Wall clock time and date at job start Tue Mar 31 2020 20:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 C 1.53004 * 109.47202 * 65.00360 * 3 2 1 5 5 C 1.53004 * 109.46710 * 185.31864 * 4 3 2 6 6 C 1.53004 * 109.47065 * 185.00338 * 3 2 1 7 7 C 1.50701 * 109.47210 * 67.17882 * 6 3 2 8 8 O 1.21281 * 119.99944 * 356.31758 * 7 6 3 9 9 N 1.34776 * 119.99962 * 176.31409 * 7 6 3 10 10 C 1.46497 * 119.99828 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.88822 * 31.12853 * 10 9 7 12 12 C 1.54906 * 111.00710 * 267.19666 * 10 9 7 13 13 N 1.47427 * 104.83334 * 204.91721 * 12 10 9 14 14 C 1.36930 * 125.64711 * 204.17159 * 13 12 10 15 15 H 1.08007 * 119.99747 * 179.97438 * 14 13 12 16 16 C 1.38813 * 120.00284 * 359.95089 * 14 13 12 17 17 N 1.31618 * 119.99915 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99888 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47025 * 90.00330 * 18 16 14 20 20 H 1.48503 * 109.46879 * 209.99840 * 18 16 14 21 21 H 1.48499 * 109.47558 * 329.99959 * 18 16 14 22 22 C 1.47026 * 108.70254 * 24.13162 * 13 12 10 23 23 C 1.54327 * 107.27093 * 358.93753 * 22 13 12 24 24 H 1.09001 * 110.72276 * 219.44506 * 23 22 13 25 25 N 1.46500 * 110.71854 * 96.17279 * 23 22 13 26 26 C 1.35317 * 125.87015 * 331.47646 * 25 23 22 27 27 C 1.35342 * 106.17766 * 180.02562 * 26 25 23 28 28 N 1.33779 * 106.49812 * 359.97438 * 27 26 25 29 29 N 1.28636 * 108.88021 * 359.74229 * 28 27 26 30 30 H 1.09003 * 109.47180 * 59.99766 * 1 2 3 31 31 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46789 * 300.00090 * 1 2 3 33 33 H 1.09003 * 109.46619 * 240.00432 * 2 1 3 34 34 H 1.08993 * 109.47215 * 120.00088 * 2 1 3 35 35 H 1.08999 * 109.47517 * 305.00064 * 3 2 1 36 36 H 1.08998 * 109.47006 * 305.31213 * 4 3 2 37 37 H 1.09000 * 109.46892 * 65.31716 * 4 3 2 38 38 H 1.09000 * 109.47389 * 54.74759 * 5 4 3 39 39 H 1.09003 * 109.46718 * 174.74881 * 5 4 3 40 40 H 1.09001 * 109.47101 * 294.74366 * 5 4 3 41 41 H 1.09002 * 109.46497 * 307.18249 * 6 3 2 42 42 H 1.08995 * 109.47027 * 187.18271 * 6 3 2 43 43 H 0.97001 * 120.00052 * 0.02562 * 9 7 6 44 44 H 1.08995 * 110.36792 * 323.75528 * 12 10 9 45 45 H 1.09001 * 110.36843 * 86.07984 * 12 10 9 46 46 H 0.97000 * 119.99921 * 180.02562 * 17 16 14 47 47 H 1.08999 * 109.88181 * 239.52194 * 22 13 12 48 48 H 1.08998 * 109.88063 * 118.35612 * 22 13 12 49 49 H 1.08003 * 126.91268 * 0.02562 * 26 25 23 50 50 H 1.08005 * 126.75581 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0282 3.6042 1.2527 6 6 3.5648 1.4444 -0.1258 7 6 3.9572 0.9322 -1.4877 8 8 3.1056 0.5359 -2.2550 9 7 5.2543 0.9147 -1.8531 10 6 5.6357 0.4163 -3.1769 11 1 4.8503 0.6117 -3.9068 12 6 5.9825 -1.0925 -3.1234 13 7 6.8900 -1.3118 -4.2644 14 6 7.0930 -2.5051 -4.9047 15 1 7.7818 -2.5623 -5.7346 16 6 6.4140 -3.6414 -4.4867 17 7 5.5746 -3.5718 -3.4753 18 14 6.6906 -5.2690 -5.3606 19 1 7.8071 -5.9983 -4.7071 20 1 5.4537 -6.0875 -5.2856 21 1 7.0307 -5.0154 -6.7837 22 6 7.5400 -0.0370 -4.6017 23 6 6.9853 1.0301 -3.6345 24 1 6.8230 1.9745 -4.1541 25 7 7.8852 1.2129 -2.4930 26 6 8.7085 0.2728 -1.9739 27 6 9.3510 0.8637 -0.9396 28 7 8.8958 2.1202 -0.8776 29 7 8.0329 2.2970 -1.8151 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.6054 1.9816 -0.8418 36 1 0.5570 2.0421 1.4430 37 1 2.1453 1.6456 2.1421 38 1 1.5930 4.0633 0.3650 39 1 1.6576 4.1119 2.1432 40 1 3.1140 3.6901 1.2109 41 1 3.9934 0.8002 0.6419 42 1 3.9387 2.4602 0.0020 43 1 5.9354 1.2314 -1.2393 44 1 6.4856 -1.3332 -2.1870 45 1 5.0800 -1.6934 -3.2356 46 1 5.1004 -4.3659 -3.1831 47 1 7.3062 0.2377 -5.6302 48 1 8.6190 -0.1264 -4.4757 49 1 8.8288 -0.7445 -2.3161 50 1 10.0871 0.4105 -0.2922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129365400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:52 Heat of formation + Delta-G solvation = 80.222181 kcal Electronic energy + Delta-G solvation = -30615.803245 eV Core-core repulsion = 26680.954052 eV Total energy + Delta-G solvation = -3934.849194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.08494 -39.83778 -38.15881 -36.61731 -34.20211 -33.48154 -31.82140 -31.70307 -30.71660 -30.13099 -28.67055 -27.53730 -25.27484 -24.63241 -22.71831 -22.54835 -22.37758 -21.01950 -20.19880 -20.05225 -19.62193 -17.77428 -17.27153 -16.93629 -15.82845 -15.53261 -15.20316 -14.89985 -14.68608 -14.50749 -14.42831 -14.12198 -13.97874 -13.56212 -13.42315 -13.17396 -12.97034 -12.67160 -12.58444 -12.38362 -11.98016 -11.92956 -11.81409 -11.50809 -11.43867 -11.31898 -11.13657 -11.04954 -10.80315 -10.73895 -10.55138 -10.52127 -10.40308 -10.36337 -10.21499 -9.98993 -9.85917 -9.38365 -9.11098 -8.86334 -8.64370 -7.14925 -5.85546 -3.32318 1.86000 2.53444 2.79799 2.93984 3.29363 3.34554 3.37657 3.39793 4.28626 4.53602 4.70344 4.72014 4.77577 4.84620 4.88363 5.05816 5.15003 5.20208 5.30397 5.37222 5.38376 5.42128 5.48110 5.52346 5.53791 5.55236 5.73355 5.76328 5.76823 5.81401 5.88277 5.90115 5.99775 6.05830 6.10310 6.14487 6.16956 6.21971 6.28658 6.39026 6.49885 6.55937 6.70096 6.90587 7.14453 7.37919 7.62181 7.74867 8.10084 8.52152 8.73685 8.96169 9.56864 10.14499 11.17322 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009123 B = 0.004290 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.556589 B = 6524.601925 C = 8901.554167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.069 4.069 4 C -0.122 4.122 5 C -0.156 4.156 6 C -0.139 4.139 7 C 0.515 3.485 8 O -0.530 6.530 9 N -0.719 5.719 10 C 0.111 3.889 11 H 0.116 0.884 12 C 0.145 3.855 13 N -0.598 5.598 14 C -0.237 4.237 15 H 0.082 0.918 16 C -0.001 4.001 17 N -0.914 5.914 18 Si 0.918 3.082 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.129 3.871 23 C 0.116 3.884 24 H 0.119 0.881 25 N -0.275 5.275 26 C -0.017 4.017 27 C -0.068 4.068 28 N -0.278 5.278 29 N -0.103 5.103 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.395 0.605 44 H 0.020 0.980 45 H 0.121 0.879 46 H 0.256 0.744 47 H 0.055 0.945 48 H 0.041 0.959 49 H 0.194 0.806 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.432 10.215 7.471 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.087 4.087 4 C -0.160 4.160 5 C -0.213 4.213 6 C -0.179 4.179 7 C 0.302 3.698 8 O -0.406 6.406 9 N -0.371 5.371 10 C 0.004 3.996 11 H 0.133 0.867 12 C 0.019 3.981 13 N -0.326 5.326 14 C -0.365 4.365 15 H 0.100 0.900 16 C -0.198 4.198 17 N -0.560 5.560 18 Si 0.748 3.252 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.002 3.998 23 C 0.013 3.987 24 H 0.137 0.863 25 N -0.069 5.069 26 C -0.169 4.169 27 C -0.225 4.225 28 N -0.144 5.144 29 N -0.082 5.082 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.229 0.771 44 H 0.038 0.962 45 H 0.139 0.861 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.211 0.789 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.597 11.179 7.072 13.708 hybrid contribution 1.003 -1.902 -0.300 2.171 sum -2.594 9.276 