Wall clock time and date at job start Tue Mar 31 2020 20:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47318 * 2 1 4 4 C 1.53006 * 109.47116 * 299.99934 * 3 2 1 5 5 C 1.52999 * 109.47133 * 60.00074 * 3 2 1 6 6 C 1.52996 * 109.47404 * 60.00290 * 5 3 2 7 7 C 1.50707 * 109.47453 * 180.02562 * 3 2 1 8 8 O 1.21279 * 119.99786 * 359.97438 * 7 3 2 9 9 N 1.34778 * 119.99750 * 180.02562 * 7 3 2 10 10 C 1.46500 * 119.99379 * 179.97438 * 9 7 3 11 11 H 1.08999 * 110.64152 * 31.86309 * 10 9 7 12 12 C 1.54316 * 110.72232 * 268.51936 * 10 9 7 13 13 N 1.47020 * 107.27568 * 219.44595 * 12 10 9 14 14 C 1.36938 * 125.65236 * 178.97773 * 13 12 10 15 15 H 1.07994 * 120.00035 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99774 * 359.95644 * 14 13 12 17 17 N 1.31617 * 120.00082 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99981 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47043 * 90.00332 * 18 16 14 20 20 H 1.48496 * 109.46910 * 210.00251 * 18 16 14 21 21 H 1.48497 * 109.47083 * 330.00433 * 18 16 14 22 22 C 1.47422 * 108.70191 * 358.94070 * 13 12 10 23 23 C 1.54917 * 104.83074 * 24.12901 * 22 13 12 24 24 H 1.09006 * 111.00207 * 204.91491 * 23 22 13 25 25 N 1.46501 * 111.00397 * 81.06403 * 23 22 13 26 26 C 1.35308 * 125.86825 * 326.16784 * 25 23 22 27 27 C 1.35356 * 106.17456 * 179.90460 * 26 25 23 28 28 N 1.33766 * 106.49494 * 0.35559 * 27 26 25 29 29 N 1.28633 * 108.88748 * 359.77102 * 28 27 26 30 30 H 1.09006 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47097 * 299.99507 * 1 2 3 32 32 H 1.08995 * 109.46922 * 60.00321 * 1 2 3 33 33 H 1.09001 * 109.46973 * 239.99717 * 2 1 3 34 34 H 1.09004 * 109.47368 * 120.00055 * 2 1 3 35 35 H 1.08994 * 109.47313 * 299.99987 * 4 3 2 36 36 H 1.09007 * 109.46594 * 59.99900 * 4 3 2 37 37 H 1.09001 * 109.46990 * 179.97438 * 4 3 2 38 38 H 1.09006 * 109.47300 * 180.02562 * 5 3 2 39 39 H 1.09003 * 109.46896 * 300.00065 * 5 3 2 40 40 H 1.09006 * 109.46928 * 300.00271 * 6 5 3 41 41 H 1.09003 * 109.47278 * 60.00009 * 6 5 3 42 42 H 1.08994 * 109.47483 * 180.02562 * 6 5 3 43 43 H 0.97001 * 120.00319 * 359.97438 * 9 7 3 44 44 H 1.09000 * 109.88340 * 338.86942 * 12 10 9 45 45 H 1.09005 * 109.88355 * 99.87702 * 12 10 9 46 46 H 0.97006 * 120.00279 * 180.02562 * 17 16 14 47 47 H 1.08998 * 110.36873 * 265.28987 * 22 13 12 48 48 H 1.09005 * 110.36491 * 142.96394 * 22 13 12 49 49 H 1.08003 * 126.91308 * 0.02562 * 26 25 23 50 50 H 1.07998 * 126.74999 * 180.12239 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 1.5301 2.1637 1.2492 6 6 2.0401 1.4425 2.4985 7 6 3.5471 1.4425 -0.0006 8 8 4.1535 0.3921 -0.0006 9 7 4.2209 2.6097 -0.0002 10 6 5.6859 2.6096 -0.0003 11 1 6.0701 1.7435 -0.5391 12 6 6.2320 2.6464 1.4426 13 7 7.4005 3.5386 1.4446 14 6 8.1603 3.8562 2.5386 15 1 9.0028 4.5240 2.4355 16 6 7.8476 3.3200 3.7802 17 7 6.8210 2.5060 3.9058 18 14 8.8846 3.7526 5.2725 19 1 8.3255 4.9610 5.9303 20 1 8.8722 2.6175 6.2298 21 1 10.2803 4.0235 4.8438 22 6 7.6192 4.0341 0.0734 23 6 6.2348 3.9251 -0.6132 24 1 6.3408 3.8380 -1.6945 25 7 5.3830 5.0639 -0.2612 26 6 5.3764 5.7117 0.9267 27 6 4.4479 6.6906 0.8172 28 7 3.9332 6.5899 -0.4134 29 7 4.5083 5.6165 -1.0269 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.8933 1.6499 -2.1392 36 1 0.4400 2.1637 -1.2492 37 1 1.8930 3.1915 -1.2490 38 1 1.8931 3.1915 1.2490 39 1 0.4400 2.1637 1.2492 40 1 1.6767 0.4148 2.4985 41 1 3.1301 1.4425 2.4985 42 1 1.6764 1.9561 3.3884 43 1 3.7359 3.4498 0.0001 44 1 5.4689 3.0332 2.1180 45 1 6.5276 1.6441 1.7527 46 1 6.6021 2.1315 4.7735 47 1 8.3490 3.4109 -0.4433 48 1 7.9519 5.0720 0.0937 49 1 5.9900 5.4932 1.7882 50 1 4.1737 7.4089 1.5756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129441075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:59 Heat of formation + Delta-G solvation = 68.834927 kcal Electronic energy + Delta-G solvation = -31861.548613 eV Core-core repulsion = 27926.205631 eV Total energy + Delta-G solvation = -3935.342982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -44.25898 -41.60423 -39.68547 -37.66996 -35.81712 -34.84043 -33.44459 -32.24270 -31.84260 -31.08034 -30.15098 -29.05726 -26.75567 -26.01566 -24.33652 -24.14095 -23.51071 -23.09225 -21.79209 -21.49878 -20.04781 -19.16528 -18.55258 -17.99440 -17.22518 -16.93713 -16.66436 -16.49272 -15.95462 -15.91665 -15.68081 -15.40852 -14.98606 -14.86504 -14.65222 -14.29033 -13.97573 -13.89223 -13.81670 -13.54553 -13.35622 -13.08375 -13.01892 -12.86632 -12.81068 -12.72209 -12.53909 -12.49957 -12.27844 -12.25260 -12.08107 -11.95644 -11.88645 -11.82067 -11.44124 -11.36493 -11.13587 -10.77858 -10.69472 -10.25764 -10.14555 -9.00969 -7.87064 -5.26304 0.65993 1.32933 1.48175 1.49688 1.57252 1.59035 1.65555 2.04559 2.46922 3.17358 3.32865 3.37496 3.49135 3.58003 3.61651 3.75342 3.81512 3.91920 4.05127 4.20845 4.24399 4.27259 4.41085 4.43735 4.46203 4.49376 4.60139 4.66150 4.67369 4.74223 4.78738 4.84579 4.88156 4.90328 4.99530 5.07267 5.10277 5.15479 5.25564 5.26133 5.30541 5.35678 5.42083 5.49758 5.57676 5.68841 5.73662 6.08480 6.38156 7.00986 7.15251 7.55421 7.68133 8.27909 9.21085 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.004868 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.280143 B = 5750.642739 C = 7002.822799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.073 4.073 4 C -0.137 4.137 5 C -0.104 4.104 6 C -0.153 4.153 7 C 0.523 3.477 8 O -0.577 6.577 9 N -0.708 5.708 10 C 0.118 3.882 11 H 0.109 0.891 12 C 0.192 3.808 13 N -0.614 5.614 14 C -0.239 4.239 15 H 0.093 0.907 16 C -0.052 4.052 17 N -0.944 5.944 18 Si 0.971 3.029 19 H -0.284 1.284 20 H -0.305 1.305 21 H -0.269 1.269 22 C 0.127 3.873 23 C 0.127 3.873 24 H 0.155 0.845 25 N -0.273 5.273 26 C -0.020 4.020 27 C -0.064 4.064 28 N -0.289 5.289 29 N -0.108 5.108 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.017 0.983 42 H 0.064 0.936 43 H 0.400 0.600 44 H 0.027 0.973 45 H 0.004 0.996 46 H 0.245 0.755 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.184 0.816 50 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 2.161 -8.952 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.076 4.076 4 C -0.194 4.194 5 C -0.141 4.141 6 C -0.211 4.211 7 C 0.311 3.689 8 O -0.456 6.456 9 N -0.359 5.359 10 C 0.010 3.990 11 H 0.127 0.873 12 C 0.066 3.934 13 N -0.341 5.341 14 C -0.367 4.367 15 H 0.110 0.890 16 C -0.246 4.246 17 N -0.591 5.591 18 Si 0.800 3.200 19 H -0.211 1.211 20 H -0.232 1.232 21 H -0.194 1.194 22 C 0.001 3.999 23 C 0.023 3.977 24 H 0.173 0.827 25 N -0.066 5.066 26 C -0.172 4.172 27 C -0.220 4.220 28 N -0.155 5.155 29 N -0.087 5.087 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.083 0.917 43 H 0.236 0.764 44 H 0.045 0.955 45 H 0.022 0.978 46 H 0.054 0.946 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.201 0.799 50 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -11.056 1.349 -10.159 15.075 hybrid contribution 1.473 0.048 2.493 2.896 sum -9.583 1.397 -7.666 12.351 Atomic orbital electron populations 1.21886 0.92874 1.02675 1.03104 1.21358 0.97540 0.92823 1.01957 1.20928 0.88528 0.99399 0.98760 1.21901 1.03552 0.99278 0.94677 1.21607 1.02926 0.97805 0.91799 1.21813 0.99419 1.01434 0.98410 1.21243 0.91324 0.82685 0.73623 1.90662 1.71379 1.32490 1.51098 1.45794 1.05893 1.09174 1.75031 1.22550 0.81139 0.97000 0.98288 0.87284 1.21112 0.88837 0.93005 0.90493 1.44599 1.32386 1.53451 1.03700 1.19353 1.08190 1.23560 0.85591 0.88962 1.25524 0.99298 0.99498 1.00289 1.70173 1.30100 1.35803 1.23059 0.85196 0.78802 0.76519 0.79475 1.21050 1.23180 1.19367 1.22126 0.91867 1.00245 0.85671 1.23340 0.90415 0.81022 1.02916 0.82715 1.47273 1.26363 1.23153 1.09839 1.24059 1.04139 0.96499 0.92474 1.23976 0.98743 1.02524 0.96791 1.75016 1.22007 1.11916 1.06576 1.78215 1.03495 1.07251 1.19765 0.91839 0.91540 0.90868 0.92433 0.92988 0.92060 0.88357 0.92744 0.92800 0.87408 0.91501 0.96331 0.91680 0.76378 0.95527 0.97773 0.94610 0.90755 0.91285 0.79924 0.77122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.21 71.98 0.66 -1.75 16 2 C -0.10 -2.38 3.93 30.59 0.12 -2.26 16 3 C -0.07 -1.85 0.43 -52.93 -0.02 -1.88 16 4 C -0.14 -2.76 8.02 71.98 0.58 -2.19 16 5 C -0.10 -2.50 4.54 30.59 0.14 -2.36 16 6 C -0.15 -4.47 9.31 71.98 0.67 -3.80 16 7 C 0.52 17.91 5.22 87.66 0.46 18.37 16 8 O -0.58 -24.32 15.63 -3.03 -0.05 -24.37 16 9 N -0.71 -23.57 4.85 -436.92 -2.12 -25.69 16 10 C 0.12 4.20 3.19 46.18 0.15 4.34 16 11 H 0.11 3.97 7.55 -2.39 -0.02 3.95 16 12 C 0.19 8.76 4.53 86.73 0.39 9.16 16 13 N -0.61 -26.86 2.14 -691.99 -1.48 -28.34 16 14 C -0.24 -11.68 10.09 84.03 0.85 -10.83 16 15 H 0.09 4.26 7.83 -2.91 -0.02 4.23 16 16 C -0.05 -2.71 5.49 84.86 0.47 -2.24 16 17 N -0.94 -53.51 10.31 21.65 0.22 -53.29 16 18 Si 0.97 42.84 29.55 68.60 2.03 44.87 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 C 0.13 4.17 6.30 86.86 0.55 4.72 16 23 C 0.13 3.74 4.06 46.39 0.19 3.93 16 24 H 0.16 3.58 8.14 -2.38 -0.02 3.56 16 25 N -0.27 -8.45 2.25 -320.56 -0.72 -9.17 16 26 C -0.02 -0.66 10.01 83.49 0.84 0.18 16 27 C -0.06 -1.87 12.05 83.73 1.01 -0.86 16 28 N -0.29 -9.19 12.41 -58.26 -0.72 -9.91 16 29 N -0.11 -3.42 12.64 37.02 0.47 -2.96 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.07 0.99 6.43 -2.39 -0.02 0.97 16 32 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 33 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 34 H 0.05 1.47 6.39 -2.38 -0.02 1.45 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.45 6.43 -2.38 -0.02 1.44 16 37 H 0.05 1.18 7.57 -2.39 -0.02 1.16 16 38 H 0.05 1.39 7.57 -2.38 -0.02 1.37 16 39 H 0.11 1.92 6.43 -2.39 -0.02 1.90 16 40 H 0.07 1.80 6.43 -2.38 -0.02 1.78 16 41 H 0.02 0.68 7.22 -2.39 -0.02 0.67 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.40 12.76 5.91 -92.71 -0.55 12.21 16 44 H 0.03 1.38 7.27 -2.39 -0.02 1.36 16 45 H 0.00 0.23 7.50 -2.38 -0.02 0.21 16 46 H 0.24 13.88 8.31 -92.70 -0.77 13.11 16 47 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.07 2.17 8.03 -2.38 -0.02 2.15 16 49 H 0.18 6.96 6.78 -2.91 -0.02 6.94 16 50 H 0.21 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -65.16 384.41 5.07 -60.10 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.40 Total: 36.21 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 7.04 Total: 12.54 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -4.35 Total: -129.35 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.05 Total: -24.37 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.16 5.07 -60.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129441075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.930 kcal (2) G-P(sol) polarization free energy of solvation -65.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds