Wall clock time and date at job start Tue Mar 31 2020 20:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 C 1.53004 * 109.47202 * 65.00360 * 3 2 1 5 5 C 1.53004 * 109.46710 * 185.31864 * 4 3 2 6 6 C 1.53004 * 109.47065 * 185.00338 * 3 2 1 7 7 C 1.50701 * 109.47210 * 67.17882 * 6 3 2 8 8 O 1.21281 * 119.99944 * 356.31758 * 7 6 3 9 9 N 1.34776 * 119.99962 * 176.31409 * 7 6 3 10 10 C 1.46497 * 119.99828 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.88822 * 31.12853 * 10 9 7 12 12 C 1.54906 * 111.00710 * 267.19666 * 10 9 7 13 13 N 1.47427 * 104.83334 * 204.91721 * 12 10 9 14 14 C 1.36930 * 125.64711 * 204.17159 * 13 12 10 15 15 H 1.08007 * 119.99747 * 179.97438 * 14 13 12 16 16 C 1.38813 * 120.00284 * 359.95089 * 14 13 12 17 17 N 1.31618 * 119.99915 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99888 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47025 * 90.00330 * 18 16 14 20 20 H 1.48503 * 109.46879 * 209.99840 * 18 16 14 21 21 H 1.48499 * 109.47558 * 329.99959 * 18 16 14 22 22 C 1.47026 * 108.70254 * 24.13162 * 13 12 10 23 23 C 1.54327 * 107.27093 * 358.93753 * 22 13 12 24 24 H 1.09001 * 110.72276 * 219.44506 * 23 22 13 25 25 N 1.46500 * 110.71854 * 96.17279 * 23 22 13 26 26 C 1.35317 * 125.87015 * 331.47646 * 25 23 22 27 27 C 1.35342 * 106.17766 * 180.02562 * 26 25 23 28 28 N 1.33779 * 106.49812 * 359.97438 * 27 26 25 29 29 N 1.28636 * 108.88021 * 359.74229 * 28 27 26 30 30 H 1.09003 * 109.47180 * 59.99766 * 1 2 3 31 31 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46789 * 300.00090 * 1 2 3 33 33 H 1.09003 * 109.46619 * 240.00432 * 2 1 3 34 34 H 1.08993 * 109.47215 * 120.00088 * 2 1 3 35 35 H 1.08999 * 109.47517 * 305.00064 * 3 2 1 36 36 H 1.08998 * 109.47006 * 305.31213 * 4 3 2 37 37 H 1.09000 * 109.46892 * 65.31716 * 4 3 2 38 38 H 1.09000 * 109.47389 * 54.74759 * 5 4 3 39 39 H 1.09003 * 109.46718 * 174.74881 * 5 4 3 40 40 H 1.09001 * 109.47101 * 294.74366 * 5 4 3 41 41 H 1.09002 * 109.46497 * 307.18249 * 6 3 2 42 42 H 1.08995 * 109.47027 * 187.18271 * 6 3 2 43 43 H 0.97001 * 120.00052 * 0.02562 * 9 7 6 44 44 H 1.08995 * 110.36792 * 323.75528 * 12 10 9 45 45 H 1.09001 * 110.36843 * 86.07984 * 12 10 9 46 46 H 0.97000 * 119.99921 * 180.02562 * 17 16 14 47 47 H 1.08999 * 109.88181 * 239.52194 * 22 13 12 48 48 H 1.08998 * 109.88063 * 118.35612 * 22 13 12 49 49 H 1.08003 * 126.91268 * 0.02562 * 26 25 23 50 50 H 1.08005 * 126.75581 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0282 3.6042 1.2527 6 6 3.5648 1.4444 -0.1258 7 6 3.9572 0.9322 -1.4877 8 8 3.1056 0.5359 -2.2550 9 7 5.2543 0.9147 -1.8531 10 6 5.6357 0.4163 -3.1769 11 1 4.8503 0.6117 -3.9068 12 6 5.9825 -1.0925 -3.1234 13 7 6.8900 -1.3118 -4.2644 14 6 7.0930 -2.5051 -4.9047 15 1 7.7818 -2.5623 -5.7346 16 6 6.4140 -3.6414 -4.4867 17 7 5.5746 -3.5718 -3.4753 18 14 6.6906 -5.2690 -5.3606 19 1 7.8071 -5.9983 -4.7071 20 1 5.4537 -6.0875 -5.2856 21 1 7.0307 -5.0154 -6.7837 22 6 7.5400 -0.0370 -4.6017 23 6 6.9853 1.0301 -3.6345 24 1 6.8230 1.9745 -4.1541 25 7 7.8852 1.2129 -2.4930 26 6 8.7085 0.2728 -1.9739 27 6 9.3510 0.8637 -0.9396 28 7 8.8958 2.1202 -0.8776 29 7 8.0329 2.2970 -1.8151 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.6054 1.9816 -0.8418 36 1 0.5570 2.0421 1.4430 37 1 2.1453 1.6456 2.1421 38 1 1.5930 4.0633 0.3650 39 1 1.6576 4.1119 2.1432 40 1 3.1140 3.6901 1.2109 41 1 3.9934 0.8002 0.6419 42 1 3.9387 2.4602 0.0020 43 1 5.9354 1.2314 -1.2393 44 1 6.4856 -1.3332 -2.1870 45 1 5.0800 -1.6934 -3.2356 46 1 5.1004 -4.3659 -3.1831 47 1 7.3062 0.2377 -5.6302 48 1 8.6190 -0.1264 -4.4757 49 1 8.8288 -0.7445 -2.3161 50 1 10.0871 0.4105 -0.2922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129365400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:51 Heat of formation + Delta-G solvation = 62.975457 kcal Electronic energy + Delta-G solvation = -30616.551119 eV Core-core repulsion = 26680.954052 eV Total energy + Delta-G solvation = -3935.597068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.32260 -41.17406 -39.57631 -37.70864 -35.81741 -34.86270 -33.47861 -32.60907 -31.93542 -31.33582 -30.13461 -29.03763 -26.81938 -25.81574 -24.04274 -23.63335 -23.48435 -22.48095 -21.53209 -21.52051 -20.64787 -19.29666 -18.62077 -18.47036 -17.21636 -16.89945 -16.60330 -16.26374 -15.95905 -15.73061 -15.61573 -15.48676 -15.02200 -14.83641 -14.66505 -14.48070 -14.36643 -13.99558 -13.93521 -13.59889 -13.30808 -13.17632 -12.86505 -12.82672 -12.75283 -12.69569 -12.38685 -12.31784 -12.24884 -12.09733 -12.01530 -11.92349 -11.81746 -11.47983 -11.41409 -11.30120 -11.17314 -10.78766 -10.67638 -10.31351 -10.11106 -9.00655 -7.81311 -5.28631 0.60521 1.26618 1.48463 1.49634 1.57916 1.61630 1.62261 2.06599 2.46691 3.17464 3.32711 3.37393 3.51144 3.68040 3.71626 3.81796 3.88063 3.92444 4.12673 4.18051 4.29596 4.32118 4.37755 4.40531 4.46516 4.52776 4.61178 4.63701 4.68689 4.76284 4.78403 4.79481 4.94121 4.96670 5.10744 5.14120 5.16127 5.26948 5.27960 5.31651 5.42904 5.47349 5.47649 5.56402 5.57638 5.63766 5.71393 6.19779 6.41635 7.00716 7.20723 7.50741 7.68166 8.26648 9.19300 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009123 B = 0.004290 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.556589 B = 6524.601925 C = 8901.554167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C -0.064 4.064 4 C -0.115 4.115 5 C -0.155 4.155 6 C -0.132 4.132 7 C 0.508 3.492 8 O -0.567 6.567 9 N -0.713 5.713 10 C 0.122 3.878 11 H 0.104 0.896 12 C 0.161 3.839 13 N -0.614 5.614 14 C -0.236 4.236 15 H 0.093 0.907 16 C -0.058 4.058 17 N -0.945 5.945 18 Si 0.977 3.023 19 H -0.286 1.286 20 H -0.302 1.302 21 H -0.267 1.267 22 C 0.129 3.871 23 C 0.131 3.869 24 H 0.151 0.849 25 N -0.275 5.275 26 C -0.029 4.029 27 C -0.054 4.054 28 N -0.291 5.291 29 N -0.108 5.108 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.400 0.600 44 H -0.001 1.001 45 H 0.072 0.928 46 H 0.245 0.755 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.184 0.816 50 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 12.041 8.318 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.083 4.083 4 C -0.153 4.153 5 C -0.212 4.212 6 C -0.171 4.171 7 C 0.297 3.703 8 O -0.446 6.446 9 N -0.365 5.365 10 C 0.014 3.986 11 H 0.122 0.878 12 C 0.035 3.965 13 N -0.341 5.341 14 C -0.364 4.364 15 H 0.110 0.890 16 C -0.251 4.251 17 N -0.593 5.593 18 Si 0.805 3.195 19 H -0.213 1.213 20 H -0.229 1.229 21 H -0.191 1.191 22 C 0.003 3.997 23 C 0.028 3.972 24 H 0.168 0.832 25 N -0.069 5.069 26 C -0.181 4.181 27 C -0.211 4.211 28 N -0.157 5.157 29 N -0.087 5.087 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.132 0.868 43 H 0.236 0.764 44 H 0.017 0.983 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.201 0.799 50 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.457 13.051 7.916 15.461 hybrid contribution 0.703 -2.461 -0.565 2.621 sum -1.755 10.590 7.351 13.010 Atomic orbital electron populations 1.21740 0.94997 1.01443 1.01960 1.21657 0.96943 0.96691 