6.772 11.775 Atomic orbital electron populations 1.21766 0.96283 1.01243 1.01205 1.21703 0.95701 0.96007 1.03091 1.20960 0.92713 0.97178 0.97887 1.21656 1.01453 0.95426 0.97427 1.21852 1.01562 0.96368 1.01501 1.21807 0.98345 1.02819 0.94933 1.20627 0.82012 0.77927 0.89264 1.90688 1.49343 1.46779 1.53781 1.45861 1.08275 1.65624 1.17353 1.23027 0.93390 0.97962 0.85271 0.86675 1.22395 0.97883 0.88447 0.89332 1.44398 1.48106 1.03675 1.36382 1.19012 1.21896 0.83931 1.11631 0.89984 1.24827 0.98670 0.98231 0.98047 1.69751 1.30184 1.28219 1.27871 0.86037 0.77217 0.83062 0.78896 1.21436 1.21490 1.20524 1.21659 0.96775 0.85973 0.95404 1.23230 0.89305 1.01909 0.84305 0.86299 1.47449 1.27769 1.08168 1.23483 1.23886 0.95878 0.98860 0.98276 1.23539 1.05529 0.92210 1.01247 1.75045 1.07811 1.16848 1.14679 1.78246 1.17089 1.09046 1.03802 0.92843 0.93095 0.93193 0.89542 0.92809 0.90443 0.91462 0.92041 0.92704 0.92982 0.92576 0.89104 0.89061 0.77067 0.96192 0.86104 0.93297 0.92725 0.94119 0.78939 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 37.16 0.36 -1.35 16 2 C -0.13 -1.69 5.20 -26.73 -0.14 -1.82 16 3 C -0.07 -0.82 1.49 -90.62 -0.14 -0.95 16 4 C -0.12 -1.17 5.27 -26.73 -0.14 -1.31 16 5 C -0.16 -1.36 9.55 37.16 0.36 -1.01 16 6 C -0.14 -1.73 5.06 -27.88 -0.14 -1.87 16 7 C 0.52 8.41 7.56 -10.99 -0.08 8.33 16 8 O -0.53 -10.38 13.64 5.56 0.08 -10.31 16 9 N -0.72 -11.68 5.16 -51.73 -0.27 -11.94 16 10 C 0.11 1.97 3.29 -65.78 -0.22 1.76 16 11 H 0.12 2.18 7.54 -51.93 -0.39 1.79 16 12 C 0.15 3.19 5.17 -2.53 -0.01 3.17 16 13 N -0.60 -13.26 3.39 -170.07 -0.58 -13.84 16 14 C -0.24 -5.92 10.27 -15.06 -0.15 -6.08 16 15 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 16 C 0.00 -0.02 5.49 -17.43 -0.10 -0.12 16 17 N -0.91 -25.01 10.09 55.49 0.56 -24.45 16 18 Si 0.92 20.73 29.55 -169.99 -5.02 15.71 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.13 2.25 6.28 -3.06 -0.02 2.23 16 23 C 0.12 1.80 3.97 -66.09 -0.26 1.54 16 24 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 25 N -0.28 -4.29 2.38 -52.98 -0.13 -4.42 16 26 C -0.02 -0.27 9.35 -17.05 -0.16 -0.43 16 27 C -0.07 -0.97 12.05 -17.74 -0.21 -1.19 16 28 N -0.28 -4.50 12.41 30.24 0.38 -4.13 16 29 N -0.10 -1.67 12.30 60.35 0.74 -0.93 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.49 6.46 -51.93 -0.34 0.16 16 33 H 0.09 1.44 5.95 -51.93 -0.31 1.13 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 36 H 0.07 0.61 6.33 -51.93 -0.33 0.28 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.49 6.68 -51.93 -0.35 0.14 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.00 6.38 -51.93 -0.33 0.66 16 43 H 0.39 6.16 6.82 -40.82 -0.28 5.89 16 44 H 0.02 0.47 7.59 -51.93 -0.39 0.08 16 45 H 0.12 3.20 5.87 -51.93 -0.30 2.90 16 46 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.04 0.70 7.16 -51.93 -0.37 0.33 16 49 H 0.19 3.10 7.70 -52.48 -0.40 2.70 16 50 H 0.19 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -28.75 389.81 -7.41 -36.16 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.98 Total: 11.36 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.06 Total: 0.91 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.71 Total: -59.71 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.75 -7.41 -36.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129365400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.380 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds