Wall clock time and date at job start Tue Mar 31 2020 20:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47331 * 2 1 4 4 C 1.52995 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47221 * 54.99979 * 4 3 2 6 6 C 1.53001 * 109.47079 * 295.00307 * 4 3 2 7 7 C 1.52997 * 109.47210 * 174.99835 * 4 3 2 8 8 C 1.50705 * 109.47426 * 184.99830 * 7 4 3 9 9 O 1.21278 * 119.99459 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99949 * 179.97438 * 8 7 4 11 11 C 1.47459 * 125.63035 * 359.91967 * 10 8 7 12 12 C 1.54911 * 104.81307 * 204.13890 * 11 10 8 13 13 H 1.09004 * 110.99923 * 81.13240 * 12 11 10 14 14 N 1.46490 * 111.00591 * 204.95079 * 12 11 10 15 15 C 1.36935 * 120.00121 * 270.41461 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46685 * 269.99637 * 19 17 15 21 21 H 1.48494 * 109.47357 * 29.99716 * 19 17 15 22 22 H 1.48502 * 109.47120 * 150.00435 * 19 17 15 23 23 C 1.55160 * 101.61287 * 323.04762 * 12 11 10 24 24 H 1.09004 * 110.71555 * 154.02706 * 23 12 11 25 25 N 1.46507 * 110.71667 * 277.11386 * 23 12 11 26 26 C 1.35305 * 125.86820 * 84.72095 * 25 23 12 27 27 C 1.35344 * 106.17931 * 179.90395 * 26 25 23 28 28 N 1.33779 * 106.49480 * 0.35154 * 27 26 25 29 29 N 1.28636 * 108.88157 * 359.77432 * 28 27 26 30 30 C 1.47024 * 125.64362 * 180.02562 * 10 8 7 31 31 H 1.09004 * 109.47299 * 59.99575 * 1 2 3 32 32 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47109 * 300.00367 * 1 2 3 34 34 H 1.09000 * 109.47340 * 240.00561 * 2 1 3 35 35 H 1.08997 * 109.47211 * 119.99748 * 2 1 3 36 36 H 1.09008 * 109.46936 * 59.99641 * 3 2 1 37 37 H 1.09006 * 109.46790 * 300.00256 * 3 2 1 38 38 H 1.09004 * 109.46557 * 180.02562 * 6 4 3 39 39 H 1.09003 * 109.46728 * 299.99140 * 6 4 3 40 40 H 1.08988 * 109.47301 * 59.99869 * 6 4 3 41 41 H 1.09010 * 109.46932 * 65.00043 * 7 4 3 42 42 H 1.08995 * 109.47416 * 305.00572 * 7 4 3 43 43 H 1.09008 * 110.35088 * 85.32523 * 11 10 8 44 44 H 1.09002 * 110.40628 * 322.98833 * 11 10 8 45 45 H 0.97000 * 120.00577 * 90.42061 * 14 12 11 46 46 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 47 47 H 1.08001 * 126.91140 * 0.02562 * 26 25 23 48 48 H 1.08000 * 126.75738 * 180.12170 * 27 26 25 49 49 H 1.09003 * 109.88172 * 59.48649 * 30 10 8 50 50 H 1.08997 * 110.00870 * 298.39431 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8330 1.3083 7 6 4.0800 2.8795 -0.1251 8 6 5.5820 2.8705 -0.2480 9 8 6.1850 1.8183 -0.2366 10 7 6.2550 4.0317 -0.3715 11 6 5.6500 5.3761 -0.4026 12 6 6.6796 6.2565 -1.1539 13 1 6.5860 6.1327 -2.2328 14 7 6.5412 7.6650 -0.7758 15 6 5.6914 8.4810 -1.4737 16 1 5.1230 8.0861 -2.3027 17 6 5.5606 9.8158 -1.1158 18 7 6.2538 10.2973 -0.1058 19 14 4.4008 10.9287 -2.0676 20 1 5.1340 11.5601 -3.1942 21 1 3.2706 10.1262 -2.6003 22 1 3.8760 11.9847 -1.1649 23 6 8.0227 5.6725 -0.6415 24 1 8.8177 5.8387 -1.3685 25 7 8.3793 6.2532 0.6554 26 6 7.9464 5.8225 1.8628 27 6 8.5185 6.6361 2.7807 28 7 9.2575 7.5182 2.0984 29 7 9.1538 7.2643 0.8416 30 6 7.7133 4.1673 -0.4998 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6766 1.9564 -0.8900 38 1 5.1694 0.8335 1.3088 39 1 3.7158 1.4227 2.1498 40 1 3.7161 -0.1906 1.3978 41 1 3.7913 3.4463 0.7601 42 1 3.6458 3.3430 -1.0109 43 1 5.5008 5.7482 0.6111 44 1 4.7035 5.3545 -0.9428 45 1 7.0515 8.0198 -0.0310 46 1 6.8557 9.7192 0.3886 47 1 7.2801 4.9947 2.0555 48 1 8.3988 6.5858 3.8529 49 1 8.0589 3.6327 -1.3846 50 1 8.2044 3.7701 0.3885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129671214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:18 Heat of formation + Delta-G solvation = 50.564638 kcal Electronic energy + Delta-G solvation = -30087.015521 eV Core-core repulsion = 26150.880279 eV Total energy + Delta-G solvation = -3936.135241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -44.34904 -41.36143 -39.44713 -37.55461 -36.31896 -35.04138 -33.58950 -33.03703 -32.04375 -31.09407 -29.10386 -28.69179 -27.45297 -25.86732 -25.12488 -23.74381 -23.32290 -22.68333 -21.62830 -21.02512 -20.15832 -19.64168 -18.78364 -18.33005 -17.49249 -17.00925 -16.65415 -16.23009 -16.05623 -16.02206 -15.80442 -15.49187 -15.22876 -14.86302 -14.75347 -14.66847 -14.41415 -14.15453 -13.89242 -13.54762 -13.27118 -13.11634 -12.89199 -12.81372 -12.67456 -12.60823 -12.55333 -12.47880 -12.33217 -11.94060 -11.87848 -11.81535 -11.68268 -11.49018 -11.41397 -11.26908 -11.23567 -10.95678 -10.76110 -10.36703 -9.84511 -9.27257 -8.41937 -5.42196 0.60849 1.29009 1.56399 1.59079 1.61054 1.69178 1.78360 1.82473 2.66708 2.88359 3.19363 3.43826 3.48169 3.61618 3.62445 3.79310 3.87038 3.95211 3.98258 4.09293 4.12037 4.17664 4.25188 4.28469 4.40877 4.43531 4.48524 4.55151 4.65498 4.69376 4.74692 4.78335 4.81842 4.90781 4.94991 4.98708 5.01940 5.06980 5.19348 5.21472 5.25872 5.32399 5.43022 5.54640 5.55548 5.58507 5.62037 6.34293 6.41706 6.96364 7.06963 7.51036 7.86554 7.96968 9.07059 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.003478 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.964657 B = 8047.522185 C =10084.635099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.070 4.070 5 H 0.064 0.936 6 C -0.150 4.150 7 C -0.131 4.131 8 C 0.533 3.467 9 O -0.565 6.565 10 N -0.613 5.613 11 C 0.087 3.913 12 C 0.162 3.838 13 H 0.101 0.899 14 N -0.736 5.736 15 C -0.337 4.337 16 H 0.083 0.917 17 C -0.100 4.100 18 N -0.971 5.971 19 Si 1.130 2.870 20 H -0.288 1.288 21 H -0.262 1.262 22 H -0.299 1.299 23 C 0.113 3.887 24 H 0.140 0.860 25 N -0.268 5.268 26 C -0.039 4.039 27 C -0.061 4.061 28 N -0.308 5.308 29 N -0.115 5.115 30 C 0.115 3.885 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.365 0.635 46 H 0.241 0.759 47 H 0.207 0.793 48 H 0.218 0.782 49 H 0.113 0.887 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.760 -21.416 0.467 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.089 4.089 5 H 0.082 0.918 6 C -0.207 4.207 7 C -0.171 4.171 8 C 0.324 3.676 9 O -0.444 6.444 10 N -0.348 5.348 11 C -0.039 4.039 12 C 0.050 3.950 13 H 0.119 0.881 14 N -0.378 5.378 15 C -0.467 4.467 16 H 0.101 0.899 17 C -0.292 4.292 18 N -0.618 5.618 19 Si 0.954 3.046 20 H -0.215 1.215 21 H -0.187 1.187 22 H -0.226 1.226 23 C 0.010 3.990 24 H 0.158 0.842 25 N -0.062 5.062 26 C -0.190 4.190 27 C -0.218 4.218 28 N -0.173 5.173 29 N -0.094 5.094 30 C -0.009 4.009 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.112 0.888 45 H 0.199 0.801 46 H 0.051 0.949 47 H 0.224 0.776 48 H 0.235 0.765 49 H 0.131 0.869 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.309 -19.497 -0.530 20.828 hybrid contribution 0.466 -1.764 1.002 2.082 sum -6.843 -21.261 0.473 22.340 Atomic orbital electron populations 1.21778 0.95450 1.01836 1.01932 1.21560 0.96093 0.96588 1.02038 1.21651 0.93288 0.97405 1.02594 1.20857 0.95546 0.93529 0.98977 0.91759 1.21944 1.01376 1.00902 0.96522 1.21824 0.89461 1.00218 1.05567 1.20859 0.90920 0.81123 0.74680 1.90667 1.71186 1.30846 1.51749 1.48536 1.06831 1.06458 1.72945 1.23174 0.99062 0.80552 1.01108 1.21872 0.90179 0.83923 0.99048 0.88149 1.42514 1.51590 1.05409 1.38285 1.20408 1.19556 0.93861 1.12911 0.89894 1.27255 1.03859 0.97838 1.00246 1.70967 1.29753 1.38262 1.22836 0.82613 0.74097 0.74108 0.73737 1.21541 1.18668 1.22632 1.23309 1.01002 0.93612 0.81102 0.84218 1.47449 1.29882 1.20369 1.08467 1.23891 1.05719 1.05337 0.84062 1.24173 0.99952 0.94734 1.02977 1.75071 1.21447 1.23218 0.97576 1.78351 1.13289 1.04416 1.13329 1.22114 0.82642 0.91143 1.04980 0.92698 0.92463 0.92621 0.92353 0.91805 0.91417 0.91445 0.93102 0.92700 0.92100 0.87818 0.87482 0.92272 0.88751 0.80120 0.94884 0.77616 0.76528 0.86885 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.04 16 2 C -0.13 -1.62 5.69 30.59 0.17 -1.45 16 3 C -0.11 -1.52 4.68 30.59 0.14 -1.38 16 4 C -0.07 -1.18 2.04 -10.80 -0.02 -1.20 16 5 H 0.06 1.26 7.95 -2.39 -0.02 1.24 16 6 C -0.15 -2.70 8.69 71.98 0.63 -2.07 16 7 C -0.13 -2.27 4.18 29.85 0.12 -2.15 16 8 C 0.53 12.05 7.57 87.66 0.66 12.71 16 9 O -0.57 -15.85 14.29 -3.02 -0.04 -15.89 16 10 N -0.61 -13.56 3.33 -811.70 -2.70 -16.26 16 11 C 0.09 2.28 5.97 86.85 0.52 2.80 16 12 C 0.16 5.21 3.56 46.39 0.17 5.37 16 13 H 0.10 3.07 8.11 -2.38 -0.02 3.05 16 14 N -0.74 -33.62 5.21 -316.38 -1.65 -35.27 16 15 C -0.34 -17.27 9.97 84.03 0.84 -16.43 16 16 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 17 C -0.10 -5.60 5.50 84.86 0.47 -5.13 16 18 N -0.97 -61.17 13.70 21.65 0.30 -60.87 16 19 Si 1.13 49.83 29.92 68.60 2.05 51.88 16 20 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 C 0.11 3.09 3.97 46.18 0.18 3.27 16 24 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 25 N -0.27 -8.73 2.40 -321.54 -0.77 -9.50 16 26 C -0.04 -1.10 9.34 83.49 0.78 -0.32 16 27 C -0.06 -1.88 12.05 83.73 1.01 -0.87 16 28 N -0.31 -12.40 12.41 -58.26 -0.72 -13.12 16 29 N -0.12 -4.71 12.22 37.02 0.45 -4.26 16 30 C 0.12 2.47 5.90 86.73 0.51 2.98 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.83 6.56 -2.39 -0.02 0.81 16 36 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.05 1.16 5.95 -2.39 -0.01 1.14 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.99 6.56 -2.39 -0.02 0.97 16 41 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.11 1.62 7.84 -2.39 -0.02 1.60 16 43 H 0.06 1.74 7.58 -2.38 -0.02 1.72 16 44 H 0.09 2.29 7.48 -2.39 -0.02 2.28 16 45 H 0.36 18.54 4.76 -92.71 -0.44 18.10 16 46 H 0.24 15.62 6.77 -92.71 -0.63 14.99 16 47 H 0.21 4.51 7.71 -2.91 -0.02 4.49 16 48 H 0.22 4.85 8.06 -2.91 -0.02 4.83 16 49 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.08 1.79 7.18 -2.39 -0.02 1.78 16 Total: -1.00 -73.43 395.63 4.44 -68.99 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: 0.63 Total: 39.21 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 6.90 Total: -4.90 kcal Atomic # 7 Polarization: -134.19 SS G_CDS: -5.10 Total: -139.29 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.04 Total: -15.89 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.88 kcal Total: -73.43 4.44 -68.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129671214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.559 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds