240.00407 * 2 1 3 35 35 H 1.09000 * 109.47239 * 120.00704 * 2 1 3 36 36 H 1.09005 * 109.46986 * 54.86831 * 3 2 1 37 37 H 1.09000 * 109.47886 * 294.86703 * 3 2 1 38 38 H 1.09000 * 109.47094 * 305.78157 * 6 4 3 39 39 H 1.09008 * 109.46937 * 185.77707 * 6 4 3 40 40 H 1.09003 * 109.47541 * 54.83423 * 7 6 4 41 41 H 1.08996 * 109.47595 * 174.84236 * 7 6 4 42 42 H 1.09003 * 109.46876 * 294.84198 * 7 6 4 43 43 H 0.96999 * 120.00295 * 0.02562 * 10 8 4 44 44 H 1.09001 * 110.36722 * 323.75717 * 13 11 10 45 45 H 1.09008 * 110.36906 * 86.07309 * 13 11 10 46 46 H 0.97000 * 119.99911 * 180.02562 * 18 17 15 47 47 H 1.08998 * 109.88343 * 239.55448 * 23 14 13 48 48 H 1.09003 * 110.01487 * 118.46038 * 23 14 13 49 49 H 1.07999 * 126.91063 * 0.02562 * 27 26 24 50 50 H 1.08003 * 126.75418 * 180.12849 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5646 1.4444 0.1291 5 1 3.8562 0.8584 1.0008 6 6 4.0608 2.8825 0.2921 7 6 3.5582 3.4478 1.6220 8 6 4.1743 0.8400 -1.1094 9 8 3.4599 0.4467 -2.0071 10 7 5.5136 0.7363 -1.2194 11 6 6.1064 0.1482 -2.4231 12 1 5.5150 0.3911 -3.3060 13 6 6.2706 -1.3844 -2.2693 14 7 7.3675 -1.7402 -3.1885 15 6 7.5718 -2.9737 -3.7470 16 1 8.4086 -3.1340 -4.4108 17 6 6.7035 -4.0180 -3.4601 18 7 5.6835 -3.8224 -2.6516 19 14 6.9819 -5.7004 -4.2226 20 1 7.8530 -6.5092 -3.3326 21 1 5.6769 -6.3876 -4.3956 22 1 7.6371 -5.5420 -5.5458 23 6 8.2055 -0.5519 -3.4054 24 6 7.5791 0.6042 -2.5976 25 1 7.6299 1.5379 -3.1577 26 7 8.2365 0.7427 -1.2957 27 6 8.8242 -0.2541 -0.5943 28 6 9.3013 0.3125 0.5385 29 7 8.9796 1.6096 0.4791 30 7 8.3493 1.8323 -0.6199 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.6036 1.9821 0.8405 37 1 1.7538 1.9292 -0.9323 38 1 3.6825 3.4925 -0.5282 39 1 5.1507 2.8942 0.2811 40 1 3.8595 2.7869 2.4349 41 1 3.9860 4.4376 1.7810 42 1 2.4710 3.5214 1.5978 43 1 6.0850 1.0505 -0.5012 44 1 6.5391 -1.6361 -1.2433 45 1 5.3520 -1.8953 -2.5581 46 1 5.0769 -4.5523 -2.4509 47 1 8.2212 -0.2977 -4.4652 48 1 9.2200 -0.7418 -3.0549 49 1 8.8993 -1.2924 -0.8816 50 1 9.8337 -0.1853 1.3355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129353532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:02 Heat of formation + Delta-G solvation = 62.213505 kcal Electronic energy + Delta-G solvation = -30982.118546 eV Core-core repulsion = 27046.488437 eV Total energy + Delta-G solvation = -3935.630108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.47 seconds Orbital eigenvalues (eV) -44.33135 -41.30078 -39.57369 -37.02443 -35.88397 -35.02277 -34.02760 -33.44721 -31.93380 -30.66419 -29.76778 -29.05809 -26.88313 -25.89358 -24.09076 -23.66821 -23.07777 -22.40871 -21.88262 -21.52251 -20.93052 -19.30395 -18.64515 -18.51664 -17.33006 -16.90580 -16.56577 -16.14540 -15.95515 -15.85410 -15.67634 -15.46839 -15.10430 -14.84399 -14.66037 -14.43667 -14.20347 -14.02707 -13.92007 -13.46341 -13.25451 -13.18127 -12.92721 -12.87394 -12.82789 -12.75739 -12.38821 -12.31692 -12.27629 -12.10613 -12.09532 -11.92966 -11.82431 -11.67348 -11.56031 -11.34263 -11.16968 -10.79072 -10.65653 -10.31803 -10.12518 -9.01172 -7.81538 -5.29125 0.59777 1.25809 1.48097 1.49238 1.57607 1.60219 1.61243 2.04703 2.46289 3.16093 3.31868 3.35847 3.49171 3.60812 3.69964 3.74233 3.86086 3.90624 4.16900 4.18734 4.24185 4.30164 4.33240 4.35421 4.37497 4.49154 4.56198 4.68106 4.69971 4.76694 4.77721 4.82580 4.90412 4.93457 5.07806 5.12052 5.16627 5.19056 5.26369 5.29289 5.40159 5.41831 5.45231 5.46984 5.54172 5.63078 5.71174 6.19308 6.40698 7.00106 7.19519 7.50140 7.67774 8.26199 9.19037 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.004798 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.954083 B = 5834.100423 C = 8244.217893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C -0.090 4.090 4 C -0.102 4.102 5 H 0.101 0.899 6 C -0.109 4.109 7 C -0.146 4.146 8 C 0.512 3.488 9 O -0.566 6.566 10 N -0.711 5.711 11 C 0.122 3.878 12 H 0.103 0.897 13 C 0.162 3.838 14 N -0.614 5.614 15 C -0.236 4.236 16 H 0.093 0.907 17 C -0.059 4.059 18 N -0.945 5.945 19 Si 0.977 3.023 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.266 1.266 23 C 0.129 3.871 24 C 0.132 3.868 25 H 0.152 0.848 26 N -0.276 5.276 27 C -0.029 4.029 28 C -0.054 4.054 29 N -0.290 5.290 30 N -0.107 5.107 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.401 0.599 44 H -0.003 1.003 45 H 0.072 0.928 46 H 0.245 0.755 47 H 0.074 0.926 48 H 0.052 0.948 49 H 0.183 0.817 50 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 12.664 7.682 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.128 4.128 4 C -0.123 4.123 5 H 0.119 0.881 6 C -0.147 4.147 7 C -0.204 4.204 8 C 0.300 3.700 9 O -0.444 6.444 10 N -0.364 5.364 11 C 0.013 3.987 12 H 0.121 0.879 13 C 0.035 3.965 14 N -0.341 5.341 15 C -0.364 4.364 16 H 0.111 0.889 17 C -0.252 4.252 18 N -0.594 5.594 19 Si 0.806 3.194 20 H -0.213 1.213 21 H -0.229 1.229 22 H -0.191 1.191 23 C 0.003 3.997 24 C 0.029 3.971 25 H 0.169 0.831 26 N -0.069 5.069 27 C -0.181 4.181 28 C -0.211 4.211 29 N -0.156 5.156 30 N -0.086 5.086 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.237 0.763 44 H 0.015 0.985 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.200 0.800 50 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.809 13.724 7.044 15.532 hybrid contribution 0.557 -2.600 -0.375 2.685 sum -1.252 11.124 6.669 13.031 Atomic orbital electron populations 1.21692 0.94569 1.01599 1.02168 1.21632 0.97104 0.97325 1.01182 1.21441 0.91502 0.96960 1.02864 1.21525 0.97704 0.98481 0.94567 0.88129 1.21474 1.00567 0.92525 1.00176 1.21787 1.02015 1.01269 0.95280 1.21361 0.81574 0.77526 0.89506 1.90680 1.61092 1.49745 1.42889 1.45816 1.07339 1.62726 1.20480 1.22614 0.91209 0.95207 0.89624 0.87934 1.21914 0.93915 0.89293 0.91353 1.44540 1.28760 1.06844 1.53987 1.19407 1.09418 0.85512 1.22110 0.88924 1.25584 0.97486 1.01777 1.00328 1.70049 1.17542 1.31311 1.40475 0.85102 0.76216 0.79661 0.78462 1.21252 1.22902 1.19088 1.21801 0.94619 0.84779 0.98504 1.23093 0.91458 1.02862 0.79702 0.83066 1.47418 1.36434 1.06320 1.16768 1.23897 1.01817 0.97545 0.94831 1.24032 1.06114 0.90833 1.00141 1.75045 1.12431 1.16675 1.11427 1.78228 1.19055 1.09656 1.01668 0.90975 0.93098 0.93207 0.94018 0.92511 0.88363 0.92415 0.91413 0.92150 0.92204 0.91461 0.91250 0.76311 0.98480 0.90983 0.94542 0.90840 0.92979 0.79959 0.76551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.91 71.98 0.71 -2.51 16 2 C -0.13 -3.73 5.63 30.59 0.17 -3.55 16 3 C -0.09 -2.14 4.23 30.59 0.13 -2.01 16 4 C -0.10 -2.55 2.17 -11.54 -0.03 -2.58 16 5 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 6 C -0.11 -2.23 5.34 30.59 0.16 -2.07 16 7 C -0.15 -2.23 9.57 71.98 0.69 -1.54 16 8 C 0.51 17.46 6.90 87.66 0.61 18.07 16 9 O -0.57 -23.83 13.75 -3.04 -0.04 -23.87 16 10 N -0.71 -23.52 5.03 -435.96 -2.19 -25.71 16 11 C 0.12 4.41 3.23 46.38 0.15 4.56 16 12 H 0.10 3.99 7.63 -2.38 -0.02 3.98 16 13 C 0.16 7.45 5.17 86.85 0.45 7.90 16 14 N -0.61 -27.61 3.40 -691.89 -2.35 -29.95 16 15 C -0.24 -11.90 10.27 84.03 0.86 -11.04 16 16 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 17 C -0.06 -3.12 5.49 84.86 0.47 -2.65 16 18 N -0.94 -54.63 10.09 21.65 0.22 -54.41 16 19 Si 0.98 43.58 29.55 68.60 2.03 45.60 16 20 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 C 0.13 4.33 6.27 86.73 0.54 4.88 16 24 C 0.13 3.92 3.97 46.18 0.18 4.11 16 25 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 26 N -0.28 -8.17 2.40 -321.54 -0.77 -8.94 16 27 C -0.03 -0.87 9.34 83.49 0.78 -0.09 16 28 C -0.05 -1.43 12.05 83.73 1.01 -0.42 16 29 N -0.29 -8.70 12.41 -58.26 -0.72 -9.42 16 30 N -0.11 -3.25 12.22 37.02 0.45 -2.80 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 1.52 6.19 -2.39 -0.01 1.50 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.72 6.43 -2.38 -0.02 1.71 16 37 H 0.06 1.52 7.90 -2.39 -0.02 1.50 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.33 7.41 -2.38 -0.02 1.31 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.91 6.70 -2.39 -0.02 0.90 16 43 H 0.40 12.39 6.09 -92.71 -0.56 11.83 16 44 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 45 H 0.07 4.11 5.88 -2.38 -0.01 4.09 16 46 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 47 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.05 1.68 7.18 -2.39 -0.02 1.67 16 49 H 0.18 5.85 7.71 -2.91 -0.02 5.83 16 50 H 0.22 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -65.67 392.05 3.88 -61.78 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.37 Total: 36.68 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 6.89 Total: 11.04 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -5.37 Total: -131.24 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.04 Total: -23.87 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -65.67 3.88 -61.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129353532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.997 kcal (2) G-P(sol) polarization free energy of solvation -65.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.47 seconds