1.01286 1.20923 0.92141 0.96262 0.98961 1.21606 1.02032 0.95785 0.95828 1.21851 1.01689 0.95665 1.02034 1.21865 0.98886 1.04004 0.92351 1.21419 0.81470 0.77029 0.90383 1.90682 1.50293 1.48328 1.55256 1.45822 1.08589 1.65248 1.16851 1.22603 0.94458 0.95490 0.86062 0.87839 1.21915 0.95503 0.90618 0.88505 1.44530 1.48711 1.04728 1.36175 1.19402 1.20836 0.84924 1.11287 0.88975 1.25574 0.99186 1.01291 0.99082 1.70040 1.31606 1.28043 1.29656 0.85107 0.76298 0.79516 0.78542 1.21252 1.22882 1.19150 1.21809 0.96941 0.84286 0.96690 1.23095 0.87520 1.02523 0.84017 0.83195 1.47417 1.27764 1.08237 1.23475 1.23900 0.96547 0.98598 0.99025 1.24036 1.05081 0.91316 1.00667 1.75052 1.08142 1.17709 1.14815 1.78241 1.17360 1.09046 1.04020 0.93605 0.93244 0.90828 0.93771 0.92093 0.91987 0.90701 0.91119 0.93099 0.91587 0.92420 0.87940 0.86765 0.76377 0.98323 0.91011 0.94526 0.90888 0.92992 0.79901 0.76540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.67 71.98 0.70 -2.60 16 2 C -0.13 -3.44 5.20 30.60 0.16 -3.29 16 3 C -0.06 -1.49 1.49 -10.79 -0.02 -1.50 16 4 C -0.12 -1.94 5.27 30.60 0.16 -1.78 16 5 C -0.16 -2.32 9.55 71.98 0.69 -1.63 16 6 C -0.13 -3.15 5.06 29.85 0.15 -3.00 16 7 C 0.51 16.88 7.56 87.66 0.66 17.55 16 8 O -0.57 -23.35 13.64 -3.03 -0.04 -23.39 16 9 N -0.71 -23.15 5.16 -435.97 -2.25 -25.40 16 10 C 0.12 4.39 3.29 46.38 0.15 4.54 16 11 H 0.10 4.01 7.54 -2.39 -0.02 4.00 16 12 C 0.16 7.34 5.17 86.85 0.45 7.79 16 13 N -0.61 -27.46 3.39 -691.98 -2.35 -29.81 16 14 C -0.24 -11.85 10.27 84.03 0.86 -10.99 16 15 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.06 -3.08 5.49 84.86 0.47 -2.61 16 17 N -0.94 -54.22 10.09 21.65 0.22 -54.00 16 18 Si 0.98 43.40 29.55 68.60 2.03 45.43 16 19 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 C 0.13 4.31 6.28 86.73 0.54 4.85 16 23 C 0.13 3.89 3.97 46.18 0.18 4.08 16 24 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 25 N -0.28 -8.11 2.38 -321.53 -0.76 -8.87 16 26 C -0.03 -0.86 9.35 83.49 0.78 -0.08 16 27 C -0.05 -1.42 12.05 83.73 1.01 -0.41 16 28 N -0.29 -8.74 12.41 -58.25 -0.72 -9.46 16 29 N -0.11 -3.27 12.30 37.02 0.46 -2.82 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.32 6.46 -2.39 -0.02 1.31 16 33 H 0.04 1.57 5.95 -2.39 -0.01 1.55 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16 36 H 0.07 1.16 6.33 -2.39 -0.02 1.15 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.84 6.68 -2.39 -0.02 0.83 16 41 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.11 2.24 6.38 -2.39 -0.02 2.22 16 43 H 0.40 12.13 6.82 -92.71 -0.63 11.50 16 44 H 0.00 -0.05 7.59 -2.39 -0.02 -0.07 16 45 H 0.07 4.05 5.87 -2.39 -0.01 4.04 16 46 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 47 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.05 1.68 7.16 -2.39 -0.02 1.66 16 49 H 0.18 5.80 7.70 -2.91 -0.02 5.78 16 50 H 0.22 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -65.17 389.81 3.84 -61.34 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.31 Total: 36.07 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.95 Total: 10.92 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -5.41 Total: -130.36 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.39 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.17 3.84 -61.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129365400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.311 kcal (2) G-P(sol) polarization free energy of solvation -65.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds