Wall clock time and date at job start Tue Mar 31 2020 20:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47318 * 2 1 4 4 C 1.53006 * 109.47116 * 299.99934 * 3 2 1 5 5 C 1.52999 * 109.47133 * 60.00074 * 3 2 1 6 6 C 1.52996 * 109.47404 * 60.00290 * 5 3 2 7 7 C 1.50707 * 109.47453 * 180.02562 * 3 2 1 8 8 O 1.21279 * 119.99786 * 359.97438 * 7 3 2 9 9 N 1.34778 * 119.99750 * 180.02562 * 7 3 2 10 10 C 1.46500 * 119.99379 * 179.97438 * 9 7 3 11 11 H 1.08999 * 110.64152 * 31.86309 * 10 9 7 12 12 C 1.54316 * 110.72232 * 268.51936 * 10 9 7 13 13 N 1.47020 * 107.27568 * 219.44595 * 12 10 9 14 14 C 1.36938 * 125.65236 * 178.97773 * 13 12 10 15 15 H 1.07994 * 120.00035 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99774 * 359.95644 * 14 13 12 17 17 N 1.31617 * 120.00082 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99981 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47043 * 90.00332 * 18 16 14 20 20 H 1.48496 * 109.46910 * 210.00251 * 18 16 14 21 21 H 1.48497 * 109.47083 * 330.00433 * 18 16 14 22 22 C 1.47422 * 108.70191 * 358.94070 * 13 12 10 23 23 C 1.54917 * 104.83074 * 24.12901 * 22 13 12 24 24 H 1.09006 * 111.00207 * 204.91491 * 23 22 13 25 25 N 1.46501 * 111.00397 * 81.06403 * 23 22 13 26 26 C 1.35308 * 125.86825 * 326.16784 * 25 23 22 27 27 C 1.35356 * 106.17456 * 179.90460 * 26 25 23 28 28 N 1.33766 * 106.49494 * 0.35559 * 27 26 25 29 29 N 1.28633 * 108.88748 * 359.77102 * 28 27 26 30 30 H 1.09006 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47097 * 299.99507 * 1 2 3 32 32 H 1.08995 * 109.46922 * 60.00321 * 1 2 3 33 33 H 1.09001 * 109.46973 * 239.99717 * 2 1 3 34 34 H 1.09004 * 109.47368 * 120.00055 * 2 1 3 35 35 H 1.08994 * 109.47313 * 299.99987 * 4 3 2 36 36 H 1.09007 * 109.46594 * 59.99900 * 4 3 2 37 37 H 1.09001 * 109.46990 * 179.97438 * 4 3 2 38 38 H 1.09006 * 109.47300 * 180.02562 * 5 3 2 39 39 H 1.09003 * 109.46896 * 300.00065 * 5 3 2 40 40 H 1.09006 * 109.46928 * 300.00271 * 6 5 3 41 41 H 1.09003 * 109.47278 * 60.00009 * 6 5 3 42 42 H 1.08994 * 109.47483 * 180.02562 * 6 5 3 43 43 H 0.97001 * 120.00319 * 359.97438 * 9 7 3 44 44 H 1.09000 * 109.88340 * 338.86942 * 12 10 9 45 45 H 1.09005 * 109.88355 * 99.87702 * 12 10 9 46 46 H 0.97006 * 120.00279 * 180.02562 * 17 16 14 47 47 H 1.08998 * 110.36873 * 265.28987 * 22 13 12 48 48 H 1.09005 * 110.36491 * 142.96394 * 22 13 12 49 49 H 1.08003 * 126.91308 * 0.02562 * 26 25 23 50 50 H 1.07998 * 126.74999 * 180.12239 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 1.5301 2.1637 1.2492 6 6 2.0401 1.4425 2.4985 7 6 3.5471 1.4425 -0.0006 8 8 4.1535 0.3921 -0.0006 9 7 4.2209 2.6097 -0.0002 10 6 5.6859 2.6096 -0.0003 11 1 6.0701 1.7435 -0.5391 12 6 6.2320 2.6464 1.4426 13 7 7.4005 3.5386 1.4446 14 6 8.1603 3.8562 2.5386 15 1 9.0028 4.5240 2.4355 16 6 7.8476 3.3200 3.7802 17 7 6.8210 2.5060 3.9058 18 14 8.8846 3.7526 5.2725 19 1 8.3255 4.9610 5.9303 20 1 8.8722 2.6175 6.2298 21 1 10.2803 4.0235 4.8438 22 6 7.6192 4.0341 0.0734 23 6 6.2348 3.9251 -0.6132 24 1 6.3408 3.8380 -1.6945 25 7 5.3830 5.0639 -0.2612 26 6 5.3764 5.7117 0.9267 27 6 4.4479 6.6906 0.8172 28 7 3.9332 6.5899 -0.4134 29 7 4.5083 5.6165 -1.0269 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.8933 1.6499 -2.1392 36 1 0.4400 2.1637 -1.2492 37 1 1.8930 3.1915 -1.2490 38 1 1.8931 3.1915 1.2490 39 1 0.4400 2.1637 1.2492 40 1 1.6767 0.4148 2.4985 41 1 3.1301 1.4425 2.4985 42 1 1.6764 1.9561 3.3884 43 1 3.7359 3.4498 0.0001 44 1 5.4689 3.0332 2.1180 45 1 6.5276 1.6441 1.7527 46 1 6.6021 2.1315 4.7735 47 1 8.3490 3.4109 -0.4433 48 1 7.9519 5.0720 0.0937 49 1 5.9900 5.4932 1.7882 50 1 4.1737 7.4089 1.5756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129441075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:01 Heat of formation + Delta-G solvation = 85.409344 kcal Electronic energy + Delta-G solvation = -31860.829893 eV Core-core repulsion = 27926.205631 eV Total energy + Delta-G solvation = -3934.624261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.93510 -40.30230 -38.23218 -36.42521 -34.20097 -33.42000 -31.76984 -31.19445 -30.52682 -29.90106 -28.69794 -27.53531 -25.25932 -24.76274 -23.26886 -22.74420 -22.18823 -21.70550 -20.30503 -20.03652 -18.80470 -17.62534 -17.01288 -16.70363 -15.76797 -15.64565 -15.41889 -14.96168 -14.74308 -14.46305 -14.17221 -14.10560 -13.66193 -13.50277 -13.18399 -13.05756 -12.86677 -12.54855 -12.47302 -12.33256 -12.08770 -11.82979 -11.80888 -11.53971 -11.39553 -11.32215 -11.21155 -11.09848 -10.93698 -10.83265 -10.63490 -10.54068 -10.44002 -10.35805 -10.24194 -10.01045 -9.76561 -9.37244 -8.95403 -8.85194 -8.65848 -7.15906 -5.93153 -3.32349 2.00998 2.65407 2.93531 2.94403 3.27636 3.33714 3.36271 3.38630 4.28489 4.54413 4.62420 4.69174 4.73747 4.85231 4.98372 5.09498 5.12761 5.24372 5.30441 5.38483 5.42270 5.43594 5.52148 5.61114 5.63763 5.67821 5.75513 5.78821 5.83203 5.84094 5.87616 5.93123 6.03540 6.07296 6.15629 6.17113 6.17971 6.20131 6.26192 6.37059 6.54997 6.56474 6.61082 7.06811 7.27872 7.32038 7.60306 7.74766 7.95910 8.50085 8.87545 8.94516 9.54172 10.13871 11.16501 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.004868 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.280143 B = 5750.642739 C = 7002.822799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C -0.078 4.078 4 C -0.142 4.142 5 C -0.110 4.110 6 C -0.158 4.158 7 C 0.529 3.471 8 O -0.537 6.537 9 N -0.714 5.714 10 C 0.109 3.891 11 H 0.111 0.889 12 C 0.168 3.832 13 N -0.601 5.601 14 C -0.245 4.245 15 H 0.082 0.918 16 C 0.003 3.997 17 N -0.912 5.912 18 Si 0.913 3.087 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.128 3.872 23 C 0.113 3.887 24 H 0.119 0.881 25 N -0.276 5.276 26 C -0.006 4.006 27 C -0.077 4.077 28 N -0.278 5.278 29 N -0.109 5.109 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.396 0.604 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.256 0.744 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.205 0.795 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.519 0.519 -7.247 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.138 4.138 3 C -0.081 4.081 4 C -0.200 4.200 5 C -0.148 4.148 6 C -0.215 4.215 7 C 0.316 3.684 8 O -0.413 6.413 9 N -0.366 5.366 10 C 0.002 3.998 11 H 0.129 0.871 12 C 0.043 3.957 13 N -0.329 5.329 14 C -0.372 4.372 15 H 0.100 0.900 16 C -0.195 4.195 17 N -0.557 5.557 18 Si 0.743 3.257 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.000 4.000 23 C 0.009 3.991 24 H 0.137 0.863 25 N -0.069 5.069 26 C -0.158 4.158 27 C -0.234 4.234 28 N -0.144 5.144 29 N -0.088 5.088 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.232 0.768 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.222 0.778 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.728 -0.342 -8.412 12.866 hybrid contribution 1.017 0.558 1.973 2.289 sum -8.711 0.216 -6.439 10.835 Atomic orbital electron populations 1.21912 0.95734 1.01582 1.01968 1.21376 0.95185 0.93814 1.03449 1.20867 0.91567 0.98336 0.97342 1.21909 1.01853 1.00158 0.96069 1.21601 1.01085 0.98856 0.93218 1.21865 1.02523 1.00331 0.96788 1.20419 0.89556 0.83447 0.75013 1.90686 1.70173 1.31161 1.49329 1.45840 1.06448 1.08887 1.75395 1.22858 0.80296 0.95580 1.01042 0.87121 1.21633 0.89477 0.96171 0.88424 1.44484 1.32744 1.53467 1.02208 1.18991 1.08476 1.24881 0.84895 0.89969 1.24831 0.98076 0.98796 0.97751 1.69942 1.28198 1.34007 1.23552 0.86114 0.79583 0.77491 0.82494 1.21353 1.21573 1.20568 1.21935 0.90537 0.99587 0.87915 1.23353 0.91906 0.82504 1.01352 0.86312 1.47259 1.26356 1.23225 1.10036 1.24258 1.03363 0.95461 0.92689 1.23547 1.00108 1.02910 0.96813 1.75006 1.21690 1.11693 1.06055 1.78233 1.03588 1.07199 1.19790 0.92735 0.92342 0.92511 0.91494 0.90770 0.92128 0.91175 0.92171 0.92001 0.90762 0.92331 0.91720 0.92544 0.76831 0.92286 0.92371 0.93339 0.92910 0.92348 0.77841 0.79926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.21 37.16 0.34 -1.13 16 2 C -0.10 -1.24 3.93 -26.74 -0.10 -1.35 16 3 C -0.08 -1.02 0.43 -155.66 -0.07 -1.09 16 4 C -0.14 -1.62 8.02 37.16 0.30 -1.32 16 5 C -0.11 -1.38 4.54 -26.73 -0.12 -1.50 16 6 C -0.16 -2.24 9.31 37.16 0.35 -1.89 16 7 C 0.53 8.84 5.22 -10.98 -0.06 8.78 16 8 O -0.54 -10.77 15.63 5.56 0.09 -10.69 16 9 N -0.71 -11.72 4.85 -52.03 -0.25 -11.97 16 10 C 0.11 1.91 3.19 -66.10 -0.21 1.70 16 11 H 0.11 1.97 7.55 -51.93 -0.39 1.58 16 12 C 0.17 3.65 4.53 -3.07 -0.01 3.63 16 13 N -0.60 -12.93 2.14 -170.07 -0.36 -13.29 16 14 C -0.25 -5.93 10.09 -15.06 -0.15 -6.08 16 15 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 16 C 0.00 0.09 5.49 -17.43 -0.10 -0.01 16 17 N -0.91 -24.42 10.31 55.49 0.57 -23.85 16 18 Si 0.91 20.37 29.55 -169.99 -5.02 15.35 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 22 C 0.13 2.19 6.30 -2.53 -0.02 2.17 16 23 C 0.11 1.75 4.06 -65.78 -0.27 1.49 16 24 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 25 N -0.28 -4.47 2.25 -52.67 -0.12 -4.59 16 26 C -0.01 -0.10 10.01 -17.05 -0.17 -0.27 16 27 C -0.08 -1.20 12.05 -17.74 -0.21 -1.42 16 28 N -0.28 -4.74 12.41 30.23 0.38 -4.36 16 29 N -0.11 -1.84 12.64 60.35 0.76 -1.08 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.07 1.02 6.39 -51.93 -0.33 0.69 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 37 H 0.06 0.72 7.57 -51.93 -0.39 0.33 16 38 H 0.06 0.83 7.57 -51.93 -0.39 0.44 16 39 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 40 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 41 H 0.06 1.14 7.22 -51.93 -0.37 0.77 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.40 6.39 5.91 -40.82 -0.24 6.14 16 44 H 0.06 1.43 7.27 -51.93 -0.38 1.05 16 45 H 0.06 1.50 7.50 -51.93 -0.39 1.11 16 46 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.98 8.03 -51.93 -0.42 0.56 16 49 H 0.20 3.84 6.78 -52.48 -0.36 3.48 16 50 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -28.21 384.41 -6.51 -34.72 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -7.84 Total: 12.26 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.50 Total: 1.71 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.98 Total: -59.14 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.21 -6.51 -34.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129441075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.124 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds