Wall clock time and date at job start Tue Mar 31 2020 20:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53001 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00011 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00115 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.63669 * 36.68773 * 10 9 7 12 12 C 1.54320 * 110.71690 * 273.54289 * 10 9 7 13 13 N 1.47021 * 107.27151 * 219.44349 * 12 10 9 14 14 C 1.36937 * 125.64822 * 178.90895 * 13 12 10 15 15 H 1.07996 * 119.99772 * 180.02562 * 14 13 12 16 16 C 1.38809 * 119.99968 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00440 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99943 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47279 * 90.00215 * 18 16 14 20 20 H 1.48500 * 109.46948 * 210.00248 * 18 16 14 21 21 H 1.48503 * 109.46916 * 330.00178 * 18 16 14 22 22 C 1.47421 * 108.70255 * 358.94121 * 13 12 10 23 23 C 1.54910 * 104.83213 * 24.13304 * 22 13 12 24 24 H 1.09001 * 111.00469 * 204.91270 * 23 22 13 25 25 N 1.46501 * 111.00907 * 81.05858 * 23 22 13 26 26 C 1.35311 * 125.86839 * 332.80908 * 25 23 22 27 27 C 1.35346 * 106.17441 * 179.97438 * 26 25 23 28 28 N 1.33764 * 106.50034 * 359.97438 * 27 26 25 29 29 N 1.28638 * 108.88444 * 359.73728 * 28 27 26 30 30 H 1.08992 * 109.47457 * 59.99756 * 1 2 3 31 31 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47420 * 299.99415 * 1 2 3 33 33 H 1.08992 * 109.46876 * 240.00480 * 2 1 3 34 34 H 1.09001 * 109.46735 * 120.00028 * 2 1 3 35 35 H 1.09001 * 109.46741 * 60.00169 * 3 2 1 36 36 H 1.09002 * 109.47398 * 300.00272 * 3 2 1 37 37 H 1.09001 * 109.46652 * 60.00345 * 4 3 2 38 38 H 1.08992 * 109.47514 * 300.00434 * 4 3 2 39 39 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 40 40 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 41 41 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 42 42 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 43 43 H 0.97003 * 119.99640 * 0.02562 * 9 7 6 44 44 H 1.08996 * 109.88720 * 338.86823 * 12 10 9 45 45 H 1.09007 * 109.88142 * 100.02708 * 12 10 9 46 46 H 0.96996 * 120.00733 * 179.97438 * 17 16 14 47 47 H 1.09003 * 110.36685 * 142.96521 * 22 13 12 48 48 H 1.08997 * 110.37208 * 265.28949 * 22 13 12 49 49 H 1.07999 * 126.91172 * 0.02562 * 26 25 23 50 50 H 1.08003 * 126.75095 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0013 6 6 5.6098 2.8853 0.0013 7 6 6.1121 4.3061 0.0026 8 8 5.3239 5.2279 0.0039 9 7 7.4371 4.5524 0.0023 10 6 7.9254 5.9337 0.0041 11 1 7.2825 6.5676 0.6147 12 6 8.0225 6.4803 -1.4358 13 7 9.2498 7.2859 -1.5151 14 6 9.7115 7.9291 -2.6324 15 1 10.6284 8.4980 -2.5877 16 6 9.0010 7.8499 -3.8222 17 7 7.8833 7.1570 -3.8765 18 14 9.6312 8.7268 -5.3465 19 1 10.5239 7.8164 -6.1078 20 1 8.4825 9.1220 -6.2006 21 1 10.3881 9.9389 -4.9428 22 6 9.9015 7.2859 -0.1927 23 6 9.3946 5.9960 0.4992 24 1 9.4375 6.0918 1.5841 25 7 10.1510 4.8256 0.0472 26 6 10.7663 4.6934 -1.1506 27 6 11.3391 3.4671 -1.1470 28 7 11.0506 2.9166 0.0375 29 7 10.3505 3.7491 0.7241 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6765 1.9563 0.8900 36 1 1.6765 1.9564 -0.8900 37 1 3.9336 0.9287 -0.8892 38 1 3.9330 0.9289 0.8907 39 1 3.7168 3.3993 -0.8886 40 1 3.7162 3.3987 0.8913 41 1 5.9732 2.3710 0.8910 42 1 5.9732 2.3719 -0.8889 43 1 8.0675 3.8152 0.0008 44 1 8.0757 5.6531 -2.1436 45 1 7.1553 7.1033 -1.6552 46 1 7.3866 7.1019 -4.7078 47 1 10.9854 7.2558 -0.3039 48 1 9.6021 8.1651 0.3778 49 1 10.7952 5.4205 -1.9487 50 1 11.9164 3.0212 -1.9434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129421714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:56 Heat of formation + Delta-G solvation = 70.964095 kcal Electronic energy + Delta-G solvation = -29692.704657 eV Core-core repulsion = 25757.454003 eV Total energy + Delta-G solvation = -3935.250654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.94905 -39.66404 -37.93949 -36.45748 -34.17482 -33.41834 -33.39278 -31.75712 -30.55132 -29.71123 -28.66067 -27.54222 -25.23183 -24.53837 -22.67990 -22.20708 -21.67953 -21.11709 -20.57918 -20.10598 -19.78507 -17.69961 -17.13495 -16.78965 -16.20165 -15.74113 -15.38911 -15.25847 -14.75980 -14.46451 -14.22308 -14.13929 -13.88304 -13.74392 -13.51403 -13.26536 -12.85138 -12.72721 -12.55495 -12.37134 -12.28800 -11.80539 -11.55846 -11.54324 -11.36924 -11.31382 -11.11724 -11.03874 -10.84979 -10.84413 -10.73227 -10.64734 -10.56504 -10.54679 -10.24550 -10.00287 -9.77686 -9.53561 -8.96432 -8.85066 -8.67460 -7.15578 -5.92252 -3.31988 1.99472 2.63954 2.92652 2.93645 3.27952 3.33765 3.36621 3.40351 4.28648 4.49448 4.58005 4.73095 4.74479 4.82012 4.95931 4.97849 5.01692 5.08041 5.13606 5.30030 5.30437 5.36280 5.43921 5.55548 5.56667 5.60500 5.64028 5.67651 5.74429 5.79710 5.82815 5.83909 5.86470 5.94703 5.99204 6.05254 6.14062 6.14433 6.18547 6.26769 6.36775 6.53283 6.60732 7.04560 7.29575 7.32550 7.61414 7.74602 7.96841 8.50383 8.85480 8.94787 9.54816 10.14360 11.17355 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010417 B = 0.003026 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.264491 B = 9251.340901 C =10828.788424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.140 4.140 7 C 0.515 3.485 8 O -0.536 6.536 9 N -0.719 5.719 10 C 0.111 3.889 11 H 0.109 0.891 12 C 0.169 3.831 13 N -0.602 5.602 14 C -0.246 4.246 15 H 0.083 0.917 16 C 0.002 3.998 17 N -0.911 5.911 18 Si 0.914 3.086 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.128 3.872 23 C 0.114 3.886 24 H 0.119 0.881 25 N -0.276 5.276 26 C -0.004 4.004 27 C -0.076 4.076 28 N -0.278 5.278 29 N -0.111 5.111 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.397 0.603 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.256 0.744 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.204 0.796 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 -10.206 8.034 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.141 4.141 6 C -0.180 4.180 7 C 0.301 3.699 8 O -0.413 6.413 9 N -0.371 5.371 10 C 0.004 3.996 11 H 0.127 0.873 12 C 0.043 3.957 13 N -0.330 5.330 14 C -0.373 4.373 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.556 5.556 18 Si 0.744 3.256 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.000 4.000 23 C 0.010 3.990 24 H 0.137 0.863 25 N -0.069 5.069 26 C -0.156 4.156 27 C -0.233 4.233 28 N -0.144 5.144 29 N -0.091 5.091 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.232 0.768 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.220 0.780 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.452 -10.231 9.144 14.765 hybrid contribution 0.809 0.811 -1.947 2.259 sum -4.643 -9.420 7.198 12.731 Atomic orbital electron populations 1.21785 0.96077 1.01382 1.01842 1.21544 0.95715 0.97149 1.01889 1.21618 0.95423 0.96494 1.02296 1.21625 0.95438 0.96730 1.01991 1.21333 0.92689 0.96369 1.03667 1.21675 0.98067 0.94045 1.04205 1.20642 0.81954 0.91695 0.75568 1.90704 1.55067 1.46423 1.49089 1.45922 1.07382 1.08206 1.75630 1.22825 0.91140 0.83894 1.01725 0.87335 1.21634 0.90156 0.95418 0.88455 1.44490 1.23965 1.59457 1.05046 1.18983 1.06279 1.25921 0.86132 0.89926 1.24858 0.96903 0.99735 0.98079 1.69946 1.15931 1.43495 1.26275 0.86102 0.77673 0.79142 0.82675 1.21350 1.21565 1.20551 1.21933 0.97747 0.91612 0.88687 1.23343 0.91494 0.83730 1.00478 0.86335 1.47265 1.34455 1.13606 1.11551 1.24194 0.98476 1.01128 0.91771 1.23541 1.07255 0.94265 0.98191 1.75002 1.11769 1.23214 1.04420 1.78208 1.17829 0.92042 1.20973 0.92744 0.92975 0.92804 0.92100 0.92169 0.91985 0.91860 0.91951 0.92060 0.91043 0.91294 0.89195 0.89103 0.76775 0.92446 0.92289 0.93323 0.92299 0.92854 0.77964 0.79863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.09 5.21 -26.73 -0.14 -1.23 16 4 C -0.12 -1.15 5.21 -26.73 -0.14 -1.28 16 5 C -0.10 -1.23 4.50 -26.73 -0.12 -1.35 16 6 C -0.14 -1.76 5.70 -27.89 -0.16 -1.92 16 7 C 0.51 8.64 7.83 -10.99 -0.09 8.56 16 8 O -0.54 -10.89 15.71 5.56 0.09 -10.80 16 9 N -0.72 -11.93 5.08 -52.03 -0.26 -12.20 16 10 C 0.11 1.96 3.11 -66.09 -0.21 1.75 16 11 H 0.11 1.93 7.69 -51.93 -0.40 1.53 16 12 C 0.17 3.74 4.75 -3.07 -0.01 3.72 16 13 N -0.60 -13.06 2.23 -170.08 -0.38 -13.44 16 14 C -0.25 -5.98 10.06 -15.06 -0.15 -6.14 16 15 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 16 C 0.00 0.06 5.49 -17.43 -0.10 -0.04 16 17 N -0.91 -24.93 10.31 55.49 0.57 -24.35 16 18 Si 0.91 20.52 29.55 -169.99 -5.02 15.50 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.13 2.17 6.21 -2.53 -0.02 2.16 16 23 C 0.11 1.76 4.06 -65.78 -0.27 1.49 16 24 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 25 N -0.28 -4.49 2.45 -52.68 -0.13 -4.62 16 26 C 0.00 -0.07 10.01 -17.05 -0.17 -0.24 16 27 C -0.08 -1.18 12.05 -17.74 -0.21 -1.40 16 28 N -0.28 -4.75 12.41 30.23 0.38 -4.37 16 29 N -0.11 -1.89 12.21 60.35 0.74 -1.15 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.98 8.10 -51.93 -0.42 0.55 16 40 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.40 6.40 6.73 -40.82 -0.27 6.13 16 44 H 0.06 1.44 7.27 -51.93 -0.38 1.06 16 45 H 0.06 1.55 7.51 -51.93 -0.39 1.16 16 46 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.20 3.74 6.81 -52.49 -0.36 3.38 16 50 H 0.18 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -29.12 401.42 -8.06 -37.18 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -8.51 Total: 10.02 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.57 Total: 2.19 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.91 Total: -60.13 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.12 -8.06 -37.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129421714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.142 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds